Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004065.1

Orthogroup ID

OG0001500

Physical Location & Seq

Genomic Coordinates Forward (+)

15906 .. 16742

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004065.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgttcttcttcgttctctccatgttgtccataagctcttgttcggctttcaacatcacgaagctgcttaacaaagaatccgatttcagcacctttaacaaatacctctccgagaccaaactcgccgaccagatcaacaagcgaagcaccatcaccgtcctcgccgtggccaacgacgcaatgggcggcctctctagcgacgacagcttcaccctcaagtcggtcgtgagcgtccacgtcatcctcgactactacgacaaggagaagttggctaagctggccaagaacaatagaagcgccatgctgacgtctctattccagagttcgggcgtggctcaaaaccaacagggcttcgttctggtcgaagtcgttgacggtgagatttttttcgggtcagcatccaagggtgcacaaatgaactccaagattgttaagtcggtgacagctcagccctacaacatttccgtgcttgaggtcagctccatcattggggttcccaacatcaatgcttctccggcgcccgagaaagctccggcaccgaagaaaggcaagtctgccagtccggaagacgaggcagagagcccttccgaagacaccgctgaaagtcctgccgatgacacgtcggactcggactcggagcctccgagtccgtccaaagccagagattcgactccacccaagccaggttatgaggatgatctggtgacggtagattcgccatcttcgactccggcacctgcgccctccaagaatgatgcacgcgccaccgctgctgagatgggagttggggttgttgcgatggggttggttatttcagtattggttgctttgttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

278

Amino Acids

29.27

Weight (kDa)

4.69

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12660
fragaria_vesca	FvH4_2g30720 FvH4_2g30730 FvH4_2g30760 FvH4_6g28020
malus_domestica	MD08G1131800.v1.1 MD08G1134300.v1.1 MD15G1109400.v1.1 MD15G1109500.v1.1
prunus_persica	Prupe.1G461700_v2.0.a1 Prupe.1G461800_v2.0.a1
pyrus_communis	pycom08g11330 pycom15g09970
rosa_chinensis	RchiOBHm_Chr2g0131711 RchiOBHm_Chr6g0312141 RchiOBHm_Chr6g0312161
rosa_laevigata	RLG00000010348 RLG00000010349 RLG00000010351 RLG00000019203
rosa_multiflora	Rmu_sc0002589.1_g000028 Rmu_sc0004065.1_g000005 Rmu_sc0009794.1_g000007 Rmu_sc0009880.1_g000016 Rmu_sc0036403.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112680 Rroxscaffold_7G00156990 Rroxscaffold_7G00157000
rosa_rugosa	Rorug02G0299200 Rorug06G0393000 Rorug06G0393100 Rorug06G0393300
rosa_samantha	Rh2AG351800 Rh2BG358800 Rh2CG337300 Rh6AG510000 Rh6AG510300 Rh6AG510400 Rh6BG520900 Rh6BG521200 Rh6BG521300 Rh6CG526900 Rh6CG527100 Rh6CG527200 Rh6DG512200 Rh6DG512500 Rh6DG512600
rosa_wichuraiana	Rw2G028570 Rw6G044370 Rw6G044390 Rw6G044400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
AatII	GACGTC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	745
AccB1I	GGYRCC	3 cut(s)	517, 535, 733
AccII	CGCG	1 cut(s)	762
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	3 cut(s)	186, 597, 768
AcoI	YGGCCR	2 cut(s)	168, 279
AcyI	GRCGYC	2 cut(s)	308, 518
AfiI	CCNNNNNNNGG	6 cut(s)	166, 220, 325, 489, 545, 683
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	1 cut(s)	52
AjiI	CACGTC	2 cut(s)	238, 621
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	7 cut(s)	36, 64, 207, 277, 446, 480, 530
AluI	AGCT	7 cut(s)	36, 64, 207, 277, 446, 480, 530
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	2 cut(s)	107, 315
Alw44I	GTGCAC	1 cut(s)	408
Ama87I	CYCGRG	1 cut(s)	521
Aor13HI	TCCGGA	1 cut(s)	562
AoxI	GGCC	3 cut(s)	168, 187, 279
ApaLI	GTGCAC	1 cut(s)	408
ApeKI	GCWGC	2 cut(s)	64, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	697, 729
AspLEI	GCGC	4 cut(s)	299, 520, 742, 764
AsuHPI	GGTGA	5 cut(s)	145, 202, 389, 451, 715
AvaI	CYCGRG	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	412
BalI	TGGCCA	2 cut(s)	170, 281
BanI	GGYRCC	3 cut(s)	517, 535, 733
BanII	GRGCYC	1 cut(s)	584
BbsI	GAAGAC	2 cut(s)	573, 597
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	51, 757
BccI	CCATC	5 cut(s)	158, 491, 727, 772, 793
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	684
BcoDI	GTCTC	2 cut(s)	107, 315
BfaI	CTAG	1 cut(s)	195
BfoI	RGCGCY	2 cut(s)	300, 521
BfuAI	ACCTGC	1 cut(s)	745
BisI	GCNGC	3 cut(s)	65, 187, 771
BlpI	GCTNAGC	2 cut(s)	273, 447
BlsI	GCNGC	3 cut(s)	66, 188, 772
Bme1390I	CCNGG	1 cut(s)	684
BmeT110I	CYCGRG	1 cut(s)	521
BmgBI	CACGTC	2 cut(s)	238, 621
BmiI	GGNNCC	5 cut(s)	495, 519, 537, 639, 735
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	407, 745
BpiI	GAAGAC	2 cut(s)	573, 597
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
Bpu1102I	GCTNAGC	2 cut(s)	273, 447
BpuEI	CTTGAG	2 cut(s)	200, 491
BsaHI	GRCGYC	2 cut(s)	308, 518
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	165, 402
BsaWI	WCCGGW	1 cut(s)	562
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	6 cut(s)	166, 220, 325, 489, 545, 683
Bse1I	ACTGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	165, 402
BseGI	GGATG	3 cut(s)	240, 398, 700
BseLI	CCNNNNNNNGG	6 cut(s)	166, 220, 325, 489, 545, 683
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	461, 765
BseNI	ACTGG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	51, 757
Bsh1236I	CGCG	1 cut(s)	762
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	170, 189, 281
BshNI	GGYRCC	3 cut(s)	517, 535, 733
BsiEI	CGRYCG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	4 cut(s)	515, 533, 563, 731
BslI	CCNNNNNNNGG	6 cut(s)	166, 220, 325, 489, 545, 683
BsmAI	GTCTC	2 cut(s)	107, 315
BsmBI	CGTCTC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	170, 189, 281
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	412, 584
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	2 cut(s)	132, 697
Bsp1720I	GCTNAGC	2 cut(s)	273, 447
BspACI	CCGC	3 cut(s)	186, 597, 768
BspANI	GGCC	3 cut(s)	170, 189, 281
BspCNI	CTCAG	2 cut(s)	460, 766
BspEI	TCCGGA	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	762
BspLI	GGNNCC	5 cut(s)	495, 519, 537, 639, 735
BspMI	ACCTGC	1 cut(s)	745
BspT107I	GGYRCC	3 cut(s)	517, 535, 733
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	558
BssECI	CCNNGG	2 cut(s)	165, 402
BssMI	GATC	2 cut(s)	132, 697
BssNI	GRCGYC	2 cut(s)	308, 518
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	3 cut(s)	157, 377, 709
BstACI	GRCGYC	2 cut(s)	308, 518
BstC8I	GCNNGC	2 cut(s)	279, 760
BstDEI	CTNAG	3 cut(s)	273, 447, 774
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	240, 398, 700
BstFNI	CGCG	1 cut(s)	762
BstH2I	RGCGCY	2 cut(s)	300, 521
BstHHI	GCGC	4 cut(s)	299, 520, 742, 764
BstKTI	GATC	2 cut(s)	135, 700
BstMAI	GTCTC	2 cut(s)	107, 315
BstMBI	GATC	2 cut(s)	132, 697
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 195, 204, 278, 515, 770
BstNI	CCWGG	1 cut(s)	684
BstSCI	CCNGG	1 cut(s)	682
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	1 cut(s)	762
BstV1I	GCAGC	2 cut(s)	51, 757
BstV2I	GAAGAC	2 cut(s)	573, 597
BsuRI	GGCC	3 cut(s)	170, 189, 281
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	812
BtrI	CACGTC	2 cut(s)	238, 621
BtsCI	GGATG	3 cut(s)	240, 398, 700
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	2 cut(s)	279, 760
CfoI	GCGC	4 cut(s)	299, 520, 742, 764
CseI	GACGC	2 cut(s)	185, 220
CviAII	CATG	2 cut(s)	22, 301
DdeI	CTNAG	3 cut(s)	273, 447, 774
DinI	GGCGCC	1 cut(s)	519
DpnI	GATC	2 cut(s)	134, 699
DpnII	GATC	2 cut(s)	132, 697
EaeI	YGGCCR	2 cut(s)	168, 279
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	584
Eco31I	GGTCTC	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	584
EgeI	GGCGCC	1 cut(s)	519
EheI	GGCGCC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	2 cut(s)	25, 304
FaiI	YATR	4 cut(s)	23, 32, 302, 690
FatI	CATG	2 cut(s)	21, 300
Fnu4HI	GCNGC	3 cut(s)	65, 187, 771
FokI	GGATG	3 cut(s)	227, 385, 707
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	3 cut(s)	65, 187, 771
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	4 cut(s)	298, 519, 741, 763
GluI	GCNGC	3 cut(s)	65, 187, 771
HaeII	RGCGCY	2 cut(s)	300, 521
HaeIII	GGCC	3 cut(s)	170, 189, 281
HapII	CCGG	4 cut(s)	515, 533, 563, 731
HgaI	GACGC	2 cut(s)	185, 220
HhaI	GCGC	4 cut(s)	299, 520, 742, 764
Hin1I	GRCGYC	2 cut(s)	308, 518
Hin1II	CATG	2 cut(s)	25, 304
Hin6I	GCGC	4 cut(s)	297, 518, 740, 762
HinP1I	GCGC	4 cut(s)	297, 518, 740, 762
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	8 cut(s)	77, 626, 632, 646, 665, 670, 713, 727
HpaII	CCGG	4 cut(s)	515, 533, 563, 731
HphI	GGTGA	5 cut(s)	145, 202, 389, 451, 715
Hpy166II	GTNNAC	3 cut(s)	235, 373, 410
Hpy188I	TCNGA	8 cut(s)	82, 112, 589, 625, 631, 637, 645, 836
Hpy188III	TCNNGA	4 cut(s)	58, 226, 319, 563
Hpy8I	GTNNAC	3 cut(s)	235, 373, 410
Hpy99I	CGWCG	3 cut(s)	179, 203, 625
HpyAV	CCTTC	1 cut(s)	594
HpyCH4III	ACNGT	3 cut(s)	157, 377, 709
HpyCH4IV	ACGT	3 cut(s)	237, 308, 620
HpyCH4V	TGCA	2 cut(s)	410, 758
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 195, 204, 278, 515, 770
HpyF3I	CTNAG	3 cut(s)	273, 447, 774
HpySE526I	ACGT	3 cut(s)	237, 308, 620
Hsp92I	GRCGYC	2 cut(s)	308, 518
Hsp92II	CATG	2 cut(s)	25, 304
HspAI	GCGC	4 cut(s)	297, 518, 740, 762
KasI	GGCGCC	1 cut(s)	517
Kpn2I	TCCGGA	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	132, 697
LmnI	GCTCC	3 cut(s)	485, 535, 637
Lsp1109I	GCAGC	2 cut(s)	51, 757
LweI	GCATC	2 cut(s)	407, 745
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	3 cut(s)	237, 308, 620
MaeIII	GTNAC	2 cut(s)	439, 703
MalI	GATC	2 cut(s)	134, 699
MboI	GATC	2 cut(s)	132, 697
MboII	GAAGA	4 cut(s)	553, 578, 602, 714
MhlI	GDGCHC	2 cut(s)	412, 584
MlsI	TGGCCA	2 cut(s)	170, 281
MluNI	TGGCCA	2 cut(s)	170, 281
Mly113I	GGCGCC	1 cut(s)	518
MlyI	GAGTC	5 cut(s)	620, 626, 655, 664, 721
MmeI	TCCRAC	1 cut(s)	603
Mox20I	TGGCCA	2 cut(s)	170, 281
MroI	TCCGGA	1 cut(s)	562
MscI	TGGCCA	2 cut(s)	170, 281
MseI	TTAA	3 cut(s)	69, 96, 432
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	2 cut(s)	170, 281
MspA1I	CMGCKG	2 cut(s)	599, 770
MspI	CCGG	4 cut(s)	515, 533, 563, 731
MspR9I	CCNGG	1 cut(s)	684
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	762
MwoI	GCNNNNNNNGC	6 cut(s)	176, 195, 204, 278, 515, 770
NarI	GGCGCC	1 cut(s)	518
NdeII	GATC	2 cut(s)	132, 697
NlaIII	CATG	2 cut(s)	25, 304
NlaIV	GGNNCC	5 cut(s)	495, 519, 537, 639, 735
NmuCI	GTSAC	2 cut(s)	439, 703
PaqCI	CACCTGC	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	5 cut(s)	243, 252, 360, 641, 722
PfeI	GAWTC	3 cut(s)	77, 665, 713
PkrI	GCNGC	3 cut(s)	66, 188, 772
PleI	GAGTC	5 cut(s)	620, 626, 654, 664, 721
PluTI	GGCGCC	1 cut(s)	521
PpsI	GAGTC	5 cut(s)	620, 626, 654, 664, 721
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	5 cut(s)	495, 519, 537, 639, 735
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	3 cut(s)	69, 96, 432
SatI	GCNGC	3 cut(s)	65, 187, 771
Sau3AI	GATC	2 cut(s)	132, 697
SchI	GAGTC	5 cut(s)	620, 626, 655, 664, 721
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	2 cut(s)	412, 584
SfaNI	GCATC	2 cut(s)	407, 745
SfoI	GGCGCC	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	215, 470
SmoI	CTYRAG	2 cut(s)	215, 470
SsiI	CCGC	3 cut(s)	186, 597, 768
SspDI	GGCGCC	1 cut(s)	517
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	3 cut(s)	157, 377, 709
TaiI	ACGT	3 cut(s)	240, 311, 623
TaqI	TCGA	4 cut(s)	246, 363, 668, 725
TaqII	GACCGA	1 cut(s)	211
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	3 cut(s)	77, 665, 713
Tru1I	TTAA	3 cut(s)	69, 96, 432
Tru9I	TTAA	3 cut(s)	69, 96, 432
TseFI	GTSAC	2 cut(s)	439, 703
TseI	GCWGC	2 cut(s)	64, 770
Tsp45I	GTSAC	2 cut(s)	439, 703
TspDTI	ATGAA	1 cut(s)	431
TspGWI	ACGGA	2 cut(s)	454, 639
VneI	GTGCAC	1 cut(s)	408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XspI	CTAG	1 cut(s)	195
ZraI	GACGTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.