FvH4_2g30720

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001500
Physical Location & Seq
Forward (+)
23733923 .. 23735156
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30720.t1

Sequence Viewer

Length: 831 bp
ATGGATAGGATGAGAGCCTCTTCCATCATCTTCCTCTCTTTCGTTTTGGTGGCCTCAACCTCGGCCATCGACATCCTGAAGCTCCTCGAGAAGGAGTCCGACTTCAGCACATTCAGAACTGCCCTCAAGGATTCCAAGCTCGCCGACGACATCAACAACCACGGCAGCAGCATCACCGTCCTCGCAGTTGCCAACGGTGCCGCCTCCGCCCTCTCCGGCTTGTCCCCCGATGAGGCCAAGAAGCTCTTGGCTACCCACGTGTTGCTCGACTACTTTGATGAGGCGAAACTGAAAGGATTAGCGAAGAAAGACAAGCCCTCAACTGTGGTCACGATGTTGCAAACCACCGGCGAGGCTCAGCACCAGCAGGGAATGGTGAATGTCGGCGTGCTTAAGAGTGGAGAGGTCGCTTTCGGTTCAGCTGTCCATGGAGGTGGCTTGGATTCCAAGTATATCAAGTCTGTCACTGCTCAGCCTTACAACATCTCTGTCCTTCAAGTCAGTTCTCTTATTGAGATTCCTGACCTAAGCCCTGGTGCTGCACCCAAGGCAGCTCCACCAGCTGAAGACGACAGCGATGAAGCCGCCGCTCCCTCACCTGATGATGACGGCACCGCTCCCTCACCTGATGATGAAGACCCAACACTCTCATCGCCACCAGTGTCCGGAGACTCACCAACAGAAGCACCAGAGGCAGCAACAGAGAAGACTCCAGAGGAGAAACCAGCTCATGGTGAGCATGCACCTGCTCCGGCTCCTTCGGCTGCTTCGCGCGTCGAGATGACTCTTGGTGCCGGGCTCGTGATGGCTTTGGCTTCACTTTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

277

Amino Acids

28.4

Weight (kDa)

4.59

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 34 - 120 1.2e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 754
Acc36I ACCTGC 1 cut(s) 754
AccB1I GGYRCC 3 cut(s) 197, 611, 791
AccB7I CCANNNNNTGG 1 cut(s) 731
AccBSI CCGCTC 2 cut(s) 590, 617
AccII CGCG 2 cut(s) 772, 774
AccIII TCCGGA 1 cut(s) 665
AciI CCGC 5 cut(s) 201, 207, 585, 588, 615
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 3 cut(s) 88, 98, 585
AcvI CACGTG 1 cut(s) 259
AfiI CCNNNNNNNGG 4 cut(s) 91, 232, 665, 731
AflII CTTAAG 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 497
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 7 cut(s) 82, 139, 244, 422, 554, 563, 728
AluI AGCT 7 cut(s) 82, 139, 244, 422, 554, 563, 728
Alw26I GTCTC 1 cut(s) 663
Ama87I CYCGRG 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 665
AoxI GGCC 3 cut(s) 51, 63, 234
ApeKI GCWGC 6 cut(s) 165, 168, 539, 551, 695, 764
AspLEI GCGC 1 cut(s) 774
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 6 cut(s) 166, 388, 588, 615, 666, 746
AvaI CYCGRG 1 cut(s) 86
BanI GGYRCC 3 cut(s) 197, 611, 791
BanII GRGCYC 1 cut(s) 801
BauI CACGAG 1 cut(s) 800
BbrPI CACGTG 1 cut(s) 259
BbsI GAAGAC 3 cut(s) 573, 642, 713
BbvI GCAGC 6 cut(s) 177, 180, 526, 563, 707, 751
BccI CCATC 3 cut(s) 32, 74, 799
BceAI ACGGC 2 cut(s) 178, 625
BciT130I CCWGG 1 cut(s) 534
BcnI CCSGG 1 cut(s) 796
BcoDI GTCTC 1 cut(s) 663
BfrI CTTAAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 754
BisI GCNGC 9 cut(s) 166, 169, 201, 540, 552, 585, 588, 696, 765
BlpI GCTNAGC 2 cut(s) 357, 471
BlsI GCNGC 9 cut(s) 167, 170, 202, 541, 553, 586, 589, 697, 766
Bme1390I CCNGG 2 cut(s) 534, 796
BmeT110I CYCGRG 1 cut(s) 86
BmiI GGNNCC 4 cut(s) 199, 613, 756, 793
BmrFI CCNGG 2 cut(s) 534, 796
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 3 cut(s) 573, 642, 713
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 527
Bpu1102I GCTNAGC 2 cut(s) 357, 471
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 796
BsaAI YACGTR 1 cut(s) 259
BsaJI CCNNGG 5 cut(s) 60, 160, 427, 532, 546
BsaWI WCCGGW 1 cut(s) 665
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 232, 665, 731
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 659
BseAI TCCGGA 1 cut(s) 665
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 5 cut(s) 60, 160, 427, 532, 546
BseGI GGATG 2 cut(s) 15, 72
BseLI CCNNNNNNNGG 4 cut(s) 91, 232, 665, 731
BseMII CTCAG 2 cut(s) 371, 485
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 2 cut(s) 74, 731
BseXI GCAGC 6 cut(s) 177, 180, 526, 563, 707, 751
BsgI GTGCAG 1 cut(s) 525
Bsh1236I CGCG 2 cut(s) 772, 774
BshFI GGCC 3 cut(s) 53, 65, 236
BshNI GGYRCC 3 cut(s) 197, 611, 791
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 5 cut(s) 216, 348, 666, 752, 795
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 4 cut(s) 91, 232, 665, 731
BsmAI GTCTC 1 cut(s) 663
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 3 cut(s) 53, 65, 236
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 801
Bsp13I TCCGGA 1 cut(s) 665
Bsp1720I GCTNAGC 2 cut(s) 357, 471
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 5 cut(s) 201, 207, 585, 588, 615
BspANI GGCC 3 cut(s) 53, 65, 236
BspCNI CTCAG 2 cut(s) 370, 484
BspEI TCCGGA 1 cut(s) 665
BspFNI CGCG 2 cut(s) 772, 774
BspLI GGNNCC 4 cut(s) 199, 613, 756, 793
BspMI ACCTGC 1 cut(s) 754
BspT107I GGYRCC 3 cut(s) 197, 611, 791
BspTI CTTAAG 1 cut(s) 392
BsrBI CCGCTC 2 cut(s) 590, 617
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 5 cut(s) 60, 160, 427, 532, 546
BssSI CACGAG 1 cut(s) 800
BssT1I CCWWGG 2 cut(s) 427, 546
Bst2BI CACGAG 1 cut(s) 800
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 3 cut(s) 178, 197, 325
Bst6I CTCTTC 1 cut(s) 25
BstAFI CTTAAG 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 3 cut(s) 141, 389, 741
BstDEI CTNAG 4 cut(s) 357, 471, 527, 828
BstDSI CCRYGG 2 cut(s) 160, 427
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 2 cut(s) 15, 72
BstFNI CGCG 2 cut(s) 772, 774
BstHHI GCGC 1 cut(s) 774
BstMAI GTCTC 1 cut(s) 663
BstMWI GCNNNNNNNGC 6 cut(s) 197, 206, 548, 560, 692, 761
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 1 cut(s) 743
BstSCI CCNGG 2 cut(s) 532, 794
BstUI CGCG 2 cut(s) 772, 774
BstV1I GCAGC 6 cut(s) 177, 180, 526, 563, 707, 751
BstV2I GAAGAC 3 cut(s) 573, 642, 713
BstXI CCANNNNNNTGG 1 cut(s) 434
BsuRI GGCC 3 cut(s) 53, 65, 236
BtgI CCRYGG 2 cut(s) 160, 427
BtgZI GCGATG 2 cut(s) 591, 636
BtsCI GGATG 2 cut(s) 15, 72
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 465, 666
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 3 cut(s) 141, 389, 741
CfoI GCGC 1 cut(s) 774
Cfr10I RCCGGY 1 cut(s) 347
CseI GACGC 1 cut(s) 763
CviAII CATG 3 cut(s) 428, 731, 740
DdeI CTNAG 4 cut(s) 357, 471, 527, 828
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 427, 546
Eco24I GRGCYC 1 cut(s) 801
Eco57I CTGAAG 3 cut(s) 88, 98, 585
Eco72I CACGTG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 427, 546
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 2 cut(s) 427, 546
FaeI CATG 3 cut(s) 431, 734, 743
FaiI YATR 4 cut(s) 429, 453, 732, 741
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 208
FatI CATG 3 cut(s) 427, 730, 739
Fnu4HI GCNGC 9 cut(s) 166, 169, 201, 540, 552, 585, 588, 696, 765
FokI GGATG 2 cut(s) 22, 59
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 9 cut(s) 166, 169, 201, 540, 552, 585, 588, 696, 765
GlaI GCGC 1 cut(s) 773
GluI GCNGC 9 cut(s) 166, 169, 201, 540, 552, 585, 588, 696, 765
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 3 cut(s) 53, 65, 236
HapII CCGG 5 cut(s) 216, 348, 666, 752, 795
HgaI GACGC 1 cut(s) 763
HhaI GCGC 1 cut(s) 774
Hin1II CATG 3 cut(s) 431, 734, 743
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HinfI GANTC 7 cut(s) 95, 131, 443, 517, 671, 709, 784
HpaII CCGG 5 cut(s) 216, 348, 666, 752, 795
HphI GGTGA 6 cut(s) 166, 388, 588, 615, 666, 746
Hpy188I TCNGA 2 cut(s) 100, 116
Hpy188III TCNNGA 8 cut(s) 76, 88, 331, 521, 666, 713, 778, 802
Hpy99I CGWCG 2 cut(s) 149, 779
HpyAV CCTTC 3 cut(s) 85, 503, 768
HpyCH4III ACNGT 3 cut(s) 178, 197, 325
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 340, 542, 743
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 206, 548, 560, 692, 761
HpyF3I CTNAG 4 cut(s) 357, 471, 527, 828
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 3 cut(s) 431, 734, 743
HspAI GCGC 1 cut(s) 772
Kpn2I TCCGGA 1 cut(s) 665
LmnI GCTCC 6 cut(s) 87, 559, 595, 622, 754, 760
Lsp1109I GCAGC 6 cut(s) 177, 180, 526, 563, 707, 751
LweI GCATC 1 cut(s) 180
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 328, 463
MbiI CCGCTC 2 cut(s) 590, 617
MboII GAAGA 6 cut(s) 12, 22, 316, 578, 647, 718
MhlI GDGCHC 1 cut(s) 801
MlyI GAGTC 4 cut(s) 104, 665, 703, 778
MmeI TCCRAC 1 cut(s) 123
MroI TCCGGA 1 cut(s) 665
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 432
MspA1I CMGCKG 2 cut(s) 422, 563
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 5 cut(s) 216, 348, 666, 752, 795
MspR9I CCNGG 2 cut(s) 534, 796
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 2 cut(s) 772, 774
MwoI GCNNNNNNNGC 6 cut(s) 197, 206, 548, 560, 692, 761
NciI CCSGG 1 cut(s) 796
NcoI CCATGG 1 cut(s) 427
NlaIII CATG 3 cut(s) 431, 734, 743
NlaIV GGNNCC 4 cut(s) 199, 613, 756, 793
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 2 cut(s) 328, 463
NspI RCATGY 1 cut(s) 743
PaeI GCATGC 1 cut(s) 743
PaeR7I CTCGAG 1 cut(s) 86
PaqCI CACCTGC 1 cut(s) 754
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 3 cut(s) 131, 443, 517
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 9 cut(s) 167, 170, 202, 541, 553, 586, 589, 697, 766
PleI GAGTC 4 cut(s) 103, 665, 703, 778
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 4 cut(s) 103, 665, 703, 778
Ppu21I YACGTR 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 532
PspCI CACGTG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 4 cut(s) 199, 613, 756, 793
PvuII CAGCTG 2 cut(s) 422, 563
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 9 cut(s) 166, 169, 201, 540, 552, 585, 588, 696, 765
SchI GAGTC 4 cut(s) 104, 665, 703, 778
ScrFI CCNGG 2 cut(s) 534, 796
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 1 cut(s) 180
Sfr274I CTCGAG 1 cut(s) 86
SgrAI CRCCGGYG 1 cut(s) 347
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 3 cut(s) 86, 125, 392
SmoI CTYRAG 3 cut(s) 86, 125, 392
SphI GCATGC 1 cut(s) 743
SsiI CCGC 5 cut(s) 201, 207, 585, 588, 615
StyD4I CCNGG 2 cut(s) 532, 794
StyI CCWWGG 2 cut(s) 427, 546
TaaI ACNGT 3 cut(s) 178, 197, 325
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 69, 87, 267, 777
TauI GCSGC 3 cut(s) 203, 587, 590
TfiI GAWTC 3 cut(s) 131, 443, 517
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 472, 666
TseFI GTSAC 2 cut(s) 328, 463
TseI GCWGC 6 cut(s) 165, 168, 539, 551, 695, 764
Tsp45I GTSAC 2 cut(s) 328, 463
TspDTI ATGAA 2 cut(s) 594, 648
TspRI CASTG 2 cut(s) 472, 666
Van91I CCANNNNNTGG 1 cut(s) 731
Vha464I CTTAAG 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 89
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.