Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001500

Physical Location & Seq

Genomic Coordinates Reverse (-)

67563793 .. 67564723

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGACAGGAAAGCCTCTTCCATCGTCTTCCTCGCTTTCTGTTTGGTCGCATCGGCCTCGGCCTTCGACATCCTGAAGCTCCTCCAGAAGGACTCCGAGCTGAGCGAGTTCAGCAAGCTCCTCAAGGAAACCAAACTCGCCGATCAAATCAACGAACGCAAAAGCATCACAGTCCTCGCAGTTGGCAATGGTGGTGTCTCCGCCCTCTCCAATGTGTCCCCCGATGAGGTCAAGATGCTCTTGAGCGCCCACGTGGTGCTCGACTACTTCGATCAGCAGAAGCTAAAAGGAACGGTAAAAAAAGAGCCCACAACCGTGACCACAATGCTCCAAGCCACAGGCAAGGCTCAGCACCAACAGGGATTCATTAAAGTCGGCCTCGTCAAAGGAGAGATCGCTTTTGGGTCAGCAGTCAAGGGTGCTAAAATGGATTCCAAGCTTATTAAGTCTGTCACTTCTCAGCCTTTTGACATCTCTGTGCTTAAAGTCAGTTCTCTTATTGAGATTCCTGACCTTGGTTCTGCAAGCGCCCCCAAGAAGGCTCCATCACCATCTGAAGATGATGACACTGCTCCGGCACCATCTGAAGATGATAACACTGCTGCTCCGGCACCATCTGAAGATGATGACACTGCTGCTCCGGCACCATCTGAAGATGACGAAACAGACTTCTCATCGCCACCAGAGCCCGAAGACTCACCAACAGAAGCACCAGAGAATGCACCAGAGAAATCACCACAGAAAGCACCAGAGAAAGAGAAACCATCTGCTACTGCTCCTGCTCCCTCGGCTGCTTCGCGTGTCGAGATGGCTCTTGGTGCTGGGCTCGTAATGGGTTTGGCTTCACTTTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

285

Amino Acids

29.76

Weight (kDa)

4.68

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	33 - 119	2.6e-06	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12660
fragaria_vesca	FvH4_2g30720 FvH4_2g30730 FvH4_2g30760 FvH4_6g28020
malus_domestica	MD08G1131800.v1.1 MD08G1134300.v1.1 MD15G1109400.v1.1 MD15G1109500.v1.1
prunus_persica	Prupe.1G461700_v2.0.a1 Prupe.1G461800_v2.0.a1
pyrus_communis	pycom08g11330 pycom15g09970
rosa_chinensis	RchiOBHm_Chr2g0131711 RchiOBHm_Chr6g0312141 RchiOBHm_Chr6g0312161
rosa_laevigata	RLG00000010348 RLG00000010349 RLG00000010351 RLG00000019203
rosa_multiflora	Rmu_sc0002589.1_g000028 Rmu_sc0004065.1_g000005 Rmu_sc0009794.1_g000007 Rmu_sc0009880.1_g000016 Rmu_sc0036403.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112680 Rroxscaffold_7G00156990 Rroxscaffold_7G00157000
rosa_rugosa	Rorug02G0299200 Rorug06G0393000 Rorug06G0393100 Rorug06G0393300
rosa_samantha	Rh2AG351800 Rh2BG358800 Rh2CG337300 Rh6AG510000 Rh6AG510300 Rh6AG510400 Rh6BG520900 Rh6BG521200 Rh6BG521300 Rh6CG526900 Rh6CG527100 Rh6CG527200 Rh6DG512200 Rh6DG512500 Rh6DG512600
rosa_wichuraiana	Rw2G028570 Rw6G044370 Rw6G044390 Rw6G044400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	577, 610, 643
AccII	CGCG	1 cut(s)	799
AciI	CCGC	1 cut(s)	201
AcuI	CTGAAG	5 cut(s)	95, 576, 606, 639, 672
AcvI	CACGTG	1 cut(s)	253
AdeI	CACNNNGTG	1 cut(s)	256
AfiI	CCNNNNNNNGG	4 cut(s)	88, 226, 515, 538
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	5 cut(s)	79, 100, 118, 283, 439
AluI	AGCT	5 cut(s)	79, 100, 118, 283, 439
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	202
AoxI	GGCC	3 cut(s)	54, 60, 376
ApeKI	GCWGC	3 cut(s)	602, 635, 791
AspLEI	GCGC	2 cut(s)	248, 530
AsuHPI	GGTGA	3 cut(s)	540, 690, 726
BanI	GGYRCC	3 cut(s)	577, 610, 643
BanII	GRGCYC	3 cut(s)	309, 690, 828
BbrPI	CACGTG	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	19, 699
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	589, 622, 778
BccI	CCATC	8 cut(s)	29, 553, 559, 589, 622, 655, 772, 802
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BcoDI	GTCTC	1 cut(s)	202
BfoI	RGCGCY	2 cut(s)	249, 531
BisI	GCNGC	3 cut(s)	603, 636, 792
BlpI	GCTNAGC	2 cut(s)	101, 348
BlsI	GCNGC	3 cut(s)	604, 637, 793
BmiI	GGNNCC	4 cut(s)	543, 579, 612, 645
BmsI	GCATC	3 cut(s)	59, 174, 225
BpiI	GAAGAC	2 cut(s)	19, 699
BpmI	CTGGAG	1 cut(s)	68
Bpu1102I	GCTNAGC	2 cut(s)	101, 348
BpuEI	CTTGAG	2 cut(s)	107, 262
BsaAI	YACGTR	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	57, 514, 786
BsaXI	ACNNNNNCTCC	4 cut(s)	589, 619, 622, 652
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 226, 515, 538
Bse3DI	GCAATG	1 cut(s)	193
BseDI	CCNNGG	3 cut(s)	57, 514, 786
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	4 cut(s)	88, 226, 515, 538
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	3 cut(s)	92, 362, 473
BseRI	GAGGAG	2 cut(s)	71, 110
BseXI	GCAGC	3 cut(s)	589, 622, 778
BseYI	CCCAGC	1 cut(s)	821
Bsh1236I	CGCG	1 cut(s)	799
BshFI	GGCC	3 cut(s)	56, 62, 378
BshNI	GGYRCC	3 cut(s)	577, 610, 643
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	575, 608, 641
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	4 cut(s)	88, 226, 515, 538
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	3 cut(s)	56, 62, 378
Bsp1286I	GDGCHC	4 cut(s)	261, 309, 690, 828
Bsp143I	GATC	3 cut(s)	142, 271, 393
Bsp1720I	GCTNAGC	2 cut(s)	101, 348
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	56, 62, 378
BspCNI	CTCAG	3 cut(s)	93, 361, 472
BspFNI	CGCG	1 cut(s)	799
BspLI	GGNNCC	4 cut(s)	543, 579, 612, 645
BspT107I	GGYRCC	3 cut(s)	577, 610, 643
BsrDI	GCAATG	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	57, 514, 786
BssMI	GATC	3 cut(s)	142, 271, 393
BssT1I	CCWWGG	1 cut(s)	514
Bst4CI	ACNGT	3 cut(s)	172, 295, 316
Bst6I	CTCTTC	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	116, 526
BstDEI	CTNAG	3 cut(s)	101, 348, 459
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	799
BstH2I	RGCGCY	2 cut(s)	249, 531
BstHHI	GCGC	2 cut(s)	248, 530
BstKTI	GATC	3 cut(s)	145, 274, 396
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	142, 271, 393
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 608, 641, 685, 788, 818
BstUI	CGCG	1 cut(s)	799
BstV1I	GCAGC	3 cut(s)	589, 622, 778
BstV2I	GAAGAC	2 cut(s)	19, 699
BsuRI	GGCC	3 cut(s)	56, 62, 378
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	3 cut(s)	567, 597, 630
BtsIMutI	CAGTG	3 cut(s)	567, 597, 630
Cac8I	GCNNGC	2 cut(s)	116, 526
CfoI	GCGC	2 cut(s)	248, 530
DdeI	CTNAG	3 cut(s)	101, 348, 459
DpnI	GATC	3 cut(s)	144, 273, 395
DpnII	GATC	3 cut(s)	142, 271, 393
DraIII	CACNNNGTG	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	514
Eco24I	GRGCYC	3 cut(s)	309, 690, 828
Eco57I	CTGAAG	5 cut(s)	95, 576, 606, 639, 672
Eco72I	CACGTG	1 cut(s)	253
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	514
EcoT38I	GRGCYC	3 cut(s)	309, 690, 828
ErhI	CCWWGG	1 cut(s)	514
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	603, 636, 792
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	3 cut(s)	309, 690, 828
Fsp4HI	GCNGC	3 cut(s)	603, 636, 792
GlaI	GCGC	2 cut(s)	247, 529
GluI	GCNGC	3 cut(s)	603, 636, 792
GsaI	CCCAGC	1 cut(s)	825
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	2 cut(s)	249, 531
HaeIII	GGCC	3 cut(s)	56, 62, 378
HapII	CCGG	3 cut(s)	575, 608, 641
HhaI	GCGC	2 cut(s)	248, 530
Hin6I	GCGC	2 cut(s)	246, 528
HinP1I	GCGC	2 cut(s)	246, 528
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	5 cut(s)	92, 363, 431, 505, 695
HpaII	CCGG	3 cut(s)	575, 608, 641
HphI	GGTGA	3 cut(s)	540, 690, 726
Hpy188I	TCNGA	5 cut(s)	97, 556, 586, 619, 652
Hpy188III	TCNNGA	6 cut(s)	73, 85, 232, 241, 509, 805
HpyAV	CCTTC	3 cut(s)	73, 82, 532
HpyCH4III	ACNGT	3 cut(s)	172, 295, 316
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	524, 722
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 608, 641, 685, 788, 818
HpyF3I	CTNAG	3 cut(s)	101, 348, 459
HpySE526I	ACGT	1 cut(s)	252
HspAI	GCGC	2 cut(s)	246, 528
Kzo9I	GATC	3 cut(s)	142, 271, 393
LmnI	GCTCC	9 cut(s)	84, 123, 333, 547, 577, 610, 643, 781, 787
Lsp1109I	GCAGC	3 cut(s)	589, 622, 778
LweI	GCATC	3 cut(s)	59, 174, 225
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	316, 451
MalI	GATC	3 cut(s)	144, 273, 395
MboI	GATC	3 cut(s)	142, 271, 393
MboII	GAAGA	7 cut(s)	9, 19, 569, 599, 632, 665, 704
MhlI	GDGCHC	4 cut(s)	261, 309, 690, 828
MlyI	GAGTC	2 cut(s)	86, 689
MseI	TTAA	4 cut(s)	369, 444, 483, 856
MslI	CAYNNNNRTG	2 cut(s)	314, 476
MspI	CCGG	3 cut(s)	575, 608, 641
Mva1269I	GAATGC	1 cut(s)	724
MvnI	CGCG	1 cut(s)	799
MwoI	GCNNNNNNNGC	6 cut(s)	111, 608, 641, 685, 788, 818
NdeII	GATC	3 cut(s)	142, 271, 393
NlaIV	GGNNCC	4 cut(s)	543, 579, 612, 645
NmeAIII	GCCGAG	2 cut(s)	38, 767
NmuCI	GTSAC	2 cut(s)	316, 451
OliI	CACNNNNGTG	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 267
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	3 cut(s)	363, 431, 505
PkrI	GCNGC	3 cut(s)	604, 637, 793
PleI	GAGTC	2 cut(s)	86, 689
PmaCI	CACGTG	1 cut(s)	253
PmlI	CACGTG	1 cut(s)	253
PpsI	GAGTC	2 cut(s)	86, 689
Ppu21I	YACGTR	1 cut(s)	253
PspCI	CACGTG	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	821
PspN4I	GGNNCC	4 cut(s)	543, 579, 612, 645
RseI	CAYNNNNRTG	2 cut(s)	314, 476
SaqAI	TTAA	4 cut(s)	369, 444, 483, 856
SatI	GCNGC	3 cut(s)	603, 636, 792
Sau3AI	GATC	3 cut(s)	142, 271, 393
SchI	GAGTC	2 cut(s)	86, 689
SduI	GDGCHC	4 cut(s)	261, 309, 690, 828
SetI	ASST	8 cut(s)	81, 102, 120, 231, 255, 285, 441, 516
SfaNI	GCATC	3 cut(s)	59, 174, 225
SmiMI	CAYNNNNRTG	2 cut(s)	314, 476
SmlI	CTYRAG	2 cut(s)	122, 241
SmoI	CTYRAG	2 cut(s)	122, 241
SsiI	CCGC	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	3 cut(s)	172, 295, 316
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	4 cut(s)	66, 261, 270, 804
TfiI	GAWTC	3 cut(s)	363, 431, 505
Tru1I	TTAA	4 cut(s)	369, 444, 483, 856
Tru9I	TTAA	4 cut(s)	369, 444, 483, 856
TscAI	CASTG	3 cut(s)	574, 604, 637
TseFI	GTSAC	2 cut(s)	316, 451
TseI	GCWGC	3 cut(s)	602, 635, 791
Tsp45I	GTSAC	2 cut(s)	316, 451
TspDTI	ATGAA	1 cut(s)	355
TspRI	CASTG	3 cut(s)	574, 604, 637
XagI	CCTNNNNNAGG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.