RLG00000010351

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001500
Physical Location & Seq
Forward (+)
899319 .. 900904
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010351

Sequence Viewer

Length: 900 bp
ATGGATGAGGTGGGCCCAAAGAGGTTGCGATCGAAGGAGGCCGCAGAGTTAATGGAAACTTCTATGGAGGAGATTTTGGAGCGTCAAGCTATTCTTCACTCAGAGATGGCATCAAGCTCGAATCAACTACTTAACAAAGAATCCGATTTCAGCACCTTTAACAAATACCTCTCCGAGACCAAACTCGCTGACCAGATCAACAAGCGAAGCACCATCACCGTCCTCGCCGTGGCCAACGACGCAATGGGGGGCCTCTCTAACGACGACAGCTTCACCCTCAAGTCCGCCATGAGCGGCCACGTCATCCTCGACTACTACGACAAGGAGAAGTTGGCTAAGCTTGCCAAGAACAATAGAAGCGCCACGCTGACGTCTCTATTCCAGAGTTCGGGCGTGGCTCAAAACCAACAGGGCTTCGTTCGGGTCGAAGTCGTTGACGGTGAGATTTTTTTCGGGTCAGCATCCAAGGGTGCACAAATGAACTCCAAGCTAGTTAAGTCGGTGGCAGCTCAGCCCTACAACATTTCCGTGCTTGAGGTCAGCTCCATCATTGGGGTTCCCAACATCAATGCTTCTCCGGCGCCCGAGAAGGCTCCGGCACCGAAGAAAGGCAAGTCTGCCAGTCCGGAAGACGAGGCAGAGAGTCCTTCCGAAGACACCGCTGAAAGTCCCGCCGATGACACGTCGGACTCGGACTCGGAGGCTCCGAGTCCGTCCAAAGCCAGAGATTCGACTCCGCCCAAGCCAGGTTATGAGGATGATCTGGTGACGGCAGATTCGCCATCTTCGACTCCGGCACCTGCGCCCTCCAAGAATGATGTACGCGCCACCGCTGCTGAGATGGGAGTTGGGGTTGTTGCGATGGGGTTGGTTATTTCAGCATTGGTTGCTTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

300

Amino Acids

31.58

Weight (kDa)

4.69

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 49 - 153 4.6e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 808
AatII GACGTC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 3 cut(s) 580, 598, 796
AccBSI CCGCTC 1 cut(s) 294
AccII CGCG 1 cut(s) 825
AccIII TCCGGA 1 cut(s) 625
AciI CCGC 7 cut(s) 42, 285, 294, 660, 672, 737, 831
AcoI YGGCCR 2 cut(s) 231, 295
AcyI GRCGYC 2 cut(s) 371, 581
AfaI GTAC 1 cut(s) 822
AfiI CCNNNNNNNGG 5 cut(s) 229, 388, 552, 608, 746
AflIII ACRYGT 1 cut(s) 681
AjiI CACGTC 2 cut(s) 301, 684
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 7 cut(s) 89, 117, 270, 340, 490, 509, 543
AluI AGCT 7 cut(s) 89, 117, 270, 340, 490, 509, 543
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 170, 378
Alw44I GTGCAC 1 cut(s) 471
Ama87I CYCGRG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 625
AoxI GGCC 5 cut(s) 13, 39, 231, 250, 295
ApaI GGGCCC 1 cut(s) 17
ApaLI GTGCAC 1 cut(s) 471
ApeKI GCWGC 2 cut(s) 506, 833
ArsI GACNNNNNNTTYG 2 cut(s) 760, 792
AspLEI GCGC 4 cut(s) 362, 583, 805, 827
AspS9I GGNCC 3 cut(s) 13, 14, 250
AsuHPI GGTGA 4 cut(s) 208, 265, 452, 778
AvaI CYCGRG 1 cut(s) 584
BaeGI GKGCMC 2 cut(s) 17, 475
BalI TGGCCA 1 cut(s) 233
BanI GGYRCC 3 cut(s) 580, 598, 796
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 2 cut(s) 636, 660
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 518, 820
BccI CCATC 6 cut(s) 100, 221, 554, 790, 835, 856
BceAI ACGGC 2 cut(s) 212, 786
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 747
BcoDI GTCTC 2 cut(s) 170, 378
BfaI CTAG 1 cut(s) 491
BfoI RGCGCY 2 cut(s) 363, 584
BfuAI ACCTGC 1 cut(s) 808
BisI GCNGC 4 cut(s) 42, 295, 507, 834
BlpI GCTNAGC 2 cut(s) 336, 510
BlsI GCNGC 4 cut(s) 43, 296, 508, 835
Bme1390I CCNGG 1 cut(s) 747
BmeT110I CYCGRG 1 cut(s) 584
BmgBI CACGTC 2 cut(s) 301, 684
BmgT120I GGNCC 3 cut(s) 13, 14, 250
BmiI GGNNCC 8 cut(s) 15, 251, 558, 582, 594, 600, 705, 798
BmrFI CCNGG 1 cut(s) 747
BmsI GCATC 2 cut(s) 119, 470
BpiI GAAGAC 2 cut(s) 636, 660
BplI GAGNNNNNCTC 2 cut(s) 527, 559
Bpu1102I GCTNAGC 2 cut(s) 336, 510
BpuEI CTTGAG 2 cut(s) 263, 554
BsaHI GRCGYC 2 cut(s) 371, 581
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 228, 465
BsaWI WCCGGW 1 cut(s) 625
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 388, 552, 608, 746
Bse1I ACTGG 1 cut(s) 621
Bse3DI GCAATG 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 625
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 2 cut(s) 228, 465
BseGI GGATG 4 cut(s) 10, 303, 461, 763
BseLI CCNNNNNNNGG 5 cut(s) 229, 388, 552, 608, 746
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 3 cut(s) 114, 524, 828
BseNI ACTGG 1 cut(s) 621
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 2 cut(s) 17, 475
BseXI GCAGC 2 cut(s) 518, 820
Bsh1236I CGCG 1 cut(s) 825
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 5 cut(s) 15, 41, 233, 252, 297
BshNI GGYRCC 3 cut(s) 580, 598, 796
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 4 cut(s) 578, 596, 626, 794
BslFI GGGAC 1 cut(s) 654
BslI CCNNNNNNNGG 5 cut(s) 229, 388, 552, 608, 746
BsmAI GTCTC 2 cut(s) 170, 378
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 654
BsnI GGCC 5 cut(s) 15, 41, 233, 252, 297
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 584
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 17, 475
Bsp13I TCCGGA 1 cut(s) 625
Bsp143I GATC 3 cut(s) 29, 195, 760
Bsp1720I GCTNAGC 2 cut(s) 336, 510
BspACI CCGC 7 cut(s) 42, 285, 294, 660, 672, 737, 831
BspANI GGCC 5 cut(s) 15, 41, 233, 252, 297
BspCNI CTCAG 3 cut(s) 113, 523, 829
BspEI TCCGGA 1 cut(s) 625
BspFNI CGCG 1 cut(s) 825
BspLI GGNNCC 8 cut(s) 15, 251, 558, 582, 594, 600, 705, 798
BspMI ACCTGC 1 cut(s) 808
BspT107I GGYRCC 3 cut(s) 580, 598, 796
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 2 cut(s) 228, 465
BssMI GATC 3 cut(s) 29, 195, 760
BssNI GRCGYC 2 cut(s) 371, 581
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 2 cut(s) 220, 440
BstACI GRCGYC 2 cut(s) 371, 581
BstAPI GCANNNNNTGC 1 cut(s) 887
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 4 cut(s) 100, 336, 510, 837
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 4 cut(s) 10, 303, 461, 763
BstFNI CGCG 1 cut(s) 825
BstH2I RGCGCY 2 cut(s) 363, 584
BstHHI GCGC 4 cut(s) 362, 583, 805, 827
BstKTI GATC 3 cut(s) 32, 198, 763
BstMAI GTCTC 2 cut(s) 170, 378
BstMBI GATC 3 cut(s) 29, 195, 760
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 5 cut(s) 239, 341, 578, 833, 887
BstNI CCWGG 1 cut(s) 747
BstSCI CCNGG 1 cut(s) 745
BstSLI GKGCMC 2 cut(s) 17, 475
BstUI CGCG 1 cut(s) 825
BstV1I GCAGC 2 cut(s) 518, 820
BstV2I GAAGAC 2 cut(s) 636, 660
BsuRI GGCC 5 cut(s) 15, 41, 233, 252, 297
BtgI CCRYGG 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 875
BtrI CACGTC 2 cut(s) 301, 684
BtsCI GGATG 4 cut(s) 10, 303, 461, 763
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 4 cut(s) 362, 583, 805, 827
Cfr13I GGNCC 3 cut(s) 13, 14, 250
CseI GACGC 2 cut(s) 71, 248
Csp6I GTAC 1 cut(s) 821
CviAII CATG 1 cut(s) 289
CviQI GTAC 1 cut(s) 821
DdeI CTNAG 4 cut(s) 100, 336, 510, 837
DinI GGCGCC 1 cut(s) 582
DpnI GATC 3 cut(s) 31, 197, 762
DpnII GATC 3 cut(s) 29, 195, 760
EaeI YGGCCR 2 cut(s) 231, 295
EciI GGCGGA 2 cut(s) 274, 726
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 17
EgeI GGCGCC 1 cut(s) 582
EheI GGCGCC 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 1 cut(s) 292
FaiI YATR 3 cut(s) 65, 290, 753
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 654
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 679
Fnu4HI GCNGC 4 cut(s) 42, 295, 507, 834
FokI GGATG 4 cut(s) 17, 290, 448, 770
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 42, 295, 507, 834
FspBI CTAG 1 cut(s) 491
GlaI GCGC 4 cut(s) 361, 582, 804, 826
GluI GCNGC 4 cut(s) 42, 295, 507, 834
HaeII RGCGCY 2 cut(s) 363, 584
HaeIII GGCC 5 cut(s) 15, 41, 233, 252, 297
HapII CCGG 4 cut(s) 578, 596, 626, 794
HgaI GACGC 2 cut(s) 71, 248
HhaI GCGC 4 cut(s) 362, 583, 805, 827
Hin1I GRCGYC 2 cut(s) 371, 581
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 4 cut(s) 360, 581, 803, 825
HinP1I GCGC 4 cut(s) 360, 581, 803, 825
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 338
HpaII CCGG 4 cut(s) 578, 596, 626, 794
HphI GGTGA 4 cut(s) 208, 265, 452, 778
Hpy166II GTNNAC 2 cut(s) 436, 473
Hpy188I TCNGA 9 cut(s) 103, 145, 175, 652, 688, 694, 700, 708, 899
Hpy188III TCNNGA 2 cut(s) 382, 626
Hpy8I GTNNAC 2 cut(s) 436, 473
Hpy99I CGWCG 3 cut(s) 242, 266, 688
HpyAV CCTTC 3 cut(s) 28, 583, 657
HpyCH4III ACNGT 2 cut(s) 220, 440
HpyCH4IV ACGT 3 cut(s) 300, 371, 683
HpyCH4V TGCA 1 cut(s) 473
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 341, 578, 833, 887
HpyF3I CTNAG 4 cut(s) 100, 336, 510, 837
HpySE526I ACGT 3 cut(s) 300, 371, 683
Hsp92I GRCGYC 2 cut(s) 371, 581
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 4 cut(s) 360, 581, 803, 825
KasI GGCGCC 1 cut(s) 580
Kpn2I TCCGGA 1 cut(s) 625
Kzo9I GATC 3 cut(s) 29, 195, 760
LmnI GCTCC 4 cut(s) 79, 548, 598, 709
Lsp1109I GCAGC 2 cut(s) 518, 820
LweI GCATC 2 cut(s) 119, 470
MaeI CTAG 1 cut(s) 491
MaeII ACGT 3 cut(s) 300, 371, 683
MaeIII GTNAC 1 cut(s) 766
MalI GATC 3 cut(s) 31, 197, 762
MbiI CCGCTC 1 cut(s) 294
MboI GATC 3 cut(s) 29, 195, 760
MboII GAAGA 5 cut(s) 86, 616, 641, 665, 777
MhlI GDGCHC 2 cut(s) 17, 475
MlsI TGGCCA 1 cut(s) 233
MluNI TGGCCA 1 cut(s) 233
Mly113I GGCGCC 1 cut(s) 581
MlyI GAGTC 6 cut(s) 652, 683, 689, 718, 727, 784
MmeI TCCRAC 1 cut(s) 666
Mox20I TGGCCA 1 cut(s) 233
MroI TCCGGA 1 cut(s) 625
MscI TGGCCA 1 cut(s) 233
MseI TTAA 4 cut(s) 50, 132, 159, 495
MslI CAYNNNNRTG 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 2 cut(s) 662, 833
MspI CCGG 4 cut(s) 578, 596, 626, 794
MspR9I CCNGG 1 cut(s) 747
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 1 cut(s) 825
MwoI GCNNNNNNNGC 5 cut(s) 239, 341, 578, 833, 887
NarI GGCGCC 1 cut(s) 581
NdeII GATC 3 cut(s) 29, 195, 760
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 8 cut(s) 15, 251, 558, 582, 594, 600, 705, 798
NmuCI GTSAC 1 cut(s) 766
PaqCI CACCTGC 1 cut(s) 808
PcsI WCGNNNNNNNCGW 5 cut(s) 306, 315, 423, 704, 785
PfeI GAWTC 4 cut(s) 121, 140, 728, 776
PkrI GCNGC 4 cut(s) 43, 296, 508, 835
Ple19I CGATCG 1 cut(s) 32
PleI GAGTC 6 cut(s) 651, 683, 689, 717, 727, 784
PluTI GGCGCC 1 cut(s) 584
PpsI GAGTC 6 cut(s) 651, 683, 689, 717, 727, 784
Psp6I CCWGG 1 cut(s) 745
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 8 cut(s) 15, 251, 558, 582, 594, 600, 705, 798
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 3 cut(s) 13, 14, 250
PvuI CGATCG 1 cut(s) 32
RsaI GTAC 1 cut(s) 822
RsaNI GTAC 1 cut(s) 821
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 4 cut(s) 50, 132, 159, 495
SatI GCNGC 4 cut(s) 42, 295, 507, 834
Sau3AI GATC 3 cut(s) 29, 195, 760
Sau96I GGNCC 3 cut(s) 13, 14, 250
SchI GAGTC 6 cut(s) 652, 683, 689, 718, 727, 784
ScrFI CCNGG 1 cut(s) 747
SduI GDGCHC 2 cut(s) 17, 475
SfaNI GCATC 2 cut(s) 119, 470
SfoI GGCGCC 1 cut(s) 582
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 2 cut(s) 278, 533
SmoI CTYRAG 2 cut(s) 278, 533
SsiI CCGC 7 cut(s) 42, 285, 294, 660, 672, 737, 831
SspDI GGCGCC 1 cut(s) 580
SspMI CTAG 1 cut(s) 491
StyD4I CCNGG 1 cut(s) 745
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 220, 440
TaiI ACGT 3 cut(s) 303, 374, 686
TaqI TCGA 6 cut(s) 32, 119, 309, 426, 731, 788
TauI GCSGC 2 cut(s) 44, 297
TfiI GAWTC 4 cut(s) 121, 140, 728, 776
Tru1I TTAA 4 cut(s) 50, 132, 159, 495
Tru9I TTAA 4 cut(s) 50, 132, 159, 495
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 2 cut(s) 506, 833
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 1 cut(s) 494
TspGWI ACGGA 2 cut(s) 517, 702
VneI GTGCAC 1 cut(s) 471
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 1 cut(s) 491
ZraI GACGTC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.