Rh6CG526900

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001500
Physical Location & Seq
Reverse (-)
68141480 .. 68142476
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG526900.1

Sequence Viewer

Length: 864 bp
ATGGAGGCCAATAAAACTAAAGCCTCGATGTTCTTCTTCGTTCTCTCCATGTTGTCCATAAGCTCTTGTTCGGCTTTCAACATCACGAAGCTGCTTAACAAAGAATCCGATTTCAGCACCTTTAACAAATACCTCTCCGAGACCAAACTCGCCGACCAGATCAACAAGCGAAGCACCATCACCGTCCTCGCCGTGGCCAACGACGCAATGGGCGGCCTCTCTAGCGACGACAGCTTCACCCTCAAGTCGGTCATGAGCGTCCACTTCATCCTCGACTACTACGACAAGGAGAAGTTGGCTAAGCTGGCCAAGATCAATAGAAGCGCCACGCTGACGTCTCTATTCCAGAGTTCGGGCGTGGCTCAAAACCAACAGGGCTTCGTTCGGGTCGAAGTCGTTGACGGTGAGATTATTTTCGGGTCAGCATCCAAGGGTGCACAAATGAACTCCAAGCTAGTTAAGTCGGTGACAGCTCAGCCCTACAACATTTCCGTGCTTGAGGTCAGTTCCATCATTGGGGTTCCCAACATCAATGCATCTCCGGCGCCCGAGAAGGCTCCGGCACCGAAGAAAGGCAAGTCTACCAGTCCGGAAGACGAGGCAGAGAGTCCTTCCGAAGACACCGCTGAAAGTCCCGCCGATGACACGTCCGACTCGGACTCGGAGGCTCCGAGTCCGTCCAAAGCCAGAGATTCGACTCCGCCCAAGCCAGGTTATGAGGATGATCTGGTGACGGCAGATTCGCCATCTTCGACTCCGGCACCTGCGCCCTCCAAGAATGATGCACGCGCCACCGCTGCTGAGATGGGAGTTGGGGTTGTTGCGATGGGGTTGGTTATTTCAGTATTGGTTGCTTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

287

Amino Acids

30.27

Weight (kDa)

4.86

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 37 - 112 6.4e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 772
AatII GACGTC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 772
AccB1I GGYRCC 3 cut(s) 544, 562, 760
AccI GTMKAC 1 cut(s) 581
AccII CGCG 1 cut(s) 789
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 5 cut(s) 213, 624, 636, 701, 795
AcoI YGGCCR 2 cut(s) 195, 306
AcyI GRCGYC 2 cut(s) 335, 545
AfiI CCNNNNNNNGG 6 cut(s) 193, 247, 352, 516, 572, 710
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 1 cut(s) 79
AjiI CACGTC 1 cut(s) 648
AjnI CCWGG 1 cut(s) 709
AluBI AGCT 6 cut(s) 63, 91, 234, 304, 454, 473
AluI AGCT 6 cut(s) 63, 91, 234, 304, 454, 473
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 2 cut(s) 134, 342
Alw44I GTGCAC 1 cut(s) 435
Ama87I CYCGRG 1 cut(s) 548
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 4 cut(s) 6, 195, 214, 306
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 91, 797
ArsI GACNNNNNNTTYG 2 cut(s) 724, 756
AspLEI GCGC 4 cut(s) 326, 547, 769, 791
AsuHPI GGTGA 5 cut(s) 172, 229, 416, 478, 742
AvaI CYCGRG 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 439
BalI TGGCCA 2 cut(s) 197, 308
BanI GGYRCC 3 cut(s) 544, 562, 760
BbsI GAAGAC 2 cut(s) 600, 624
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 78, 784
BccI CCATC 5 cut(s) 185, 518, 754, 799, 820
BceAI ACGGC 2 cut(s) 176, 750
BciT130I CCWGG 1 cut(s) 711
BcoDI GTCTC 2 cut(s) 134, 342
BfaI CTAG 2 cut(s) 222, 455
BfoI RGCGCY 2 cut(s) 327, 548
BfuAI ACCTGC 1 cut(s) 772
BisI GCNGC 3 cut(s) 92, 214, 798
BlpI GCTNAGC 2 cut(s) 300, 474
BlsI GCNGC 3 cut(s) 93, 215, 799
Bme1390I CCNGG 1 cut(s) 711
BmeT110I CYCGRG 1 cut(s) 548
BmgBI CACGTC 1 cut(s) 648
BmiI GGNNCC 6 cut(s) 522, 546, 558, 564, 669, 762
BmrFI CCNGG 1 cut(s) 711
BmsI GCATC 3 cut(s) 434, 545, 772
BpiI GAAGAC 2 cut(s) 600, 624
Bpu1102I GCTNAGC 2 cut(s) 300, 474
BpuEI CTTGAG 2 cut(s) 227, 518
BsaHI GRCGYC 2 cut(s) 335, 545
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 192, 429
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 6 cut(s) 193, 247, 352, 516, 572, 710
Bse1I ACTGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 213
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 1 cut(s) 711
BseDI CCNNGG 2 cut(s) 192, 429
BseGI GGATG 3 cut(s) 267, 425, 727
BseLI CCNNNNNNNGG 6 cut(s) 193, 247, 352, 516, 572, 710
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 488, 792
BseNI ACTGG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 2 cut(s) 78, 784
Bsh1236I CGCG 1 cut(s) 789
BshFI GGCC 4 cut(s) 8, 197, 216, 308
BshNI GGYRCC 3 cut(s) 544, 562, 760
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 4 cut(s) 542, 560, 590, 758
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 6 cut(s) 193, 247, 352, 516, 572, 710
BsmAI GTCTC 2 cut(s) 134, 342
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 618
BsnI GGCC 4 cut(s) 8, 197, 216, 308
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 439
Bsp13I TCCGGA 1 cut(s) 589
Bsp143I GATC 3 cut(s) 159, 312, 724
Bsp1720I GCTNAGC 2 cut(s) 300, 474
BspACI CCGC 5 cut(s) 213, 624, 636, 701, 795
BspANI GGCC 4 cut(s) 8, 197, 216, 308
BspCNI CTCAG 2 cut(s) 487, 793
BspEI TCCGGA 1 cut(s) 589
BspFNI CGCG 1 cut(s) 789
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 6 cut(s) 522, 546, 558, 564, 669, 762
BspMI ACCTGC 1 cut(s) 772
BspT107I GGYRCC 3 cut(s) 544, 562, 760
BspTNI GGTCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 585
BssECI CCNNGG 2 cut(s) 192, 429
BssMI GATC 3 cut(s) 159, 312, 724
BssNI GRCGYC 2 cut(s) 335, 545
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 2 cut(s) 184, 404
BstACI GRCGYC 2 cut(s) 335, 545
BstC8I GCNNGC 2 cut(s) 306, 787
BstDEI CTNAG 3 cut(s) 300, 474, 801
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 3 cut(s) 267, 425, 727
BstFNI CGCG 1 cut(s) 789
BstH2I RGCGCY 2 cut(s) 327, 548
BstHHI GCGC 4 cut(s) 326, 547, 769, 791
BstKTI GATC 3 cut(s) 162, 315, 727
BstMAI GTCTC 2 cut(s) 134, 342
BstMBI GATC 3 cut(s) 159, 312, 724
BstMWI GCNNNNNNNGC 6 cut(s) 203, 222, 231, 305, 542, 797
BstNI CCWGG 1 cut(s) 711
BstSCI CCNGG 1 cut(s) 709
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 1 cut(s) 789
BstV1I GCAGC 2 cut(s) 78, 784
BstV2I GAAGAC 2 cut(s) 600, 624
BsuRI GGCC 4 cut(s) 8, 197, 216, 308
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 839
BtrI CACGTC 1 cut(s) 648
BtsCI GGATG 3 cut(s) 267, 425, 727
BveI ACCTGC 1 cut(s) 772
Cac8I GCNNGC 2 cut(s) 306, 787
CciI TCATGA 1 cut(s) 252
CfoI GCGC 4 cut(s) 326, 547, 769, 791
CseI GACGC 2 cut(s) 212, 247
CviAII CATG 2 cut(s) 49, 253
DdeI CTNAG 3 cut(s) 300, 474, 801
DinI GGCGCC 1 cut(s) 546
DpnI GATC 3 cut(s) 161, 314, 726
DpnII GATC 3 cut(s) 159, 312, 724
EaeI YGGCCR 2 cut(s) 195, 306
EciI GGCGGA 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 429
Eco31I GGTCTC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 538
EgeI GGCGCC 1 cut(s) 546
EheI GGCGCC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 429
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 2 cut(s) 52, 256
FaiI YATR 4 cut(s) 50, 59, 254, 717
FaqI GGGAC 1 cut(s) 618
FatI CATG 2 cut(s) 48, 252
FauI CCCGC 1 cut(s) 643
FblI GTMKAC 1 cut(s) 581
Fnu4HI GCNGC 3 cut(s) 92, 214, 798
FokI GGATG 3 cut(s) 254, 412, 734
Fsp4HI GCNGC 3 cut(s) 92, 214, 798
FspBI CTAG 2 cut(s) 222, 455
GlaI GCGC 4 cut(s) 325, 546, 768, 790
GluI GCNGC 3 cut(s) 92, 214, 798
HaeII RGCGCY 2 cut(s) 327, 548
HaeIII GGCC 4 cut(s) 8, 197, 216, 308
HapII CCGG 4 cut(s) 542, 560, 590, 758
HgaI GACGC 2 cut(s) 212, 247
HhaI GCGC 4 cut(s) 326, 547, 769, 791
Hin1I GRCGYC 2 cut(s) 335, 545
Hin1II CATG 2 cut(s) 52, 256
Hin6I GCGC 4 cut(s) 324, 545, 767, 789
HinP1I GCGC 4 cut(s) 324, 545, 767, 789
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 9 cut(s) 104, 607, 653, 659, 673, 692, 697, 740, 754
HpaII CCGG 4 cut(s) 542, 560, 590, 758
HphI GGTGA 5 cut(s) 172, 229, 416, 478, 742
Hpy166II GTNNAC 4 cut(s) 262, 400, 437, 582
Hpy188I TCNGA 8 cut(s) 109, 139, 616, 652, 658, 664, 672, 863
Hpy188III TCNNGA 4 cut(s) 85, 253, 346, 590
Hpy8I GTNNAC 4 cut(s) 262, 400, 437, 582
Hpy99I CGWCG 2 cut(s) 206, 230
HpyAV CCTTC 2 cut(s) 547, 621
HpyCH4III ACNGT 2 cut(s) 184, 404
HpyCH4IV ACGT 2 cut(s) 335, 647
HpyCH4V TGCA 3 cut(s) 437, 536, 785
HpyF10VI GCNNNNNNNGC 6 cut(s) 203, 222, 231, 305, 542, 797
HpyF3I CTNAG 3 cut(s) 300, 474, 801
HpySE526I ACGT 2 cut(s) 335, 647
Hsp92I GRCGYC 2 cut(s) 335, 545
Hsp92II CATG 2 cut(s) 52, 256
HspAI GCGC 4 cut(s) 324, 545, 767, 789
KasI GGCGCC 1 cut(s) 544
Kpn2I TCCGGA 1 cut(s) 589
Kzo9I GATC 3 cut(s) 159, 312, 724
LmnI GCTCC 2 cut(s) 562, 673
Lsp1109I GCAGC 2 cut(s) 78, 784
LweI GCATC 3 cut(s) 434, 545, 772
MaeI CTAG 2 cut(s) 222, 455
MaeII ACGT 2 cut(s) 335, 647
MaeIII GTNAC 2 cut(s) 466, 730
MalI GATC 3 cut(s) 161, 314, 726
MboI GATC 3 cut(s) 159, 312, 724
MboII GAAGA 6 cut(s) 25, 28, 580, 605, 629, 741
MhlI GDGCHC 1 cut(s) 439
MlsI TGGCCA 2 cut(s) 197, 308
MluNI TGGCCA 2 cut(s) 197, 308
Mly113I GGCGCC 1 cut(s) 545
MlyI GAGTC 6 cut(s) 616, 647, 653, 682, 691, 748
MmeI TCCRAC 1 cut(s) 675
Mox20I TGGCCA 2 cut(s) 197, 308
Mph1103I ATGCAT 1 cut(s) 538
MroI TCCGGA 1 cut(s) 589
MscI TGGCCA 2 cut(s) 197, 308
MseI TTAA 3 cut(s) 96, 123, 459
MslI CAYNNNNRTG 1 cut(s) 491
Msp20I TGGCCA 2 cut(s) 197, 308
MspA1I CMGCKG 2 cut(s) 626, 797
MspI CCGG 4 cut(s) 542, 560, 590, 758
MspR9I CCNGG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 711
MvnI CGCG 1 cut(s) 789
MwoI GCNNNNNNNGC 6 cut(s) 203, 222, 231, 305, 542, 797
NarI GGCGCC 1 cut(s) 545
NdeII GATC 3 cut(s) 159, 312, 724
NlaIII CATG 2 cut(s) 52, 256
NlaIV GGNNCC 6 cut(s) 522, 546, 558, 564, 669, 762
NmuCI GTSAC 2 cut(s) 466, 730
NsiI ATGCAT 1 cut(s) 538
PagI TCATGA 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 772
PcsI WCGNNNNNNNCGW 4 cut(s) 279, 387, 668, 749
PfeI GAWTC 3 cut(s) 104, 692, 740
PkrI GCNGC 3 cut(s) 93, 215, 799
PleI GAGTC 6 cut(s) 615, 647, 653, 681, 691, 748
PluTI GGCGCC 1 cut(s) 548
PpsI GAGTC 6 cut(s) 615, 647, 653, 681, 691, 748
Psp6I CCWGG 1 cut(s) 709
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 6 cut(s) 522, 546, 558, 564, 669, 762
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 3 cut(s) 96, 123, 459
SatI GCNGC 3 cut(s) 92, 214, 798
Sau3AI GATC 3 cut(s) 159, 312, 724
SchI GAGTC 6 cut(s) 616, 647, 653, 682, 691, 748
ScrFI CCNGG 1 cut(s) 711
SduI GDGCHC 1 cut(s) 439
SfaNI GCATC 3 cut(s) 434, 545, 772
SfoI GGCGCC 1 cut(s) 546
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 242, 497
SmoI CTYRAG 2 cut(s) 242, 497
SsiI CCGC 5 cut(s) 213, 624, 636, 701, 795
SspDI GGCGCC 1 cut(s) 544
SspMI CTAG 2 cut(s) 222, 455
StyD4I CCNGG 1 cut(s) 709
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 184, 404
TaiI ACGT 2 cut(s) 338, 650
TaqI TCGA 5 cut(s) 26, 273, 390, 695, 752
TaqII GACCGA 1 cut(s) 238
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 3 cut(s) 104, 692, 740
Tru1I TTAA 3 cut(s) 96, 123, 459
Tru9I TTAA 3 cut(s) 96, 123, 459
TseFI GTSAC 2 cut(s) 466, 730
TseI GCWGC 2 cut(s) 91, 797
Tsp45I GTSAC 2 cut(s) 466, 730
TspDTI ATGAA 2 cut(s) 256, 458
TspGWI ACGGA 2 cut(s) 481, 666
VneI GTGCAC 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 581
XspI CTAG 2 cut(s) 222, 455
ZraI GACGTC 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.