Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001500

Physical Location & Seq

Genomic Coordinates Forward (+)

23747666 .. 23748799

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGGGCAACAAAACTAAAGCCTCGATGTTCTTCGTCCTCCTCTCCATGTTGTCCATCAGGTCTTGTTCAGCTTTCAATATCACAAAGCTACTCAACAAAGAATCCGATTTCAGCACCTTTAACAAGTACCTCTCCGCAACCAAACTCGCCGACGAGATCAACAAGCAAAGCACGATTACGGTCCTCGCCCTGAACAACGACGCCATGGGCGGTATCTCTAGCGACAACAGCTTCCCCCTCAAGTCTGTCATGAGCGTCCACATTATACTTGACTACTTCGATAAGGAGAAGTTGGCCAAGCTGGCCAAGAACAATAGTAGCACCAAGCTGACGACTCTGTTCCAGAGTTCGGGCGAGGCTAAGGACCAACAGGGCTTCGTTCGGGTCGAAGTCGTTGACGGTGAGATTTTTTTCGGGTCAGCATCCAAGGGTGCACAAATGAACTCCAAGCTGGTTAGGTCGGTGACAGCTCAGCCCTACAACATTTCCGTGCTTGAGGTTAGCTCCATCATTAGGGTTCCCAACATCAATGCTTCTCCGGCGCCTGAGAAAGCTCCGGCGCCGAAGAAAGGCAAGTCTCCGAGTCTGAAAGACGAGGCCGAGAGTCCTTCCGAAGACACCGCTGAAAGTCCCGCCGGTGATGAGAAGGATGAGGCTCCCAGTCCGTCCAAAGCAACAGATTCGACGCCGCCCAAGCCGGGTTATGAGGATGATGTGATAACGGCAGATTCGCCTTCGTCGACTCCCACAGCTTGGGACTATAGTGATGCACGCGCCACCGATGCTGAGATGGGATTTCGGGTTGTTACTATGGGGCTTGCTTCAGTATTGGTTGCTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

283

Amino Acids

30.25

Weight (kDa)

5.06

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	37 - 118	1e-06	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12660
fragaria_vesca	FvH4_2g30720 FvH4_2g30730 FvH4_2g30760 FvH4_6g28020
malus_domestica	MD08G1131800.v1.1 MD08G1134300.v1.1 MD15G1109400.v1.1 MD15G1109500.v1.1
prunus_persica	Prupe.1G461700_v2.0.a1 Prupe.1G461800_v2.0.a1
pyrus_communis	pycom08g11330 pycom15g09970
rosa_chinensis	RchiOBHm_Chr2g0131711 RchiOBHm_Chr6g0312141 RchiOBHm_Chr6g0312161
rosa_laevigata	RLG00000010348 RLG00000010349 RLG00000010351 RLG00000019203
rosa_multiflora	Rmu_sc0002589.1_g000028 Rmu_sc0004065.1_g000005 Rmu_sc0009794.1_g000007 Rmu_sc0009880.1_g000016 Rmu_sc0036403.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112680 Rroxscaffold_7G00156990 Rroxscaffold_7G00157000
rosa_rugosa	Rorug02G0299200 Rorug06G0393000 Rorug06G0393100 Rorug06G0393300
rosa_samantha	Rh2AG351800 Rh2BG358800 Rh2CG337300 Rh6AG510000 Rh6AG510300 Rh6AG510400 Rh6BG520900 Rh6BG521200 Rh6BG521300 Rh6CG526900 Rh6CG527100 Rh6CG527200 Rh6DG512200 Rh6DG512500 Rh6DG512600
rosa_wichuraiana	Rw2G028570 Rw6G044370 Rw6G044390 Rw6G044400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	544, 562
AccB7I	CCANNNNNTGG	1 cut(s)	756
AccI	GTMKAC	1 cut(s)	743
AccII	CGCG	1 cut(s)	777
AciI	CCGC	5 cut(s)	138, 213, 624, 636, 692
AcoI	YGGCCR	2 cut(s)	297, 306
AcuI	CTGAAG	1 cut(s)	810
AcyI	GRCGYC	4 cut(s)	204, 545, 563, 689
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	5 cut(s)	352, 516, 572, 701, 756
AgsI	TTSAA	1 cut(s)	79
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	585
Alw44I	GTGCAC	1 cut(s)	435
AoxI	GGCC	3 cut(s)	297, 306, 600
ApaLI	GTGCAC	1 cut(s)	435
AspLEI	GCGC	3 cut(s)	547, 565, 779
AspS9I	GGNCC	2 cut(s)	184, 367
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	3 cut(s)	416, 478, 653
AvaII	GGWCC	2 cut(s)	184, 367
BaeGI	GKGCMC	1 cut(s)	439
BalI	TGGCCA	2 cut(s)	299, 308
BanI	GGYRCC	2 cut(s)	544, 562
BbsI	GAAGAC	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	439
BccI	CCATC	3 cut(s)	65, 518, 787
BceAI	ACGGC	1 cut(s)	741
BcgI	CGANNNNNNTGC	2 cut(s)	666, 700
BcnI	CCSGG	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	763
BfoI	RGCGCY	2 cut(s)	548, 566
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	692
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	693
Bme1390I	CCNGG	1 cut(s)	702
Bme18I	GGWCC	2 cut(s)	184, 367
BmgT120I	GGNCC	2 cut(s)	184, 367
BmiI	GGNNCC	4 cut(s)	522, 546, 564, 660
BmrFI	CCNGG	1 cut(s)	702
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	3 cut(s)	434, 760, 775
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	227, 518
BpuMI	CCSGG	1 cut(s)	702
BsaHI	GRCGYC	4 cut(s)	204, 545, 563, 689
BsaJI	CCNNGG	2 cut(s)	207, 429
Bsc4I	CCNNNNNNNGG	5 cut(s)	352, 516, 572, 701, 756
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	1 cut(s)	663
BseDI	CCNNGG	2 cut(s)	207, 429
BseGI	GGATG	3 cut(s)	425, 658, 718
BseLI	CCNNNNNNNGG	5 cut(s)	352, 516, 572, 701, 756
BseMII	CTCAG	3 cut(s)	488, 540, 780
BseNI	ACTGG	1 cut(s)	663
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	3 cut(s)	299, 308, 602
BshNI	GGYRCC	2 cut(s)	544, 562
BsiHKAI	GWGCWC	1 cut(s)	439
BsiSI	CCGG	4 cut(s)	542, 560, 639, 701
BslFI	GGGAC	2 cut(s)	618, 773
BslI	CCNNNNNNNGG	5 cut(s)	352, 516, 572, 701, 756
BsmAI	GTCTC	1 cut(s)	585
BsmFI	GGGAC	2 cut(s)	618, 773
BsnI	GGCC	3 cut(s)	299, 308, 602
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	159
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	5 cut(s)	138, 213, 624, 636, 692
BspANI	GGCC	3 cut(s)	299, 308, 602
BspCNI	CTCAG	3 cut(s)	487, 541, 781
BspFNI	CGCG	1 cut(s)	777
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	522, 546, 564, 660
BspT107I	GGYRCC	2 cut(s)	544, 562
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	663
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	2 cut(s)	207, 429
BssMI	GATC	1 cut(s)	159
BssNI	GRCGYC	4 cut(s)	204, 545, 563, 689
BssT1I	CCWWGG	2 cut(s)	207, 429
Bst4CI	ACNGT	2 cut(s)	184, 404
BstACI	GRCGYC	4 cut(s)	204, 545, 563, 689
BstC8I	GCNNGC	3 cut(s)	306, 775, 822
BstDEI	CTNAG	4 cut(s)	363, 474, 549, 789
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	3 cut(s)	425, 658, 718
BstFNI	CGCG	1 cut(s)	777
BstH2I	RGCGCY	2 cut(s)	548, 566
BstHHI	GCGC	3 cut(s)	547, 565, 779
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	5 cut(s)	231, 305, 542, 697, 785
BstSCI	CCNGG	1 cut(s)	700
BstSFI	CTRYAG	1 cut(s)	763
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	1 cut(s)	777
BstV2I	GAAGAC	1 cut(s)	624
BsuRI	GGCC	3 cut(s)	299, 308, 602
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	425, 658, 718
Cac8I	GCNNGC	3 cut(s)	306, 775, 822
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	3 cut(s)	547, 565, 779
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	184, 367
CseI	GACGC	3 cut(s)	212, 247, 697
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	49, 208, 253
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	4 cut(s)	363, 474, 549, 789
DinI	GGCGCC	2 cut(s)	546, 564
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EaeI	YGGCCR	2 cut(s)	297, 306
Eco130I	CCWWGG	2 cut(s)	207, 429
Eco47I	GGWCC	2 cut(s)	184, 367
Eco57I	CTGAAG	1 cut(s)	810
EcoT14I	CCWWGG	2 cut(s)	207, 429
EgeI	GGCGCC	2 cut(s)	546, 564
EheI	GGCGCC	2 cut(s)	546, 564
ErhI	CCWWGG	2 cut(s)	207, 429
FaeI	CATG	3 cut(s)	52, 211, 256
FaiI	YATR	7 cut(s)	50, 209, 254, 269, 708, 765, 815
FaqI	GGGAC	2 cut(s)	618, 773
FatI	CATG	3 cut(s)	48, 207, 252
FauI	CCCGC	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	743
Fnu4HI	GCNGC	1 cut(s)	692
FokI	GGATG	3 cut(s)	412, 665, 725
Fsp4HI	GCNGC	1 cut(s)	692
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	3 cut(s)	546, 564, 778
GluI	GCNGC	1 cut(s)	692
HaeII	RGCGCY	2 cut(s)	548, 566
HaeIII	GGCC	3 cut(s)	299, 308, 602
HapII	CCGG	4 cut(s)	542, 560, 639, 701
HgaI	GACGC	3 cut(s)	212, 247, 697
HhaI	GCGC	3 cut(s)	547, 565, 779
Hin1I	GRCGYC	4 cut(s)	204, 545, 563, 689
Hin1II	CATG	3 cut(s)	52, 211, 256
Hin6I	GCGC	3 cut(s)	545, 563, 777
HinP1I	GCGC	3 cut(s)	545, 563, 777
HincII	GTYRAC	2 cut(s)	400, 744
HindII	GTYRAC	2 cut(s)	400, 744
HinfI	GANTC	7 cut(s)	104, 337, 586, 607, 683, 731, 745
HpaII	CCGG	4 cut(s)	542, 560, 639, 701
HphI	GGTGA	3 cut(s)	416, 478, 653
Hpy166II	GTNNAC	4 cut(s)	262, 400, 437, 744
Hpy188I	TCNGA	5 cut(s)	109, 585, 591, 616, 848
Hpy188III	TCNNGA	2 cut(s)	253, 346
Hpy8I	GTNNAC	4 cut(s)	262, 400, 437, 744
Hpy99I	CGWCG	4 cut(s)	158, 206, 691, 745
HpyAV	CCTTC	3 cut(s)	621, 643, 747
HpyCH4III	ACNGT	2 cut(s)	184, 404
HpyCH4V	TGCA	2 cut(s)	437, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	231, 305, 542, 697, 785
HpyF3I	CTNAG	4 cut(s)	363, 474, 549, 789
Hsp92I	GRCGYC	4 cut(s)	204, 545, 563, 689
Hsp92II	CATG	3 cut(s)	52, 211, 256
HspAI	GCGC	3 cut(s)	545, 563, 777
KasI	GGCGCC	2 cut(s)	544, 562
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	3 cut(s)	512, 562, 664
LweI	GCATC	3 cut(s)	434, 760, 775
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	466, 808
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	4 cut(s)	25, 580, 629, 835
MhlI	GDGCHC	1 cut(s)	439
MlsI	TGGCCA	2 cut(s)	299, 308
MluNI	TGGCCA	2 cut(s)	299, 308
Mly113I	GGCGCC	2 cut(s)	545, 563
MlyI	GAGTC	4 cut(s)	331, 595, 616, 739
Mox20I	TGGCCA	2 cut(s)	299, 308
MscI	TGGCCA	2 cut(s)	299, 308
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	2 cut(s)	299, 308
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	4 cut(s)	542, 560, 639, 701
MspR9I	CCNGG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	777
MwoI	GCNNNNNNNGC	5 cut(s)	231, 305, 542, 697, 785
NarI	GGCGCC	2 cut(s)	545, 563
NciI	CCSGG	1 cut(s)	702
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	3 cut(s)	52, 211, 256
NlaIV	GGNNCC	4 cut(s)	522, 546, 564, 660
NmeAIII	GCCGAG	1 cut(s)	628
NmuCI	GTSAC	1 cut(s)	466
PagI	TCATGA	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	2 cut(s)	387, 740
PfeI	GAWTC	3 cut(s)	104, 683, 731
PflMI	CCANNNNNTGG	1 cut(s)	756
PkrI	GCNGC	1 cut(s)	693
PleI	GAGTC	4 cut(s)	331, 594, 615, 739
PluTI	GGCGCC	2 cut(s)	548, 566
PpsI	GAGTC	4 cut(s)	331, 594, 615, 739
PspN4I	GGNNCC	4 cut(s)	522, 546, 564, 660
PspPI	GGNCC	2 cut(s)	184, 367
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	491
SalI	GTCGAC	1 cut(s)	742
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	692
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	2 cut(s)	184, 367
SchI	GAGTC	4 cut(s)	331, 595, 616, 739
ScrFI	CCNGG	1 cut(s)	702
SduI	GDGCHC	1 cut(s)	439
SfaNI	GCATC	3 cut(s)	434, 760, 775
SfcI	CTRYAG	1 cut(s)	763
SfiI	GGCCNNNNNGGCC	1 cut(s)	305
SfoI	GGCGCC	2 cut(s)	546, 564
SgrAI	CRCCGGYG	1 cut(s)	638
SinI	GGWCC	2 cut(s)	184, 367
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	242, 497
SmoI	CTYRAG	2 cut(s)	242, 497
SsiI	CCGC	5 cut(s)	138, 213, 624, 636, 692
SspDI	GGCGCC	2 cut(s)	544, 562
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	700
StyI	CCWWGG	2 cut(s)	207, 429
TaaI	ACNGT	2 cut(s)	184, 404
TaqI	TCGA	5 cut(s)	26, 282, 390, 686, 743
TauI	GCSGC	1 cut(s)	694
TfiI	GAWTC	3 cut(s)	104, 683, 731
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	2 cut(s)	481, 657
Van91I	CCANNNNNTGG	1 cut(s)	756
VneI	GTGCAC	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	184, 367
XmiI	GTMKAC	1 cut(s)	743
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.