Rroxscaffold_7G00157000

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001500
Physical Location & Seq
Forward (+)
860986 .. 861840
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157000.1

Sequence Viewer

Length: 855 bp
ATGGAGACGAATAAAGCTAAAGCCTCTGTCTCCTTCTTCCTTCTCATGATGTTGTTAATAAGCTCTTGTTCGGCTTTCAACATCACCAAGCTCCTCGAAAAGGAAGACGATTTCAGCAACTTCAACCAGCAGCTCTCCCAGACCAAAATCGCTGACCAGATCAACAAGCGGAGCACCATCACCGTCCTCGCCGTGGACAACAGCGCAATAGGCGGTCTAGGTGACGACAGCTCCGTGACGAAGGCGATCATGAGCGTCCACGTCATCCTCGACTACTACGACAAGGAGAAGCTGACCAAGTATGCCAAGACCAACAAGAGCGCCATGCTGACTACGCTGTACCAGACCTCCGGGTTGGCTAAGAACCAACAGGGCTTCCTCCGAGTAGCAGCCGACGACGGTGAGATTACTTTCGGGTCGGCAAGCAAGGGTGGACAAATGAACTCCAAGCTGGTCAAGTCTGTGACAGCTCAGCCCTACAACATTTCCGTGCTTCAGGTTAGTTCCATCATAGAGGTTCCCGACATTAATGCTAATCCTTCCCCCGAAAAGGCTCCGGCACCAAAGAGAGGGAAGCCTCCGAGTTCGTCCGACGACGCCGACAGTCCCTCCGACGACGACGCTGACAGTCCCTCCGACGACACAGCCGACAGTCCAGGGGACGACTCGGACTCGGAGGCTCCCAGTCCGTCGAAGCACCATACACCACCCAAGCCTAAGGATGATACGTCAGATTCGCCATCGTCGAGTCCAGCGCCTGCGCCCGGTAAGAGTGATGCACGCGCCACCGCTGCGGAGATGGGCGTTGGGGTTGTTGCTATGGGGTTAGTTTCGGTGTTAGTTGCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

284

Amino Acids

29.88

Weight (kDa)

4.79

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 559
AccII CGCG 1 cut(s) 783
AciI CCGC 4 cut(s) 169, 213, 789, 794
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 764
AgsI TTSAA 2 cut(s) 79, 124
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 8 cut(s) 17, 63, 91, 133, 231, 292, 451, 470
AluI AGCT 8 cut(s) 17, 63, 91, 133, 231, 292, 451, 470
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 758
ApeKI GCWGC 3 cut(s) 130, 389, 791
AseI ATTAAT 1 cut(s) 528
AspLEI GCGC 5 cut(s) 206, 323, 757, 763, 785
AsuC2I CCSGG 2 cut(s) 352, 765
AsuHPI GGTGA 4 cut(s) 76, 172, 233, 413
AxyI CCTNAGG 1 cut(s) 717
BanI GGYRCC 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 142, 401, 778
BccI CCATC 4 cut(s) 185, 515, 748, 793
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 1 cut(s) 657
BcnI CCSGG 2 cut(s) 352, 765
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 2 cut(s) 324, 758
BisI GCNGC 3 cut(s) 131, 390, 792
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 3 cut(s) 132, 391, 793
Bme1390I CCNGG 3 cut(s) 352, 657, 765
BmgBI CACGTC 1 cut(s) 262
BmiI GGNNCC 4 cut(s) 519, 555, 561, 681
BmrFI CCNGG 3 cut(s) 352, 657, 765
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 766
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 471
BpuMI CCSGG 2 cut(s) 352, 765
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 2 cut(s) 192, 656
BsaXI ACNNNNNCTCC 8 cut(s) 215, 245, 332, 362, 593, 617, 623, 647
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 764
Bse1I ACTGG 1 cut(s) 684
Bse21I CCTNAGG 1 cut(s) 717
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 2 cut(s) 192, 656
BseGI GGATG 2 cut(s) 264, 727
BseLI CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 764
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 684
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 142, 401, 778
Bsh1236I CGCG 1 cut(s) 783
BshNI GGYRCC 1 cut(s) 559
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 3 cut(s) 351, 557, 765
BslFI GGGAC 3 cut(s) 591, 615, 674
BslI CCNNNNNNNGG 5 cut(s) 100, 193, 550, 569, 764
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 3 cut(s) 591, 615, 674
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 159, 246
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 4 cut(s) 169, 213, 789, 794
BspCNI CTCAG 1 cut(s) 484
BspFNI CGCG 1 cut(s) 783
BspHI TCATGA 2 cut(s) 45, 249
BspLI GGNNCC 4 cut(s) 519, 555, 561, 681
BspT107I GGYRCC 1 cut(s) 559
BsrI ACTGG 1 cut(s) 684
BssECI CCNNGG 2 cut(s) 192, 656
BssMI GATC 2 cut(s) 159, 246
BssNI GRCGYC 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 5 cut(s) 184, 401, 605, 629, 653
BstACI GRCGYC 1 cut(s) 597
BstC8I GCNNGC 3 cut(s) 424, 759, 781
BstDEI CTNAG 3 cut(s) 360, 471, 717
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 264, 727
BstFNI CGCG 1 cut(s) 783
BstH2I RGCGCY 2 cut(s) 324, 758
BstHHI GCGC 5 cut(s) 206, 323, 757, 763, 785
BstKTI GATC 2 cut(s) 162, 249
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 159, 246
BstMWI GCNNNNNNNGC 3 cut(s) 210, 334, 791
BstNI CCWGG 1 cut(s) 657
BstSCI CCNGG 3 cut(s) 350, 655, 763
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 3 cut(s) 142, 401, 778
BstV2I GAAGAC 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 717
BtgI CCRYGG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 264, 727
Cac8I GCNNGC 3 cut(s) 424, 759, 781
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 2 cut(s) 45, 249
CfoI GCGC 5 cut(s) 206, 323, 757, 763, 785
CseI GACGC 3 cut(s) 244, 605, 629
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 46, 250, 325
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 3 cut(s) 360, 471, 717
DpnI GATC 2 cut(s) 161, 248
DpnII GATC 2 cut(s) 159, 246
Eco57I CTGAAG 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 717
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 655
FaeI CATG 3 cut(s) 49, 253, 328
FaiI YATR 7 cut(s) 47, 251, 303, 326, 512, 702, 821
FaqI GGGAC 3 cut(s) 591, 615, 674
FatI CATG 3 cut(s) 45, 249, 324
Fnu4HI GCNGC 3 cut(s) 131, 390, 792
FokI GGATG 2 cut(s) 251, 734
Fsp4HI GCNGC 3 cut(s) 131, 390, 792
FspBI CTAG 1 cut(s) 218
GlaI GCGC 5 cut(s) 205, 322, 756, 762, 784
GluI GCNGC 3 cut(s) 131, 390, 792
HaeII RGCGCY 2 cut(s) 324, 758
HapII CCGG 3 cut(s) 351, 557, 765
HgaI GACGC 3 cut(s) 244, 605, 629
HhaI GCGC 5 cut(s) 206, 323, 757, 763, 785
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 3 cut(s) 49, 253, 328
Hin6I GCGC 5 cut(s) 204, 321, 755, 761, 783
HinP1I GCGC 5 cut(s) 204, 321, 755, 761, 783
HinfI GANTC 4 cut(s) 665, 671, 734, 748
HpaII CCGG 3 cut(s) 351, 557, 765
HphI GGTGA 4 cut(s) 76, 172, 233, 413
Hpy166II GTNNAC 3 cut(s) 196, 259, 434
Hpy188I TCNGA 8 cut(s) 383, 582, 592, 613, 637, 670, 676, 733
Hpy188III TCNNGA 3 cut(s) 46, 250, 521
Hpy8I GTNNAC 3 cut(s) 196, 259, 434
HpyAV CCTTC 4 cut(s) 43, 50, 235, 549
HpyCH4III ACNGT 5 cut(s) 184, 401, 605, 629, 653
HpyCH4IV ACGT 2 cut(s) 261, 728
HpyCH4V TGCA 1 cut(s) 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 334, 791
HpyF3I CTNAG 3 cut(s) 360, 471, 717
HpySE526I ACGT 2 cut(s) 261, 728
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 3 cut(s) 49, 253, 328
HspAI GCGC 5 cut(s) 204, 321, 755, 761, 783
Kzo9I GATC 2 cut(s) 159, 246
LmnI GCTCC 5 cut(s) 96, 171, 236, 559, 685
Lsp1109I GCAGC 3 cut(s) 142, 401, 778
LweI GCATC 1 cut(s) 766
MaeI CTAG 1 cut(s) 218
MaeII ACGT 2 cut(s) 261, 728
MaeIII GTNAC 3 cut(s) 221, 235, 463
MalI GATC 2 cut(s) 161, 248
MboI GATC 2 cut(s) 159, 246
MboII GAAGA 2 cut(s) 28, 116
MhlI GDGCHC 1 cut(s) 176
MlyI GAGTC 3 cut(s) 659, 665, 757
MmeI TCCRAC 3 cut(s) 615, 636, 660
MseI TTAA 2 cut(s) 56, 528
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 3 cut(s) 351, 557, 765
MspR9I CCNGG 3 cut(s) 352, 657, 765
MvaI CCWGG 1 cut(s) 657
MvnI CGCG 1 cut(s) 783
MwoI GCNNNNNNNGC 3 cut(s) 210, 334, 791
NciI CCSGG 2 cut(s) 352, 765
NdeII GATC 2 cut(s) 159, 246
NlaIII CATG 3 cut(s) 49, 253, 328
NlaIV GGNNCC 4 cut(s) 519, 555, 561, 681
NmuCI GTSAC 3 cut(s) 221, 235, 463
PagI TCATGA 2 cut(s) 45, 249
PcsI WCGNNNNNNNCGW 5 cut(s) 231, 267, 276, 645, 743
PfeI GAWTC 1 cut(s) 734
PkrI GCNGC 3 cut(s) 132, 391, 793
PleI GAGTC 3 cut(s) 659, 665, 756
PpsI GAGTC 3 cut(s) 659, 665, 756
PshBI ATTAAT 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 4 cut(s) 519, 555, 561, 681
PstNI CAGNNNCTG 1 cut(s) 758
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 56, 528
SatI GCNGC 3 cut(s) 131, 390, 792
Sau3AI GATC 2 cut(s) 159, 246
SchI GAGTC 3 cut(s) 659, 665, 757
ScrFI CCNGG 3 cut(s) 352, 657, 765
SduI GDGCHC 1 cut(s) 176
SfaNI GCATC 1 cut(s) 766
SmiMI CAYNNNNRTG 1 cut(s) 488
SsiI CCGC 4 cut(s) 169, 213, 789, 794
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 3 cut(s) 350, 655, 763
TaaI ACNGT 5 cut(s) 184, 401, 605, 629, 653
TaiI ACGT 2 cut(s) 264, 731
TaqI TCGA 4 cut(s) 96, 270, 692, 746
TfiI GAWTC 1 cut(s) 734
Tru1I TTAA 2 cut(s) 56, 528
Tru9I TTAA 2 cut(s) 56, 528
TseFI GTSAC 3 cut(s) 221, 235, 463
TseI GCWGC 3 cut(s) 130, 389, 791
Tsp45I GTSAC 3 cut(s) 221, 235, 463
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 3 cut(s) 223, 478, 678
VspI ATTAAT 1 cut(s) 528
XagI CCTNNNNNAGG 1 cut(s) 98
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.