Rw6G044370

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001500
Physical Location & Seq
Reverse (-)
67504776 .. 67505639
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044370.1

Sequence Viewer

Length: 864 bp
ATGGAGGCCAATAAAACTAAAGCCTCGATGTTCTTCTTCGTTCTCTCCATGTTGTCCATAAGCTCTTGTTCGGCTTTCAACATCACGAAGCTGCTTAACAAAGAATCCGATTTCAGCACCTTTAACAAATACCTCTCCGAGACCAAACTCGCCGACCAGATCAACAAGCGAAGCACCATCACCGTCCTCGCCGTGGCCAACGACGCAATGGGCGGCCTCTCTAGCGACGACAGCTTCACCCTCAAGTCGGTCATGAGCGTCCACGTCATCCTCGACTACTACGACAAGGAGAAGTTGGCTAAGCTGGCCAAGAACAATAGAAGCGCCATGCTGACGTCTCTATTCCAGAGTTCGGGCGTGGCTCAAAACCAACAGGGCTTCGTTCTGGTCGAAGTCGTTGACGGTGAGATTTTTTTCGGGTCAGCATCCAAGGGTGCACAAATGAACTCCAAGATTGTTAAGTCGGTGACAGCTCAGCCCTACAACATTTCCGTGCTTGAGGTCAGCTCCATCATTGGGGTTCCCAACATCAATGCTTCTCCGGCGCCCGAGAAAGCTCCGGCACCGAAGAAAGGCAAGTCTGCCAGTCCGGAAGACGAGGCAGAGAGCCCTTCCGAAGACACCGCTGAAAGTCCTGCCGATGACACGTCGGACTCGGACTCGGAGCCTCCGAGTCCGTCCAAAGCCAGAGATTCGACTCCACCCAAGCCAGGTTATGAGGATGATCTGGTGACGGTAGATTCGCCATCTTCGACTCCGGCACCTGCGCCCTCCAAGAATGATGCACGCGCCACCGCTGCTGAGATGGGAGTTGGGGTTGTTGCGATGGGGTTGGTTATTTCAGTATTGGTTGCTTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

287

Amino Acids

30.26

Weight (kDa)

4.79

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 37 - 113 2.7e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 772
AatII GACGTC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 772
AccB1I GGYRCC 3 cut(s) 544, 562, 760
AccII CGCG 1 cut(s) 789
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 3 cut(s) 213, 624, 795
AcoI YGGCCR 2 cut(s) 195, 306
AcyI GRCGYC 2 cut(s) 335, 545
AfiI CCNNNNNNNGG 6 cut(s) 193, 247, 352, 516, 572, 710
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 1 cut(s) 79
AjiI CACGTC 2 cut(s) 265, 648
AjnI CCWGG 1 cut(s) 709
AluBI AGCT 7 cut(s) 63, 91, 234, 304, 473, 507, 557
AluI AGCT 7 cut(s) 63, 91, 234, 304, 473, 507, 557
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 2 cut(s) 134, 342
Alw44I GTGCAC 1 cut(s) 435
Ama87I CYCGRG 1 cut(s) 548
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 4 cut(s) 6, 195, 214, 306
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 91, 797
ArsI GACNNNNNNTTYG 2 cut(s) 724, 756
AspLEI GCGC 4 cut(s) 326, 547, 769, 791
AsuHPI GGTGA 5 cut(s) 172, 229, 416, 478, 742
AvaI CYCGRG 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 439
BalI TGGCCA 2 cut(s) 197, 308
BanI GGYRCC 3 cut(s) 544, 562, 760
BanII GRGCYC 1 cut(s) 611
BbsI GAAGAC 2 cut(s) 600, 624
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 78, 784
BccI CCATC 5 cut(s) 185, 518, 754, 799, 820
BceAI ACGGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 711
BcoDI GTCTC 2 cut(s) 134, 342
BfaI CTAG 1 cut(s) 222
BfoI RGCGCY 2 cut(s) 327, 548
BfuAI ACCTGC 1 cut(s) 772
BisI GCNGC 3 cut(s) 92, 214, 798
BlpI GCTNAGC 2 cut(s) 300, 474
BlsI GCNGC 3 cut(s) 93, 215, 799
Bme1390I CCNGG 1 cut(s) 711
BmeT110I CYCGRG 1 cut(s) 548
BmgBI CACGTC 2 cut(s) 265, 648
BmiI GGNNCC 5 cut(s) 522, 546, 564, 666, 762
BmrFI CCNGG 1 cut(s) 711
BmsI GCATC 2 cut(s) 434, 772
BpiI GAAGAC 2 cut(s) 600, 624
BplI GAGNNNNNCTC 2 cut(s) 491, 523
Bpu1102I GCTNAGC 2 cut(s) 300, 474
BpuEI CTTGAG 2 cut(s) 227, 518
BsaHI GRCGYC 2 cut(s) 335, 545
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 192, 429
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 6 cut(s) 193, 247, 352, 516, 572, 710
Bse1I ACTGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 213
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 1 cut(s) 711
BseDI CCNNGG 2 cut(s) 192, 429
BseGI GGATG 3 cut(s) 267, 425, 727
BseLI CCNNNNNNNGG 6 cut(s) 193, 247, 352, 516, 572, 710
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 488, 792
BseNI ACTGG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 2 cut(s) 78, 784
Bsh1236I CGCG 1 cut(s) 789
BshFI GGCC 4 cut(s) 8, 197, 216, 308
BshNI GGYRCC 3 cut(s) 544, 562, 760
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 4 cut(s) 542, 560, 590, 758
BslI CCNNNNNNNGG 6 cut(s) 193, 247, 352, 516, 572, 710
BsmAI GTCTC 2 cut(s) 134, 342
BsmBI CGTCTC 1 cut(s) 342
BsnI GGCC 4 cut(s) 8, 197, 216, 308
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 439, 611
Bsp13I TCCGGA 1 cut(s) 589
Bsp143I GATC 2 cut(s) 159, 724
Bsp1720I GCTNAGC 2 cut(s) 300, 474
BspACI CCGC 3 cut(s) 213, 624, 795
BspANI GGCC 4 cut(s) 8, 197, 216, 308
BspCNI CTCAG 2 cut(s) 487, 793
BspEI TCCGGA 1 cut(s) 589
BspFNI CGCG 1 cut(s) 789
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 5 cut(s) 522, 546, 564, 666, 762
BspMI ACCTGC 1 cut(s) 772
BspT107I GGYRCC 3 cut(s) 544, 562, 760
BspTNI GGTCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 585
BssECI CCNNGG 2 cut(s) 192, 429
BssMI GATC 2 cut(s) 159, 724
BssNI GRCGYC 2 cut(s) 335, 545
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 3 cut(s) 184, 404, 736
BstACI GRCGYC 2 cut(s) 335, 545
BstC8I GCNNGC 2 cut(s) 306, 787
BstDEI CTNAG 3 cut(s) 300, 474, 801
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 3 cut(s) 267, 425, 727
BstFNI CGCG 1 cut(s) 789
BstH2I RGCGCY 2 cut(s) 327, 548
BstHHI GCGC 4 cut(s) 326, 547, 769, 791
BstKTI GATC 2 cut(s) 162, 727
BstMAI GTCTC 2 cut(s) 134, 342
BstMBI GATC 2 cut(s) 159, 724
BstMWI GCNNNNNNNGC 6 cut(s) 203, 222, 231, 305, 542, 797
BstNI CCWGG 1 cut(s) 711
BstSCI CCNGG 1 cut(s) 709
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 1 cut(s) 789
BstV1I GCAGC 2 cut(s) 78, 784
BstV2I GAAGAC 2 cut(s) 600, 624
BsuRI GGCC 4 cut(s) 8, 197, 216, 308
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 839
BtrI CACGTC 2 cut(s) 265, 648
BtsCI GGATG 3 cut(s) 267, 425, 727
BveI ACCTGC 1 cut(s) 772
Cac8I GCNNGC 2 cut(s) 306, 787
CciI TCATGA 1 cut(s) 252
CfoI GCGC 4 cut(s) 326, 547, 769, 791
CseI GACGC 2 cut(s) 212, 247
CviAII CATG 3 cut(s) 49, 253, 328
DdeI CTNAG 3 cut(s) 300, 474, 801
DinI GGCGCC 1 cut(s) 546
DpnI GATC 2 cut(s) 161, 726
DpnII GATC 2 cut(s) 159, 724
EaeI YGGCCR 2 cut(s) 195, 306
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 611
Eco31I GGTCTC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 611
EgeI GGCGCC 1 cut(s) 546
EheI GGCGCC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 429
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 3 cut(s) 52, 256, 331
FaiI YATR 5 cut(s) 50, 59, 254, 329, 717
FatI CATG 3 cut(s) 48, 252, 327
Fnu4HI GCNGC 3 cut(s) 92, 214, 798
FokI GGATG 3 cut(s) 254, 412, 734
FriOI GRGCYC 1 cut(s) 611
Fsp4HI GCNGC 3 cut(s) 92, 214, 798
FspBI CTAG 1 cut(s) 222
GlaI GCGC 4 cut(s) 325, 546, 768, 790
GluI GCNGC 3 cut(s) 92, 214, 798
HaeII RGCGCY 2 cut(s) 327, 548
HaeIII GGCC 4 cut(s) 8, 197, 216, 308
HapII CCGG 4 cut(s) 542, 560, 590, 758
HgaI GACGC 2 cut(s) 212, 247
HhaI GCGC 4 cut(s) 326, 547, 769, 791
Hin1I GRCGYC 2 cut(s) 335, 545
Hin1II CATG 3 cut(s) 52, 256, 331
Hin6I GCGC 4 cut(s) 324, 545, 767, 789
HinP1I GCGC 4 cut(s) 324, 545, 767, 789
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 8 cut(s) 104, 653, 659, 673, 692, 697, 740, 754
HpaII CCGG 4 cut(s) 542, 560, 590, 758
HphI GGTGA 5 cut(s) 172, 229, 416, 478, 742
Hpy166II GTNNAC 3 cut(s) 262, 400, 437
Hpy188I TCNGA 8 cut(s) 109, 139, 616, 652, 658, 664, 672, 863
Hpy188III TCNNGA 4 cut(s) 85, 253, 346, 590
Hpy8I GTNNAC 3 cut(s) 262, 400, 437
Hpy99I CGWCG 3 cut(s) 206, 230, 652
HpyAV CCTTC 1 cut(s) 621
HpyCH4III ACNGT 3 cut(s) 184, 404, 736
HpyCH4IV ACGT 3 cut(s) 264, 335, 647
HpyCH4V TGCA 2 cut(s) 437, 785
HpyF10VI GCNNNNNNNGC 6 cut(s) 203, 222, 231, 305, 542, 797
HpyF3I CTNAG 3 cut(s) 300, 474, 801
HpySE526I ACGT 3 cut(s) 264, 335, 647
Hsp92I GRCGYC 2 cut(s) 335, 545
Hsp92II CATG 3 cut(s) 52, 256, 331
HspAI GCGC 4 cut(s) 324, 545, 767, 789
KasI GGCGCC 1 cut(s) 544
Kpn2I TCCGGA 1 cut(s) 589
Kzo9I GATC 2 cut(s) 159, 724
LmnI GCTCC 3 cut(s) 512, 562, 664
Lsp1109I GCAGC 2 cut(s) 78, 784
LweI GCATC 2 cut(s) 434, 772
MaeI CTAG 1 cut(s) 222
MaeII ACGT 3 cut(s) 264, 335, 647
MaeIII GTNAC 2 cut(s) 466, 730
MalI GATC 2 cut(s) 161, 726
MboI GATC 2 cut(s) 159, 724
MboII GAAGA 6 cut(s) 25, 28, 580, 605, 629, 741
MhlI GDGCHC 2 cut(s) 439, 611
MlsI TGGCCA 2 cut(s) 197, 308
MluNI TGGCCA 2 cut(s) 197, 308
Mly113I GGCGCC 1 cut(s) 545
MlyI GAGTC 5 cut(s) 647, 653, 682, 691, 748
MmeI TCCRAC 1 cut(s) 630
Mox20I TGGCCA 2 cut(s) 197, 308
MroI TCCGGA 1 cut(s) 589
MscI TGGCCA 2 cut(s) 197, 308
MseI TTAA 3 cut(s) 96, 123, 459
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 2 cut(s) 197, 308
MspA1I CMGCKG 2 cut(s) 626, 797
MspI CCGG 4 cut(s) 542, 560, 590, 758
MspR9I CCNGG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 711
MvnI CGCG 1 cut(s) 789
MwoI GCNNNNNNNGC 6 cut(s) 203, 222, 231, 305, 542, 797
NarI GGCGCC 1 cut(s) 545
NdeII GATC 2 cut(s) 159, 724
NlaIII CATG 3 cut(s) 52, 256, 331
NlaIV GGNNCC 5 cut(s) 522, 546, 564, 666, 762
NmuCI GTSAC 2 cut(s) 466, 730
PagI TCATGA 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 772
PcsI WCGNNNNNNNCGW 5 cut(s) 270, 279, 387, 668, 749
PfeI GAWTC 3 cut(s) 104, 692, 740
PkrI GCNGC 3 cut(s) 93, 215, 799
PleI GAGTC 5 cut(s) 647, 653, 681, 691, 748
PluTI GGCGCC 1 cut(s) 548
PpsI GAGTC 5 cut(s) 647, 653, 681, 691, 748
Psp6I CCWGG 1 cut(s) 709
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 5 cut(s) 522, 546, 564, 666, 762
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 3 cut(s) 96, 123, 459
SatI GCNGC 3 cut(s) 92, 214, 798
Sau3AI GATC 2 cut(s) 159, 724
SchI GAGTC 5 cut(s) 647, 653, 682, 691, 748
ScrFI CCNGG 1 cut(s) 711
SduI GDGCHC 2 cut(s) 439, 611
SfaNI GCATC 2 cut(s) 434, 772
SfoI GGCGCC 1 cut(s) 546
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 242, 497
SmoI CTYRAG 2 cut(s) 242, 497
SsiI CCGC 3 cut(s) 213, 624, 795
SspDI GGCGCC 1 cut(s) 544
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 709
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 184, 404, 736
TaiI ACGT 3 cut(s) 267, 338, 650
TaqI TCGA 5 cut(s) 26, 273, 390, 695, 752
TaqII GACCGA 1 cut(s) 238
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 3 cut(s) 104, 692, 740
Tru1I TTAA 3 cut(s) 96, 123, 459
Tru9I TTAA 3 cut(s) 96, 123, 459
TseFI GTSAC 2 cut(s) 466, 730
TseI GCWGC 2 cut(s) 91, 797
Tsp45I GTSAC 2 cut(s) 466, 730
TspDTI ATGAA 1 cut(s) 458
TspGWI ACGGA 2 cut(s) 481, 666
VneI GTGCAC 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 1 cut(s) 222
ZraI GACGTC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.