RchiOBHm_Chr6g0312141

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001500
Physical Location & Seq
Reverse (-)
68857460 .. 68858296
837 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28077

Sequence Viewer

Length: 837 bp
ATGTTCTTCTTCGTTCTCTCCATGTTGTCCATAAGCTCTTGTTCGGCTTTCAACATCACGAAGCTGCTTAACAAAGAATCCGATTTCAGCACCTTTAACAAATACCTCTCCGAGACCAAACTCGCCGACCAGATCAACAAGCGAAGCACCATCACCGTCCTCGCCGTGGCCAACGACGCAATGGGCGGCCTCTCTAGCGACGACAGCTTCACCCTCAAGTCGGTCATGAGCGTCCACGTCATCCTCGACTACTACGACAAGGAGAAGTTGGCTAAGCTGGCCAAGAACAATAGAAGCGCCATGCTGACGTCTCTATTCCAGAGTTCGGGCGTGGCTCAAAACCAACAGGGCTACGTTCGGGTCGAAGTCGTTGACGGTGAGATTTTTTTCGGGTCAGCATCCAAGGGTGCACAAATGAACTCCAAGATAGTTAAGTCGGTGACAGCTCAGCCCTACAACATTTCCGTGCTTGAGGTCAGCTCCATCATTGGGGTTCCCAACATCAATGCTTCTCCGACGCCCGAGAAAGCTCCATCACCGAAGAAAGGCAAGTCTGCCAGTCTGGAAGACGAGGCAGAGAGCCCTTCCGAAGACACCGCTGAAAGTCCTGCCGATGACACGTCGGACTCGGACTCGGAGGCTCCAAGTCCGTCCAAAGCCAGAGATTCGACTCCACCCAAGCCAGGTTATGAGGATGATCTGGTGACGGCAGATTCGCCATCTTCGACTCCGGCACCTGCGCCCTCCAAGAATGATGCACGCGCCACCGCTGCTGAGGTGGGAGTTGGGGTTGTTGCGATGGGGTTGGTTATTTCAGTATTGGTTGCTTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

278

Amino Acids

29.34

Weight (kDa)

4.76

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 28 - 137 6.4e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
AatII GACGTC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 745
AccB1I GGYRCC 1 cut(s) 733
AccII CGCG 1 cut(s) 762
AciI CCGC 3 cut(s) 186, 597, 768
AcoI YGGCCR 2 cut(s) 168, 279
AcyI GRCGYC 2 cut(s) 308, 518
AfiI CCNNNNNNNGG 6 cut(s) 166, 220, 325, 489, 545, 683
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 1 cut(s) 52
AjiI CACGTC 2 cut(s) 238, 621
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 7 cut(s) 36, 64, 207, 277, 446, 480, 530
AluI AGCT 7 cut(s) 36, 64, 207, 277, 446, 480, 530
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 2 cut(s) 107, 315
Alw44I GTGCAC 1 cut(s) 408
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 3 cut(s) 168, 187, 279
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 64, 770
ArsI GACNNNNNNTTYG 2 cut(s) 697, 729
AspLEI GCGC 3 cut(s) 299, 742, 764
AsuHPI GGTGA 6 cut(s) 145, 202, 389, 451, 528, 715
AvaI CYCGRG 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 412
BalI TGGCCA 2 cut(s) 170, 281
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 1 cut(s) 584
BbsI GAAGAC 2 cut(s) 573, 597
Bbv12I GWGCWC 1 cut(s) 412
BbvCI CCTCAGC 1 cut(s) 774
BbvI GCAGC 2 cut(s) 51, 757
BccI CCATC 5 cut(s) 158, 491, 541, 727, 793
BceAI ACGGC 2 cut(s) 149, 723
BciT130I CCWGG 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 107, 315
BfaI CTAG 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 745
BisI GCNGC 3 cut(s) 65, 187, 771
BlpI GCTNAGC 2 cut(s) 273, 447
BlsI GCNGC 3 cut(s) 66, 188, 772
Bme1390I CCNGG 1 cut(s) 684
BmeT110I CYCGRG 1 cut(s) 521
BmgBI CACGTC 2 cut(s) 238, 621
BmiI GGNNCC 3 cut(s) 495, 642, 735
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 2 cut(s) 407, 745
BpiI GAAGAC 2 cut(s) 573, 597
BplI GAGNNNNNCTC 2 cut(s) 464, 496
Bpu10I CCTNAGC 1 cut(s) 774
Bpu1102I GCTNAGC 2 cut(s) 273, 447
BpuEI CTTGAG 2 cut(s) 200, 491
BsaHI GRCGYC 2 cut(s) 308, 518
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 165, 402
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bsc4I CCNNNNNNNGG 6 cut(s) 166, 220, 325, 489, 545, 683
Bse1I ACTGG 1 cut(s) 558
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 165, 402
BseGI GGATG 3 cut(s) 240, 398, 700
BseLI CCNNNNNNNGG 6 cut(s) 166, 220, 325, 489, 545, 683
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 461, 765
BseNI ACTGG 1 cut(s) 558
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 2 cut(s) 51, 757
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 3 cut(s) 170, 189, 281
BshNI GGYRCC 1 cut(s) 733
BsiHKAI GWGCWC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 1 cut(s) 731
BslI CCNNNNNNNGG 6 cut(s) 166, 220, 325, 489, 545, 683
BsmAI GTCTC 2 cut(s) 107, 315
BsmBI CGTCTC 1 cut(s) 315
BsnI GGCC 3 cut(s) 170, 189, 281
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 412, 584
Bsp143I GATC 2 cut(s) 132, 697
Bsp1720I GCTNAGC 2 cut(s) 273, 447
BspACI CCGC 3 cut(s) 186, 597, 768
BspANI GGCC 3 cut(s) 170, 189, 281
BspCNI CTCAG 2 cut(s) 460, 766
BspFNI CGCG 1 cut(s) 762
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 495, 642, 735
BspMI ACCTGC 1 cut(s) 745
BspT107I GGYRCC 1 cut(s) 733
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 1 cut(s) 558
BssECI CCNNGG 2 cut(s) 165, 402
BssMI GATC 2 cut(s) 132, 697
BssNI GRCGYC 2 cut(s) 308, 518
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 2 cut(s) 157, 377
BstACI GRCGYC 2 cut(s) 308, 518
BstC8I GCNNGC 2 cut(s) 279, 760
BstDEI CTNAG 3 cut(s) 273, 447, 774
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 240, 398, 700
BstFNI CGCG 1 cut(s) 762
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 3 cut(s) 299, 742, 764
BstKTI GATC 2 cut(s) 135, 700
BstMAI GTCTC 2 cut(s) 107, 315
BstMBI GATC 2 cut(s) 132, 697
BstMWI GCNNNNNNNGC 5 cut(s) 176, 195, 204, 278, 770
BstNI CCWGG 1 cut(s) 684
BstSCI CCNGG 1 cut(s) 682
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 2 cut(s) 51, 757
BstV2I GAAGAC 2 cut(s) 573, 597
BsuRI GGCC 3 cut(s) 170, 189, 281
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 812
BtrI CACGTC 2 cut(s) 238, 621
BtsCI GGATG 3 cut(s) 240, 398, 700
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 2 cut(s) 279, 760
CciI TCATGA 1 cut(s) 225
CfoI GCGC 3 cut(s) 299, 742, 764
CseI GACGC 3 cut(s) 185, 220, 526
CviAII CATG 3 cut(s) 22, 226, 301
DdeI CTNAG 3 cut(s) 273, 447, 774
DpnI GATC 2 cut(s) 134, 699
DpnII GATC 2 cut(s) 132, 697
EaeI YGGCCR 2 cut(s) 168, 279
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 584
Eco31I GGTCTC 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 682
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 584
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 3 cut(s) 25, 229, 304
FaiI YATR 5 cut(s) 23, 32, 227, 302, 690
FatI CATG 3 cut(s) 21, 225, 300
Fnu4HI GCNGC 3 cut(s) 65, 187, 771
FokI GGATG 3 cut(s) 227, 385, 707
FriOI GRGCYC 1 cut(s) 584
Fsp4HI GCNGC 3 cut(s) 65, 187, 771
FspBI CTAG 1 cut(s) 195
GlaI GCGC 3 cut(s) 298, 741, 763
GluI GCNGC 3 cut(s) 65, 187, 771
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 3 cut(s) 170, 189, 281
HapII CCGG 1 cut(s) 731
HgaI GACGC 3 cut(s) 185, 220, 526
HhaI GCGC 3 cut(s) 299, 742, 764
Hin1I GRCGYC 2 cut(s) 308, 518
Hin1II CATG 3 cut(s) 25, 229, 304
Hin6I GCGC 3 cut(s) 297, 740, 762
HinP1I GCGC 3 cut(s) 297, 740, 762
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 7 cut(s) 77, 626, 632, 665, 670, 713, 727
HpaII CCGG 1 cut(s) 731
HphI GGTGA 6 cut(s) 145, 202, 389, 451, 528, 715
Hpy166II GTNNAC 3 cut(s) 235, 373, 410
Hpy188I TCNGA 8 cut(s) 82, 112, 516, 589, 625, 631, 637, 836
Hpy188III TCNNGA 4 cut(s) 58, 226, 319, 563
Hpy8I GTNNAC 3 cut(s) 235, 373, 410
Hpy99I CGWCG 4 cut(s) 179, 203, 520, 625
HpyAV CCTTC 1 cut(s) 594
HpyCH4III ACNGT 2 cut(s) 157, 377
HpyCH4IV ACGT 4 cut(s) 237, 308, 354, 620
HpyCH4V TGCA 2 cut(s) 410, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 195, 204, 278, 770
HpyF3I CTNAG 3 cut(s) 273, 447, 774
HpySE526I ACGT 4 cut(s) 237, 308, 354, 620
Hsp92I GRCGYC 2 cut(s) 308, 518
Hsp92II CATG 3 cut(s) 25, 229, 304
HspAI GCGC 3 cut(s) 297, 740, 762
Kzo9I GATC 2 cut(s) 132, 697
LmnI GCTCC 3 cut(s) 485, 535, 646
Lsp1109I GCAGC 2 cut(s) 51, 757
LweI GCATC 2 cut(s) 407, 745
MaeI CTAG 1 cut(s) 195
MaeII ACGT 4 cut(s) 237, 308, 354, 620
MaeIII GTNAC 2 cut(s) 439, 703
MalI GATC 2 cut(s) 134, 699
MboI GATC 2 cut(s) 132, 697
MboII GAAGA 4 cut(s) 553, 578, 602, 714
MhlI GDGCHC 2 cut(s) 412, 584
MlsI TGGCCA 2 cut(s) 170, 281
MluNI TGGCCA 2 cut(s) 170, 281
MlyI GAGTC 4 cut(s) 620, 626, 664, 721
MmeI TCCRAC 2 cut(s) 539, 603
Mox20I TGGCCA 2 cut(s) 170, 281
MscI TGGCCA 2 cut(s) 170, 281
MseI TTAA 3 cut(s) 69, 96, 432
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 2 cut(s) 170, 281
MspA1I CMGCKG 2 cut(s) 599, 770
MspI CCGG 1 cut(s) 731
MspR9I CCNGG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 684
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 5 cut(s) 176, 195, 204, 278, 770
NdeII GATC 2 cut(s) 132, 697
NlaIII CATG 3 cut(s) 25, 229, 304
NlaIV GGNNCC 3 cut(s) 495, 642, 735
NmuCI GTSAC 2 cut(s) 439, 703
PagI TCATGA 1 cut(s) 225
PaqCI CACCTGC 1 cut(s) 745
PcsI WCGNNNNNNNCGW 4 cut(s) 243, 252, 360, 722
PfeI GAWTC 3 cut(s) 77, 665, 713
PkrI GCNGC 3 cut(s) 66, 188, 772
PleI GAGTC 4 cut(s) 620, 626, 664, 721
PpsI GAGTC 4 cut(s) 620, 626, 664, 721
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 3 cut(s) 495, 642, 735
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 3 cut(s) 69, 96, 432
SatI GCNGC 3 cut(s) 65, 187, 771
Sau3AI GATC 2 cut(s) 132, 697
SchI GAGTC 4 cut(s) 620, 626, 664, 721
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 2 cut(s) 412, 584
SfaNI GCATC 2 cut(s) 407, 745
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 215, 470
SmoI CTYRAG 2 cut(s) 215, 470
SsiI CCGC 3 cut(s) 186, 597, 768
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 682
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 157, 377
TaiI ACGT 4 cut(s) 240, 311, 357, 623
TaqI TCGA 4 cut(s) 246, 363, 668, 725
TaqII GACCGA 1 cut(s) 211
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 3 cut(s) 77, 665, 713
Tru1I TTAA 3 cut(s) 69, 96, 432
Tru9I TTAA 3 cut(s) 69, 96, 432
TseFI GTSAC 2 cut(s) 439, 703
TseI GCWGC 2 cut(s) 64, 770
Tsp45I GTSAC 2 cut(s) 439, 703
TspDTI ATGAA 1 cut(s) 431
TspGWI ACGGA 2 cut(s) 454, 639
VneI GTGCAC 1 cut(s) 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 1 cut(s) 195
ZraI GACGTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.