RLG00000019203

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001500
Physical Location & Seq
Reverse (-)
48312156 .. 48313058
903 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019203

Sequence Viewer

Length: 798 bp
ATGTTCCCGCAAATTTGTCCTCAGTTTGCCAAGATGTATTTTCCAATTTCTACTCTCTTGCTCTCCTCCTTCCTTTTCTCTTGTTCATCTGCTTTCAACATCACCAACATATTAAACGACCACAAAGATTTCAGCACCTTCAATGACTACTTAACCCGAACCACGGTTGCCGACCAGATCAACAAACGCGAGAGCCTCACAATCTTCGTAGTCGACAATGGTGGGATGGGTTCGGTCACTGGAAAATCATTGGACATGGTCGCAAAGATTTTGAGCCTCCACGTTGCCCTAGAGTACTTTGACACCTCAAAGCTCCAACACTTGCCGACAGACCAGCCAACCCTTATGACCACACTGCTTCAAGCCAACGGCCAAGCAACTGGCCAACAGGGTTTCTTGAAAGCCACAATCGGCGGTAACAGCAGCGAAGGAGGAGTCACGATTTCTTCAGCTTCTAGTTCTGATCAGAGCGCACATGTAGTCAGTAGTGTTACGAGTCAGCCGTATAACATTTCCGTGATCCAAATTAGCAATGCAATAATGCCTAATATCATCTCTCCACCAGCTGCAGCTCCTACTCATTTGCCTTCGAAAAGCCCAGCCAACTCTCCGAAATCAGCTTCGCCAAAGGGCTTGTTGGACTCTCCAAATGCGGCTCCAGGTACCGGTACTGCAGATGGTTCCACTGCAGCCTCTCCAGATGCTAAGTCATCTGGGACATCAGTGTTTTCCGTTACCTATGCTTTTGTCATCTCTGTAGTTTTGTTGTCCACTTTGTTTTTGATGAGACTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

266

Amino Acids

27.8

Weight (kDa)

6.49

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 662
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 189
AciI CCGC 3 cut(s) 8, 414, 653
AclWI GGATC 1 cut(s) 514
AcoI YGGCCR 2 cut(s) 370, 382
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 3 cut(s) 296, 664, 670
AfiI CCNNNNNNNGG 2 cut(s) 163, 665
AflIII ACRYGT 1 cut(s) 475
AgeI ACCGGT 1 cut(s) 665
AgsI TTSAA 4 cut(s) 97, 142, 362, 400
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 5 cut(s) 313, 452, 566, 572, 620
AluI AGCT 5 cut(s) 313, 452, 566, 572, 620
Alw26I GTCTC 1 cut(s) 781
AlwI GGATC 1 cut(s) 514
AoxI GGCC 2 cut(s) 370, 382
ApeKI GCWGC 4 cut(s) 423, 566, 569, 689
ApoI RAATTY 1 cut(s) 12
ArsI GACNNNNNNTTYG 2 cut(s) 420, 452
AsiGI ACCGGT 1 cut(s) 665
Asp718I GGTACC 1 cut(s) 662
AspLEI GCGC 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 94
AsuII TTCGAA 1 cut(s) 590
BalI TGGCCA 1 cut(s) 384
BanI GGYRCC 1 cut(s) 662
BbvI GCAGC 4 cut(s) 435, 553, 581, 701
BccI CCATC 2 cut(s) 220, 671
BceAI ACGGC 2 cut(s) 385, 487
BciT130I CCWGG 1 cut(s) 660
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 781
BfaI CTAG 2 cut(s) 290, 456
BfmI CTRYAG 4 cut(s) 567, 672, 687, 756
BisI GCNGC 5 cut(s) 424, 567, 570, 654, 690
BlsI GCNGC 5 cut(s) 425, 568, 571, 655, 691
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 660
BmiI GGNNCC 3 cut(s) 657, 664, 682
BmrFI CCNGG 1 cut(s) 660
BmsI GCATC 1 cut(s) 691
BpmI CTGGAG 2 cut(s) 642, 681
Bpu14I TTCGAA 1 cut(s) 590
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 665
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 665
Bse118I RCCGGY 1 cut(s) 665
Bse1I ACTGG 2 cut(s) 244, 385
Bse3DI GCAATG 1 cut(s) 538
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 163, 665
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 2 cut(s) 244, 385
BseRI GAGGAG 2 cut(s) 55, 447
BseXI GCAGC 4 cut(s) 435, 553, 581, 701
BseYI CCCAGC 1 cut(s) 598
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 2 cut(s) 372, 384
BshNI GGYRCC 1 cut(s) 662
BshTI ACCGGT 1 cut(s) 665
BsiSI CCGG 1 cut(s) 666
BslFI GGGAC 1 cut(s) 730
BslI CCNNNNNNNGG 2 cut(s) 163, 665
BsmAI GTCTC 1 cut(s) 781
BsmFI GGGAC 1 cut(s) 730
BsnI GGCC 2 cut(s) 372, 384
Bsp119I TTCGAA 1 cut(s) 590
Bsp143I GATC 3 cut(s) 177, 463, 519
BspACI CCGC 3 cut(s) 8, 414, 653
BspANI GGCC 2 cut(s) 372, 384
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 3 cut(s) 657, 664, 682
BspMAI CTGCAG 3 cut(s) 571, 676, 691
BspPI GGATC 1 cut(s) 514
BspT104I TTCGAA 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 665
BsrI ACTGG 2 cut(s) 244, 385
BssAI RCCGGY 1 cut(s) 665
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 3 cut(s) 177, 463, 519
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 590
BstDEI CTNAG 2 cut(s) 21, 705
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 231
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 3 cut(s) 180, 466, 522
BstMAI GTCTC 1 cut(s) 781
BstMBI GATC 3 cut(s) 177, 463, 519
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 4 cut(s) 567, 672, 687, 756
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 4 cut(s) 435, 553, 581, 701
BstXI CCANNNNNNTGG 1 cut(s) 380
BsuRI GGCC 2 cut(s) 372, 384
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 231
BtsI GCAGTG 2 cut(s) 353, 684
BtsIMutI CAGTG 4 cut(s) 237, 353, 684, 729
CfoI GCGC 1 cut(s) 473
Cfr10I RCCGGY 1 cut(s) 665
Csp6I GTAC 3 cut(s) 295, 663, 669
CspAI ACCGGT 1 cut(s) 665
CviAII CATG 3 cut(s) 256, 476, 795
CviQI GTAC 3 cut(s) 295, 663, 669
DdeI CTNAG 2 cut(s) 21, 705
DpnI GATC 3 cut(s) 179, 465, 521
DpnII GATC 3 cut(s) 177, 463, 519
EaeI YGGCCR 2 cut(s) 370, 382
Eco57I CTGAAG 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 658
FaeI CATG 3 cut(s) 259, 479, 798
FaiI YATR 7 cut(s) 110, 257, 347, 477, 507, 741, 796
FaqI GGGAC 1 cut(s) 730
FatI CATG 3 cut(s) 255, 475, 794
FauI CCCGC 1 cut(s) 15
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 5 cut(s) 424, 567, 570, 654, 690
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 5 cut(s) 424, 567, 570, 654, 690
FspBI CTAG 2 cut(s) 290, 456
GlaI GCGC 1 cut(s) 472
GluI GCNGC 5 cut(s) 424, 567, 570, 654, 690
GsaI CCCAGC 1 cut(s) 602
GsuI CTGGAG 2 cut(s) 642, 681
HaeIII GGCC 2 cut(s) 372, 384
HapII CCGG 1 cut(s) 666
HhaI GCGC 1 cut(s) 473
Hin1II CATG 3 cut(s) 259, 479, 798
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 3 cut(s) 435, 496, 641
HpaII CCGG 1 cut(s) 666
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 214, 771
Hpy188I TCNGA 3 cut(s) 463, 468, 612
Hpy188III TCNNGA 3 cut(s) 397, 439, 698
Hpy8I GTNNAC 2 cut(s) 214, 771
HpyAV CCTTC 4 cut(s) 79, 148, 422, 597
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 4 cut(s) 536, 569, 674, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 2 cut(s) 21, 705
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 3 cut(s) 259, 479, 798
HspAI GCGC 1 cut(s) 471
KpnI GGTACC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 177, 463, 519
LmnI GCTCC 3 cut(s) 318, 577, 661
Lsp1109I GCAGC 4 cut(s) 435, 553, 581, 701
LweI GCATC 1 cut(s) 691
MaeI CTAG 2 cut(s) 290, 456
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 5 cut(s) 235, 416, 436, 490, 733
MalI GATC 3 cut(s) 179, 465, 521
MboI GATC 3 cut(s) 177, 463, 519
MboII GAAGA 2 cut(s) 196, 438
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 3 cut(s) 12, 45, 525
MluNI TGGCCA 1 cut(s) 384
MlyI GAGTC 3 cut(s) 444, 505, 635
MmeI TCCRAC 2 cut(s) 340, 618
MnlI CCTC 7 cut(s) 30, 76, 206, 287, 316, 425, 703
Mox20I TGGCCA 1 cut(s) 384
MscI TGGCCA 1 cut(s) 384
MseI TTAA 2 cut(s) 113, 152
MslI CAYNNNNRTG 1 cut(s) 515
Msp20I TGGCCA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 1 cut(s) 666
MspR9I CCNGG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 660
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 420
NdeII GATC 3 cut(s) 177, 463, 519
NlaIII CATG 3 cut(s) 259, 479, 798
NlaIV GGNNCC 3 cut(s) 657, 664, 682
NmuCI GTSAC 2 cut(s) 235, 436
NspI RCATGY 1 cut(s) 479
NspV TTCGAA 1 cut(s) 590
PciI ACATGT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 500
PflFI GACNNNGTC 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 665
PkrI GCNGC 5 cut(s) 425, 568, 571, 655, 691
PleI GAGTC 3 cut(s) 443, 504, 635
PpsI GAGTC 3 cut(s) 443, 504, 635
PscI ACATGT 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 658
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 3 cut(s) 657, 664, 682
PstI CTGCAG 3 cut(s) 571, 676, 691
PsyI GACNNNGTC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 3 cut(s) 296, 664, 670
RsaNI GTAC 3 cut(s) 295, 663, 669
RseI CAYNNNNRTG 1 cut(s) 515
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 113, 152
SatI GCNGC 5 cut(s) 424, 567, 570, 654, 690
Sau3AI GATC 3 cut(s) 177, 463, 519
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 3 cut(s) 444, 505, 635
ScrFI CCNGG 1 cut(s) 660
SfaNI GCATC 1 cut(s) 691
SfcI CTRYAG 4 cut(s) 567, 672, 687, 756
SfuI TTCGAA 1 cut(s) 590
SmiMI CAYNNNNRTG 1 cut(s) 515
Sse9I AATT 3 cut(s) 12, 45, 525
SsiI CCGC 3 cut(s) 8, 414, 653
SspMI CTAG 2 cut(s) 290, 456
StyD4I CCNGG 1 cut(s) 658
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 213, 590
TaqII GACCGA 1 cut(s) 223
TasI AATT 3 cut(s) 12, 45, 525
TatI WGTACW 1 cut(s) 294
TauI GCSGC 1 cut(s) 656
Tru1I TTAA 2 cut(s) 113, 152
Tru9I TTAA 2 cut(s) 113, 152
TscAI CASTG 4 cut(s) 244, 360, 691, 729
TseFI GTSAC 2 cut(s) 235, 436
TseI GCWGC 4 cut(s) 423, 566, 569, 689
Tsp45I GTSAC 2 cut(s) 235, 436
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 2 cut(s) 505, 721
TspRI CASTG 4 cut(s) 244, 360, 691, 729
Tth111I GACNNNGTC 1 cut(s) 257
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 290, 456
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.