Prupe.1G461700_v2.0.a1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001500
Physical Location & Seq
Reverse (-)
38612357 .. 38613214
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G461700.1

Sequence Viewer

Length: 858 bp
ATGGAACATAGAGCCTCTTCCCTCCTCTTCTTCTTCTTCCTTGCCGTCTTCCTTGCATTCTTCTCGTCACCCTCCTCTGTCTCTGCCTTCAACATCACCAAGCTCCTCGAGAAGCAATCCGACTTCTCCAACTTCAACAACCTCCTCTCCCAGACTAAGCTCGCCGACGAGATCAACAGACGCAGCACCATCACCATCCTCGCAGTGGACAATGGCGGTGCGGGAGGCCTCTCCGGGGAGTCTTCCGATATGGCCAAGAAGATCCTGAGCGTCCACGTGGTGTTGGACTACTACGATCAGGACAAGCTCAAGAAGATCTTCAAATCAAACAAGTCCGCCACTCTCACAACTTTGTTCCAGTCGACAGGTCAGGCAAGGCGGGAGCAAGGCTTCATCAAGGTTTCGGTGAACAACGGACAAATTTCCTTCGAGTCTGCAGCCAAGGGCGGGAATGGCAACAGTGTAAACTTTGTTAAGTCGGTTGTTTCCCAGCCCTACAACATTTCAGTGCTTCAGGTGGGGTCCATTATTAATGTTCCTGACATGGAGTCGTCCTCCTCGGGCCCTGCCAGCTCACCCAAGTCTGCCAAGGCCCCAAGCCCCTCGAAGTCCAAGAAGGACGACTCTGATGACGAAGCTCCAAGCTCGTCAGACGAGGCTCCAGCTCCGTCAAAGCACAAAGGTAAGGGCAAAGGAAATGACAAATCCTCGCCGCCAGTATCTGCTGACTCAGCTTCAGATAGTACAGCGCCCACGCCTTCGGCACCTGCGCCCTCTGCAGCTTCACGCACTCGTGAGATCATGGCCGTTGGTGCCGGGGTGGTGATCATGGGGCTGGTTTCGCTTTTGGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

286

Amino Acids

29.79

Weight (kDa)

9.12

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 775
Acc36I ACCTGC 1 cut(s) 775
AccB1I GGYRCC 2 cut(s) 763, 812
AccI GTMKAC 1 cut(s) 362
AciI CCGC 6 cut(s) 216, 221, 336, 379, 447, 713
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 2 cut(s) 252, 804
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 2 cut(s) 497, 720
AcvI CACGTG 1 cut(s) 277
AdeI CACNNNGTG 1 cut(s) 280
AfaI GTAC 1 cut(s) 745
AfiI CCNNNNNNNGG 3 cut(s) 205, 235, 447
AgsI TTSAA 3 cut(s) 91, 136, 322
AhdI GACNNNNNGTC 1 cut(s) 547
AluBI AGCT 9 cut(s) 103, 160, 307, 573, 638, 645, 665, 734, 782
AluI AGCT 9 cut(s) 103, 160, 307, 573, 638, 645, 665, 734, 782
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 2 cut(s) 107, 559
AoxI GGCC 5 cut(s) 226, 252, 562, 591, 804
ApaI GGGCCC 1 cut(s) 566
ApeKI GCWGC 4 cut(s) 183, 437, 779, 851
ApoI RAATTY 1 cut(s) 420
AseI ATTAAT 1 cut(s) 531
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 2 cut(s) 751, 772
AspS9I GGNCC 4 cut(s) 522, 562, 563, 592
AsuC2I CCSGG 2 cut(s) 235, 817
AsuHPI GGTGA 6 cut(s) 60, 88, 184, 418, 567, 835
AvaI CYCGRG 2 cut(s) 107, 559
AvaII GGWCC 1 cut(s) 522
BaeGI GKGCMC 1 cut(s) 566
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 2 cut(s) 763, 812
BanII GRGCYC 1 cut(s) 566
BauI CACGAG 1 cut(s) 792
BbrPI CACGTG 1 cut(s) 277
BbsI GAAGAC 2 cut(s) 40, 234
BbvI GCAGC 4 cut(s) 195, 449, 791, 838
BccI CCATC 2 cut(s) 197, 203
BceAI ACGGC 2 cut(s) 29, 791
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BclI TGATCA 1 cut(s) 825
BcnI CCSGG 2 cut(s) 235, 817
BcoDI GTCTC 1 cut(s) 85
BfmI CTRYAG 2 cut(s) 435, 777
BfoI RGCGCY 1 cut(s) 752
BfuAI ACCTGC 1 cut(s) 775
BglII AGATCT 1 cut(s) 315
BisI GCNGC 5 cut(s) 184, 438, 713, 780, 852
BlsI GCNGC 5 cut(s) 185, 439, 714, 781, 853
Bme1390I CCNGG 2 cut(s) 235, 817
Bme18I GGWCC 1 cut(s) 522
BmeRI GACNNNNNGTC 1 cut(s) 547
BmeT110I CYCGRG 2 cut(s) 107, 559
BmgT120I GGNCC 4 cut(s) 522, 562, 563, 592
BmiI GGNNCC 6 cut(s) 523, 564, 594, 660, 765, 814
BmrFI CCNGG 2 cut(s) 235, 817
BpiI GAAGAC 2 cut(s) 40, 234
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 235, 817
BsaAI YACGTR 1 cut(s) 277
BsaJI CCNNGG 5 cut(s) 234, 441, 558, 588, 816
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 235, 447
Bse1I ACTGG 2 cut(s) 358, 716
BseDI CCNNGG 5 cut(s) 234, 441, 558, 588, 816
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 3 cut(s) 205, 235, 447
BseMII CTCAG 2 cut(s) 257, 744
BseNI ACTGG 2 cut(s) 358, 716
BseRI GAGGAG 5 cut(s) 14, 64, 95, 134, 547
BseSI GKGCMC 1 cut(s) 566
BseXI GCAGC 4 cut(s) 195, 449, 791, 838
BseYI CCCAGC 1 cut(s) 489
BshFI GGCC 5 cut(s) 228, 254, 564, 593, 806
BshNI GGYRCC 2 cut(s) 763, 812
BsiHKCI CYCGRG 2 cut(s) 107, 559
BsiSI CCGG 2 cut(s) 234, 816
BslI CCNNNNNNNGG 3 cut(s) 205, 235, 447
BsmAI GTCTC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 5 cut(s) 228, 254, 564, 593, 806
BsoBI CYCGRG 2 cut(s) 107, 559
Bsp120I GGGCCC 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 6 cut(s) 171, 261, 295, 315, 798, 825
BspACI CCGC 6 cut(s) 216, 221, 336, 379, 447, 713
BspANI GGCC 5 cut(s) 228, 254, 564, 593, 806
BspCNI CTCAG 2 cut(s) 258, 743
BspLI GGNNCC 6 cut(s) 523, 564, 594, 660, 765, 814
BspMAI CTGCAG 2 cut(s) 439, 781
BspMI ACCTGC 1 cut(s) 775
BspPI GGATC 1 cut(s) 256
BspT107I GGYRCC 2 cut(s) 763, 812
BsrI ACTGG 2 cut(s) 358, 716
BssECI CCNNGG 5 cut(s) 234, 441, 558, 588, 816
BssMI GATC 6 cut(s) 171, 261, 295, 315, 798, 825
BssSI CACGAG 1 cut(s) 792
BssT1I CCWWGG 2 cut(s) 441, 588
Bst2BI CACGAG 1 cut(s) 792
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 2 cut(s) 22, 32
BstBAI YACGTR 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 162, 571
BstDEI CTNAG 3 cut(s) 156, 266, 730
BstF5I GGATG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 752
BstHHI GCGC 2 cut(s) 751, 772
BstKTI GATC 6 cut(s) 174, 264, 298, 318, 801, 828
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 6 cut(s) 171, 261, 295, 315, 798, 825
BstMWI GCNNNNNNNGC 6 cut(s) 453, 570, 731, 776, 812, 841
BstSCI CCNGG 2 cut(s) 233, 815
BstSFI CTRYAG 2 cut(s) 435, 777
BstSLI GKGCMC 1 cut(s) 566
BstV1I GCAGC 4 cut(s) 195, 449, 791, 838
BstV2I GAAGAC 2 cut(s) 40, 234
BstX2I RGATCY 2 cut(s) 261, 315
BstYI RGATCY 2 cut(s) 261, 315
BsuRI GGCC 5 cut(s) 228, 254, 564, 593, 806
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 3 cut(s) 210, 466, 513
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 2 cut(s) 162, 571
CaiI CAGNNNCTG 1 cut(s) 722
CfoI GCGC 2 cut(s) 751, 772
Cfr13I GGNCC 4 cut(s) 522, 562, 563, 592
CseI GACGC 2 cut(s) 189, 259
Csp6I GTAC 1 cut(s) 744
CviAII CATG 3 cut(s) 544, 802, 829
CviQI GTAC 1 cut(s) 744
DdeI CTNAG 3 cut(s) 156, 266, 730
DpnI GATC 6 cut(s) 173, 263, 297, 317, 800, 827
DpnII GATC 6 cut(s) 171, 261, 295, 315, 798, 825
DraIII CACNNNGTG 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 2 cut(s) 252, 804
Eam1104I CTCTTC 2 cut(s) 22, 32
Eam1105I GACNNNNNGTC 1 cut(s) 547
EarI CTCTTC 2 cut(s) 22, 32
EciI GGCGGA 1 cut(s) 325
Eco130I CCWWGG 2 cut(s) 441, 588
Eco147I AGGCCT 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 497, 720
Eco72I CACGTG 1 cut(s) 277
Eco88I CYCGRG 2 cut(s) 107, 559
EcoO109I RGGNCCY 2 cut(s) 563, 592
EcoT14I CCWWGG 2 cut(s) 441, 588
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 2 cut(s) 441, 588
FaeI CATG 3 cut(s) 547, 805, 832
FaiI YATR 5 cut(s) 9, 251, 545, 803, 830
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FatI CATG 3 cut(s) 543, 801, 828
FauI CCCGC 3 cut(s) 214, 372, 440
FbaI TGATCA 1 cut(s) 825
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 5 cut(s) 184, 438, 713, 780, 852
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 5 cut(s) 184, 438, 713, 780, 852
GlaI GCGC 2 cut(s) 750, 771
GluI GCNGC 5 cut(s) 184, 438, 713, 780, 852
GsaI CCCAGC 1 cut(s) 493
GsuI CTGGAG 1 cut(s) 645
HaeII RGCGCY 1 cut(s) 752
HaeIII GGCC 5 cut(s) 228, 254, 564, 593, 806
HapII CCGG 2 cut(s) 234, 816
HgaI GACGC 2 cut(s) 189, 259
HhaI GCGC 2 cut(s) 751, 772
Hin1II CATG 3 cut(s) 547, 805, 832
Hin6I GCGC 2 cut(s) 749, 770
HinP1I GCGC 2 cut(s) 749, 770
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 5 cut(s) 239, 431, 548, 623, 728
HpaII CCGG 2 cut(s) 234, 816
HphI GGTGA 6 cut(s) 60, 88, 184, 418, 567, 835
Hpy166II GTNNAC 5 cut(s) 208, 274, 363, 409, 466
Hpy188I TCNGA 5 cut(s) 121, 247, 628, 652, 739
Hpy188III TCNNGA 6 cut(s) 109, 265, 299, 310, 539, 794
Hpy8I GTNNAC 5 cut(s) 208, 274, 363, 409, 466
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 4 cut(s) 97, 436, 610, 768
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 56, 437, 779
HpyF10VI GCNNNNNNNGC 6 cut(s) 453, 570, 731, 776, 812, 841
HpyF3I CTNAG 3 cut(s) 156, 266, 730
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 3 cut(s) 547, 805, 832
HspAI GCGC 2 cut(s) 749, 770
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 6 cut(s) 171, 261, 295, 315, 798, 825
LmnI GCTCC 5 cut(s) 108, 382, 643, 664, 670
Lsp1109I GCAGC 4 cut(s) 195, 449, 791, 838
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 66
MalI GATC 6 cut(s) 173, 263, 297, 317, 800, 827
MboI GATC 6 cut(s) 171, 261, 295, 315, 798, 825
MflI RGATCY 2 cut(s) 261, 315
MhlI GDGCHC 1 cut(s) 566
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 1 cut(s) 420
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 5 cut(s) 248, 440, 557, 617, 722
MmeI TCCRAC 3 cut(s) 144, 153, 264
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 317
MscI TGGCCA 1 cut(s) 254
MseI TTAA 3 cut(s) 474, 531, 856
MslI CAYNNNNRTG 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 2 cut(s) 234, 816
MspR9I CCNGG 2 cut(s) 235, 817
Mva1269I GAATGC 1 cut(s) 56
MwoI GCNNNNNNNGC 6 cut(s) 453, 570, 731, 776, 812, 841
NciI CCSGG 2 cut(s) 235, 817
NdeII GATC 6 cut(s) 171, 261, 295, 315, 798, 825
NlaIII CATG 3 cut(s) 547, 805, 832
NlaIV GGNNCC 6 cut(s) 523, 564, 594, 660, 765, 814
NmuCI GTSAC 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 107
PaqCI CACCTGC 1 cut(s) 775
PceI AGGCCT 1 cut(s) 228
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 317
PkrI GCNGC 5 cut(s) 185, 439, 714, 781, 853
PleI GAGTC 5 cut(s) 247, 439, 556, 617, 722
PmaCI CACGTG 1 cut(s) 277
PmlI CACGTG 1 cut(s) 277
PpsI GAGTC 5 cut(s) 247, 439, 556, 617, 722
Ppu21I YACGTR 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 531
PspCI CACGTG 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 489
PspN4I GGNNCC 6 cut(s) 523, 564, 594, 660, 765, 814
PspOMI GGGCCC 1 cut(s) 562
PspPI GGNCC 4 cut(s) 522, 562, 563, 592
PstI CTGCAG 2 cut(s) 439, 781
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 2 cut(s) 261, 315
RsaI GTAC 1 cut(s) 745
RsaNI GTAC 1 cut(s) 744
RseI CAYNNNNRTG 1 cut(s) 506
SalI GTCGAC 1 cut(s) 361
SaqAI TTAA 3 cut(s) 474, 531, 856
SatI GCNGC 5 cut(s) 184, 438, 713, 780, 852
Sau3AI GATC 6 cut(s) 171, 261, 295, 315, 798, 825
Sau96I GGNCC 4 cut(s) 522, 562, 563, 592
SchI GAGTC 5 cut(s) 248, 440, 557, 617, 722
ScrFI CCNGG 2 cut(s) 235, 817
SduI GDGCHC 1 cut(s) 566
SfcI CTRYAG 2 cut(s) 435, 777
Sfr274I CTCGAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 522
SlaI CTCGAG 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 2 cut(s) 107, 308
SmoI CTYRAG 2 cut(s) 107, 308
Sse9I AATT 1 cut(s) 420
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 6 cut(s) 216, 221, 336, 379, 447, 713
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 233, 815
StyI CCWWGG 2 cut(s) 441, 588
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 1 cut(s) 279
TaqI TCGA 4 cut(s) 108, 362, 429, 605
TasI AATT 1 cut(s) 420
TatI WGTACW 1 cut(s) 743
TauI GCSGC 1 cut(s) 715
Tru1I TTAA 3 cut(s) 474, 531, 856
Tru9I TTAA 3 cut(s) 474, 531, 856
TscAI CASTG 3 cut(s) 210, 466, 513
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 4 cut(s) 183, 437, 779, 851
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 382
TspGWI ACGGA 2 cut(s) 429, 657
TspRI CASTG 3 cut(s) 210, 466, 513
VpaK11BI GGWCC 1 cut(s) 522
VspI ATTAAT 1 cut(s) 531
XapI RAATTY 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.