FvH4_2g30730

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001500
Physical Location & Seq
Forward (+)
23736268 .. 23737588
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30730.t1

Sequence Viewer

Length: 870 bp
ATGGAGACGAATAAACCTAAAGCCTCTGTCTCCTTCTTCCTTGTGATGATGTTGTTGTCAATAAGCTCTTGTTCGGCCTTCAACATCACCAAACTGCTCGAAAAGGAAGATGATTTCAGCACCTTCAACCAACACCTATCCGACACCAAACTCGCCGACCAGATCAACAAGCGCAGCACCATCACCGTCCTCGCCGTCGACAACAGTGCCATAGGCGGCCTAGGTGACGACAGCGTCGTCAAGGCCATCATGAGCGTCCACGTTATCCTCGACTACTACGACAAGGAGAAGCTAACCAAGCTGGCCAAAAACAACAAGAGCGCAACCCTAACGACGCTGTACCAGACCTCAGGCTTGGCTAAGAACGAGCAAGGCTTCGTCCGGATCGCTACCGACGACGACGGCATTACTTTCGGGTCCGCAAGCAAGGGTTCTCAAATGAACTCCAAGCTGGTGAAATCGGTGACATCTCAGCCCTACAACATTTCCGTGCTTCAGGTCAGTTCCATCATAGAGGTTCCCAACATTAATGCTGATCCTTCCCCCGAGAAGGCTCCGGCACCAAAGAGCCGGAAGGCTAAGCCTCCCAGTCCGGCATCCTCCGACGACTCTGCCGACAGTCCTTCCGACGACACTGCCGATAGTCCCACGGACGACCCGGACATGGATGATAATGCTCCGAGTCCGGCCAAGCATCATACACCACCCAAACCTAAGGATGTTGATTCGGATTCGCCATCGTCGAGTCCTGCGCCCGGGCCTGCGGCCGGGGACGGGGCTGGTAAGAGTGATGCACGCGCCAACGCTGCGGAGATGGGTGTTGGGGTTGTTGCGCTAGGGTTGGTTTCGGTCTTAGTTGCCTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

290

Amino Acids

30.27

Weight (kDa)

4.94

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 233, 236
AccB1I GGYRCC 1 cut(s) 559
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 798
AccIII TCCGGA 1 cut(s) 381
AciI CCGC 4 cut(s) 216, 420, 764, 809
AclWI GGATC 2 cut(s) 392, 530
AcoI YGGCCR 3 cut(s) 303, 687, 765
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 5 cut(s) 550, 664, 755, 767, 774
AgsI TTSAA 2 cut(s) 82, 127
AluBI AGCT 4 cut(s) 66, 292, 301, 451
AluI AGCT 4 cut(s) 66, 292, 301, 451
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 2 cut(s) 392, 530
Ama87I CYCGRG 2 cut(s) 545, 755
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 7 cut(s) 75, 217, 243, 303, 687, 758, 765
ApeKI GCWGC 2 cut(s) 174, 806
AseI ATTAAT 1 cut(s) 528
AspA2I CCTAGG 1 cut(s) 220
AspLEI GCGC 5 cut(s) 174, 323, 754, 800, 835
AspS9I GGNCC 2 cut(s) 417, 758
AsuC2I CCSGG 4 cut(s) 659, 756, 757, 769
AsuHPI GGTGA 5 cut(s) 79, 175, 236, 466, 475
AvaI CYCGRG 2 cut(s) 545, 755
AvaII GGWCC 1 cut(s) 417
AvrII CCTAGG 1 cut(s) 220
AxyI CCTNAGG 2 cut(s) 349, 714
BalI TGGCCA 1 cut(s) 305
BanI GGYRCC 1 cut(s) 559
BbvI GCAGC 2 cut(s) 186, 793
BccI CCATC 5 cut(s) 188, 254, 515, 745, 808
BceAI ACGGC 2 cut(s) 179, 418
BcgI CGANNNNNNTGC 8 cut(s) 188, 222, 394, 428, 593, 617, 627, 651
BcnI CCSGG 4 cut(s) 659, 756, 757, 769
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 2 cut(s) 221, 836
BisI GCNGC 4 cut(s) 175, 217, 765, 807
BlnI CCTAGG 1 cut(s) 220
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 4 cut(s) 176, 218, 766, 808
Bme1390I CCNGG 4 cut(s) 659, 756, 757, 769
Bme18I GGWCC 1 cut(s) 417
BmeT110I CYCGRG 2 cut(s) 545, 755
BmgT120I GGNCC 2 cut(s) 417, 758
BmiI GGNNCC 4 cut(s) 418, 519, 555, 561
BmrFI CCNGG 4 cut(s) 659, 756, 757, 769
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 3 cut(s) 605, 703, 781
BmuI ACTGGG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 579
BpuMI CCSGG 4 cut(s) 659, 756, 757, 769
BsaJI CCNNGG 4 cut(s) 220, 648, 755, 768
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 5 cut(s) 550, 664, 755, 767, 774
Bse1I ACTGG 1 cut(s) 588
Bse21I CCTNAGG 2 cut(s) 349, 714
BseAI TCCGGA 1 cut(s) 381
BseDI CCNNGG 4 cut(s) 220, 648, 755, 768
BseGI GGATG 3 cut(s) 596, 673, 724
BseLI CCNNNNNNNGG 5 cut(s) 550, 664, 755, 767, 774
BseMII CTCAG 2 cut(s) 363, 485
BseNI ACTGG 1 cut(s) 588
BseX3I CGGCCG 1 cut(s) 765
BseXI GCAGC 2 cut(s) 186, 793
Bsh1236I CGCG 1 cut(s) 798
Bsh1285I CGRYCG 1 cut(s) 768
BshFI GGCC 7 cut(s) 77, 219, 245, 305, 689, 760, 767
BshNI GGYRCC 1 cut(s) 559
BsiEI CGRYCG 1 cut(s) 768
BsiHKCI CYCGRG 2 cut(s) 545, 755
BsiSI CCGG 8 cut(s) 382, 557, 571, 593, 659, 686, 756, 768
BslFI GGGAC 2 cut(s) 630, 785
BslI CCNNNNNNNGG 5 cut(s) 550, 664, 755, 767, 774
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 630, 785
BsnI GGCC 7 cut(s) 77, 219, 245, 305, 689, 760, 767
BsoBI CYCGRG 2 cut(s) 545, 755
Bsp13I TCCGGA 1 cut(s) 381
Bsp143I GATC 3 cut(s) 162, 384, 535
Bsp1720I GCTNAGC 1 cut(s) 579
BspACI CCGC 4 cut(s) 216, 420, 764, 809
BspANI GGCC 7 cut(s) 77, 219, 245, 305, 689, 760, 767
BspCNI CTCAG 2 cut(s) 362, 484
BspEI TCCGGA 1 cut(s) 381
BspFNI CGCG 1 cut(s) 798
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 4 cut(s) 418, 519, 555, 561
BspPI GGATC 2 cut(s) 392, 530
BspT107I GGYRCC 1 cut(s) 559
BsrI ACTGG 1 cut(s) 588
BssECI CCNNGG 4 cut(s) 220, 648, 755, 768
BssMI GATC 3 cut(s) 162, 384, 535
BssT1I CCWWGG 1 cut(s) 220
Bst4CI ACNGT 3 cut(s) 187, 206, 620
BstC8I GCNNGC 4 cut(s) 303, 424, 762, 796
BstDEI CTNAG 6 cut(s) 349, 360, 471, 579, 714, 853
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 3 cut(s) 596, 673, 724
BstFNI CGCG 1 cut(s) 798
BstHHI GCGC 5 cut(s) 174, 323, 754, 800, 835
BstKTI GATC 3 cut(s) 165, 387, 538
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 162, 384, 535
BstMCI CGRYCG 1 cut(s) 768
BstMWI GCNNNNNNNGC 2 cut(s) 298, 806
BstSCI CCNGG 4 cut(s) 657, 754, 755, 767
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 2 cut(s) 186, 793
BstZI CGGCCG 1 cut(s) 765
Bsu36I CCTNAGG 2 cut(s) 349, 714
BsuRI GGCC 7 cut(s) 77, 219, 245, 305, 689, 760, 767
BtgI CCRYGG 1 cut(s) 648
BtsCI GGATG 3 cut(s) 596, 673, 724
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 211, 633
Cac8I GCNNGC 4 cut(s) 303, 424, 762, 796
CciI TCATGA 1 cut(s) 249
CfoI GCGC 5 cut(s) 174, 323, 754, 800, 835
Cfr13I GGNCC 2 cut(s) 417, 758
Cfr9I CCCGGG 1 cut(s) 755
CseI GACGC 3 cut(s) 223, 244, 343
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 250, 664
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 6 cut(s) 349, 360, 471, 579, 714, 853
DpnI GATC 3 cut(s) 164, 386, 537
DpnII GATC 3 cut(s) 162, 384, 535
DrdI GACNNNNNNGTC 2 cut(s) 233, 236
DseDI GACNNNNNNGTC 2 cut(s) 233, 236
EaeI YGGCCR 3 cut(s) 303, 687, 765
EagI CGGCCG 1 cut(s) 765
EclXI CGGCCG 1 cut(s) 765
Eco130I CCWWGG 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 417
Eco52I CGGCCG 1 cut(s) 765
Eco57I CTGAAG 1 cut(s) 479
Eco81I CCTNAGG 2 cut(s) 349, 714
Eco88I CYCGRG 2 cut(s) 545, 755
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 253, 667
FaiI YATR 5 cut(s) 212, 251, 512, 665, 699
FaqI GGGAC 2 cut(s) 630, 785
FatI CATG 2 cut(s) 249, 663
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 4 cut(s) 175, 217, 765, 807
FokI GGATG 3 cut(s) 583, 680, 731
Fsp4HI GCNGC 4 cut(s) 175, 217, 765, 807
FspBI CTAG 2 cut(s) 221, 836
GlaI GCGC 5 cut(s) 173, 322, 753, 799, 834
GluI GCNGC 4 cut(s) 175, 217, 765, 807
HaeIII GGCC 7 cut(s) 77, 219, 245, 305, 689, 760, 767
HapII CCGG 8 cut(s) 382, 557, 571, 593, 659, 686, 756, 768
HgaI GACGC 3 cut(s) 223, 244, 343
HhaI GCGC 5 cut(s) 174, 323, 754, 800, 835
Hin1II CATG 2 cut(s) 253, 667
Hin6I GCGC 5 cut(s) 172, 321, 752, 798, 833
HinP1I GCGC 5 cut(s) 172, 321, 752, 798, 833
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 5 cut(s) 608, 682, 725, 731, 745
HpaII CCGG 8 cut(s) 382, 557, 571, 593, 659, 686, 756, 768
HphI GGTGA 5 cut(s) 79, 175, 236, 466, 475
Hpy166II GTNNAC 2 cut(s) 199, 259
Hpy188I TCNGA 5 cut(s) 142, 604, 628, 681, 730
Hpy188III TCNNGA 2 cut(s) 250, 382
Hpy8I GTNNAC 2 cut(s) 199, 259
Hpy99I CGWCG 9 cut(s) 200, 239, 337, 398, 401, 404, 608, 632, 745
HpyAV CCTTC 7 cut(s) 43, 88, 133, 544, 549, 568, 633
HpyCH4III ACNGT 3 cut(s) 187, 206, 620
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 806
HpyF3I CTNAG 6 cut(s) 349, 360, 471, 579, 714, 853
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 2 cut(s) 253, 667
HspAI GCGC 5 cut(s) 172, 321, 752, 798, 833
Kpn2I TCCGGA 1 cut(s) 381
Kzo9I GATC 3 cut(s) 162, 384, 535
LmnI GCTCC 2 cut(s) 559, 682
Lsp1109I GCAGC 2 cut(s) 186, 793
LweI GCATC 3 cut(s) 605, 703, 781
MaeI CTAG 2 cut(s) 221, 836
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 224, 463
MalI GATC 3 cut(s) 164, 386, 537
MboI GATC 3 cut(s) 162, 384, 535
MboII GAAGA 2 cut(s) 28, 119
MlsI TGGCCA 1 cut(s) 305
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 3 cut(s) 602, 691, 754
MmeI TCCRAC 3 cut(s) 165, 627, 651
MnlI CCTC 7 cut(s) 34, 200, 278, 358, 508, 594, 610
Mox20I TGGCCA 1 cut(s) 305
MroI TCCGGA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 305
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 488
Msp20I TGGCCA 1 cut(s) 305
MspI CCGG 8 cut(s) 382, 557, 571, 593, 659, 686, 756, 768
MspR9I CCNGG 4 cut(s) 659, 756, 757, 769
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 2 cut(s) 298, 806
NciI CCSGG 4 cut(s) 659, 756, 757, 769
NdeII GATC 3 cut(s) 162, 384, 535
NlaIII CATG 2 cut(s) 253, 667
NlaIV GGNNCC 4 cut(s) 418, 519, 555, 561
NmuCI GTSAC 2 cut(s) 224, 463
PagI TCATGA 1 cut(s) 249
PcsI WCGNNNNNNNCGW 7 cut(s) 234, 267, 276, 393, 612, 636, 740
PfeI GAWTC 2 cut(s) 725, 731
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 4 cut(s) 176, 218, 766, 808
PleI GAGTC 3 cut(s) 602, 690, 753
PpsI GAGTC 3 cut(s) 602, 690, 753
PshBI ATTAAT 1 cut(s) 528
PspN4I GGNNCC 4 cut(s) 418, 519, 555, 561
PspPI GGNCC 2 cut(s) 417, 758
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 488
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 4 cut(s) 175, 217, 765, 807
Sau3AI GATC 3 cut(s) 162, 384, 535
Sau96I GGNCC 2 cut(s) 417, 758
SchI GAGTC 3 cut(s) 602, 691, 754
ScrFI CCNGG 4 cut(s) 659, 756, 757, 769
SfaNI GCATC 3 cut(s) 605, 703, 781
SinI GGWCC 1 cut(s) 417
SmaI CCCGGG 1 cut(s) 757
SmiMI CAYNNNNRTG 1 cut(s) 488
SrfI GCCCGGGC 1 cut(s) 757
SsiI CCGC 4 cut(s) 216, 420, 764, 809
SspMI CTAG 2 cut(s) 221, 836
StyD4I CCNGG 4 cut(s) 657, 754, 755, 767
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 3 cut(s) 187, 206, 620
TaiI ACGT 1 cut(s) 264
TaqI TCGA 4 cut(s) 99, 198, 270, 743
TaqII GACCGA 1 cut(s) 838
TauI GCSGC 2 cut(s) 219, 767
TfiI GAWTC 2 cut(s) 725, 731
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 2 cut(s) 211, 640
TseFI GTSAC 2 cut(s) 224, 463
TseI GCWGC 2 cut(s) 174, 806
Tsp45I GTSAC 2 cut(s) 224, 463
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 2 cut(s) 478, 665
TspMI CCCGGG 1 cut(s) 755
TspRI CASTG 2 cut(s) 211, 640
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 417
VspI ATTAAT 1 cut(s) 528
XmaI CCCGGG 1 cut(s) 755
XmaJI CCTAGG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 2 cut(s) 221, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.