Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001500

Physical Location & Seq

Genomic Coordinates Reverse (-)

7653964 .. 7654752

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1109500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGAACACAAAGGACTCCGTCATCCTCTGCCTTGCCTTCTTCCTTGTCTTCTCTTCGGCTTCGGCCTTTGACATCGTCAAGCTTCTCGAGAAGCAGTCGGATTTCAGCAGCTTCACCAACTACCTCAAGGAGACCAAGCTCGGAGATGAGATCAACAAGCGCAGCACCATCACTGTGTTGGCAGTGGACAATGGGGGCATCTCAAGCATCTCCGGAAAATCCCAAGATGTGATCAAGAAGATCCTGAGCGCACACGTGGTTTTGGATTACTATGACCAGAAGAAACTGACCAATTTAGTTACTTCCAGCAAGGTGTCAACCCTAACCACAATGCTCCAGTCCACTGGCCAGGCCAAGGACCAGCAAGGGTTCATCAACCTCGGTAAGATAGACGAGGGAGGGCTCGCTTTCGGGTCAGCTGTCAAGGGCAGCAAGCTCAACGCCAAGTTCGTGAAATCCGTTGTCTCTCAGCCCTTCAACATTTCAGTTCTTCAAATCTCAAATGTGATTGAAATTCCTGACATTTCTGCTGCCTCGAGCCCTGCCAGCTCACCAAAATCCTCTGCCTCACCAGCTCCTTCTCCATTAAAGAAATCATCCTCTGATGCTCCCAGTCCTTCCTCTGAGGTTTCATCCCCACCTGTTTCTGGTGATGCTTCATCTGCATCCTCACCATCTGCTGATGCACCAGCCGGATCATCAAGCTCTACCACTGGTTCACACCGTGAGATGGCTGTTGGCGCTGGAGTGGTGATCATGAGCTTGGCTTCCCTTTTGTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

263

Amino Acids

27.05

Weight (kDa)

7.75

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	35 - 112	9.9e-06	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12660
fragaria_vesca	FvH4_2g30720 FvH4_2g30730 FvH4_2g30760 FvH4_6g28020
malus_domestica	MD08G1131800.v1.1 MD08G1134300.v1.1 MD15G1109400.v1.1 MD15G1109500.v1.1
prunus_persica	Prupe.1G461700_v2.0.a1 Prupe.1G461800_v2.0.a1
pyrus_communis	pycom08g11330 pycom15g09970
rosa_chinensis	RchiOBHm_Chr2g0131711 RchiOBHm_Chr6g0312141 RchiOBHm_Chr6g0312161
rosa_laevigata	RLG00000010348 RLG00000010349 RLG00000010351 RLG00000019203
rosa_multiflora	Rmu_sc0002589.1_g000028 Rmu_sc0004065.1_g000005 Rmu_sc0009794.1_g000007 Rmu_sc0009880.1_g000016 Rmu_sc0036403.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112680 Rroxscaffold_7G00156990 Rroxscaffold_7G00157000
rosa_rugosa	Rorug02G0299200 Rorug06G0393000 Rorug06G0393100 Rorug06G0393300
rosa_samantha	Rh2AG351800 Rh2BG358800 Rh2CG337300 Rh6AG510000 Rh6AG510300 Rh6AG510400 Rh6BG520900 Rh6BG521200 Rh6BG521300 Rh6CG526900 Rh6CG527100 Rh6CG527200 Rh6DG512200 Rh6DG512500 Rh6DG512600
rosa_wichuraiana	Rw2G028570 Rw6G044370 Rw6G044390 Rw6G044400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	215
AclWI	GGATC	2 cut(s)	238, 706
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	516
AcvI	CACGTG	1 cut(s)	259
AdeI	CACNNNGTG	1 cut(s)	728
AfiI	CCNNNNNNNGG	3 cut(s)	358, 650, 733
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	481, 497, 515
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	9 cut(s)	85, 114, 142, 422, 439, 552, 578, 708, 765
AluI	AGCT	9 cut(s)	85, 114, 142, 422, 439, 552, 578, 708, 765
Alw26I	GTCTC	2 cut(s)	128, 472
AlwI	GGATC	2 cut(s)	238, 706
Ama87I	CYCGRG	2 cut(s)	89, 538
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	3 cut(s)	66, 349, 354
ApeKI	GCWGC	4 cut(s)	111, 165, 432, 533
ApoI	RAATTY	1 cut(s)	516
AspLEI	GCGC	3 cut(s)	165, 254, 746
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	6 cut(s)	109, 546, 564, 665, 666, 766
AvaI	CYCGRG	2 cut(s)	89, 538
AvaII	GGWCC	1 cut(s)	361
BalI	TGGCCA	1 cut(s)	351
BanII	GRGCYC	2 cut(s)	408, 545
BbrPI	CACGTG	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	4 cut(s)	123, 177, 444, 520
BccI	CCATC	3 cut(s)	179, 685, 727
BciT130I	CCWGG	1 cut(s)	353
BclI	TGATCA	2 cut(s)	234, 756
BcoDI	GTCTC	2 cut(s)	128, 472
BfoI	RGCGCY	1 cut(s)	747
BisI	GCNGC	4 cut(s)	112, 166, 433, 534
BlsI	GCNGC	4 cut(s)	113, 167, 434, 535
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	2 cut(s)	89, 538
BmgT120I	GGNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	6 cut(s)	210, 219, 598, 646, 676, 677
BmuI	ACTGGG	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	2 cut(s)	323, 768
Bpu10I	CCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	113, 190
BsaAI	YACGTR	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	357, 382
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 650, 733
Bse1I	ACTGG	4 cut(s)	340, 352, 615, 721
BseAI	TCCGGA	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	357, 382
BseGI	GGATG	4 cut(s)	24, 599, 635, 668
BseLI	CCNNNNNNNGG	3 cut(s)	358, 650, 733
BseMII	CTCAG	3 cut(s)	239, 485, 618
BseNI	ACTGG	4 cut(s)	340, 352, 615, 721
BseXI	GCAGC	4 cut(s)	123, 177, 444, 520
BshFI	GGCC	3 cut(s)	68, 351, 356
BsiHKCI	CYCGRG	2 cut(s)	89, 538
BsiSI	CCGG	2 cut(s)	216, 696
BslI	CCNNNNNNNGG	3 cut(s)	358, 650, 733
BsmAI	GTCTC	2 cut(s)	128, 472
BsnI	GGCC	3 cut(s)	68, 351, 356
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	2 cut(s)	89, 538
Bsp1286I	GDGCHC	2 cut(s)	408, 545
Bsp13I	TCCGGA	1 cut(s)	215
Bsp143I	GATC	5 cut(s)	153, 234, 243, 698, 756
BspANI	GGCC	3 cut(s)	68, 351, 356
BspCNI	CTCAG	3 cut(s)	240, 484, 619
BspEI	TCCGGA	1 cut(s)	215
BspHI	TCATGA	1 cut(s)	759
BspPI	GGATC	2 cut(s)	238, 706
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	4 cut(s)	340, 352, 615, 721
BssECI	CCNNGG	2 cut(s)	357, 382
BssMI	GATC	5 cut(s)	153, 234, 243, 698, 756
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	178, 728
Bst6I	CTCTTC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	408, 437, 550
BstDEI	CTNAG	3 cut(s)	248, 471, 627
BstF5I	GGATG	4 cut(s)	24, 599, 635, 668
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	3 cut(s)	165, 254, 746
BstKTI	GATC	5 cut(s)	156, 237, 246, 701, 759
BstMAI	GTCTC	2 cut(s)	128, 472
BstMBI	GATC	5 cut(s)	153, 234, 243, 698, 756
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 549, 575, 665, 743
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	4 cut(s)	123, 177, 444, 520
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	68, 351, 356
BtsCI	GGATG	4 cut(s)	24, 599, 635, 668
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	4 cut(s)	174, 192, 345, 714
Cac8I	GCNNGC	3 cut(s)	408, 437, 550
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	3 cut(s)	165, 254, 746
Cfr13I	GGNCC	1 cut(s)	361
CviAII	CATG	1 cut(s)	760
DdeI	CTNAG	3 cut(s)	248, 471, 627
DpnI	GATC	5 cut(s)	155, 236, 245, 700, 758
DpnII	GATC	5 cut(s)	153, 234, 243, 698, 756
DraIII	CACNNNGTG	1 cut(s)	728
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	408, 545
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	361
Eco72I	CACGTG	1 cut(s)	259
Eco88I	CYCGRG	2 cut(s)	89, 538
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	408, 545
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	763
FaiI	YATR	2 cut(s)	276, 761
FatI	CATG	1 cut(s)	759
FbaI	TGATCA	2 cut(s)	234, 756
Fnu4HI	GCNGC	4 cut(s)	112, 166, 433, 534
FokI	GGATG	4 cut(s)	11, 586, 622, 655
FriOI	GRGCYC	2 cut(s)	408, 545
Fsp4HI	GCNGC	4 cut(s)	112, 166, 433, 534
GlaI	GCGC	3 cut(s)	164, 253, 745
GluI	GCNGC	4 cut(s)	112, 166, 433, 534
GsuI	CTGGAG	2 cut(s)	323, 768
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	3 cut(s)	68, 351, 356
HapII	CCGG	2 cut(s)	216, 696
HhaI	GCGC	3 cut(s)	165, 254, 746
Hin1II	CATG	1 cut(s)	763
Hin6I	GCGC	3 cut(s)	163, 252, 744
HinP1I	GCGC	3 cut(s)	163, 252, 744
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	2 cut(s)	216, 696
HphI	GGTGA	6 cut(s)	109, 546, 564, 665, 666, 766
Hpy166II	GTNNAC	4 cut(s)	190, 321, 345, 722
Hpy188I	TCNGA	4 cut(s)	103, 146, 607, 628
Hpy188III	TCNNGA	8 cut(s)	89, 91, 216, 238, 247, 454, 521, 760
Hpy8I	GTNNAC	4 cut(s)	190, 321, 345, 722
HpyAV	CCTTC	4 cut(s)	49, 487, 591, 630
HpyCH4III	ACNGT	2 cut(s)	178, 728
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	668, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 549, 575, 665, 743
HpyF3I	CTNAG	3 cut(s)	248, 471, 627
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	763
HspAI	GCGC	3 cut(s)	163, 252, 744
Kpn2I	TCCGGA	1 cut(s)	215
Ksp22I	TGATCA	2 cut(s)	234, 756
Kzo9I	GATC	5 cut(s)	153, 234, 243, 698, 756
LmnI	GCTCC	3 cut(s)	342, 583, 616
Lsp1109I	GCAGC	4 cut(s)	123, 177, 444, 520
LweI	GCATC	6 cut(s)	210, 219, 598, 646, 676, 677
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	5 cut(s)	155, 236, 245, 700, 758
MboI	GATC	5 cut(s)	153, 234, 243, 698, 756
MboII	GAAGA	6 cut(s)	34, 43, 48, 253, 295, 485
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	408, 545
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	2 cut(s)	295, 516
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	81
Mox20I	TGGCCA	1 cut(s)	351
MroI	TCCGGA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	2 cut(s)	590, 787
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	216, 696
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	5 cut(s)	207, 549, 575, 665, 743
NdeII	GATC	5 cut(s)	153, 234, 243, 698, 756
NlaIII	CATG	1 cut(s)	763
PaeR7I	CTCGAG	2 cut(s)	89, 538
PagI	TCATGA	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	2 cut(s)	450, 459
PflFI	GACNNNGTC	2 cut(s)	20, 77
PkrI	GCNGC	4 cut(s)	113, 167, 434, 535
PleI	GAGTC	1 cut(s)	11
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	351
PspCI	CACGTG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	361
PspXI	VCTCGAGB	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	243
PsyI	GACNNNGTC	2 cut(s)	20, 77
PvuII	CAGCTG	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	590, 787
SatI	GCNGC	4 cut(s)	112, 166, 433, 534
Sau3AI	GATC	5 cut(s)	153, 234, 243, 698, 756
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	2 cut(s)	408, 545
SfaNI	GCATC	6 cut(s)	210, 219, 598, 646, 676, 677
Sfr274I	CTCGAG	2 cut(s)	89, 538
SinI	GGWCC	1 cut(s)	361
SlaI	CTCGAG	2 cut(s)	89, 538
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	4 cut(s)	89, 128, 205, 538
SmoI	CTYRAG	4 cut(s)	89, 128, 205, 538
Sse9I	AATT	2 cut(s)	295, 516
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	178, 728
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	90, 539
TasI	AATT	2 cut(s)	295, 516
Tru1I	TTAA	2 cut(s)	590, 787
Tru9I	TTAA	2 cut(s)	590, 787
TscAI	CASTG	4 cut(s)	181, 192, 352, 721
TseI	GCWGC	4 cut(s)	111, 165, 432, 533
TspDTI	ATGAA	3 cut(s)	364, 624, 651
TspGWI	ACGGA	2 cut(s)	10, 451
TspRI	CASTG	4 cut(s)	181, 192, 352, 721
Tth111I	GACNNNGTC	2 cut(s)	20, 77
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XhoI	CTCGAG	2 cut(s)	89, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.