RLG00000010348

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001500
Physical Location & Seq
Forward (+)
852210 .. 853037
828 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010348

Sequence Viewer

Length: 828 bp
ATGGACAGGAAAGCCTCTTCCATCATCTTCCTCGCTTTCTGTTTGGTCGCATCGGCCTCGGCCTTCGACATCCTGAAGCTCCTCCAGAAGGACTCCGAGCTGAGCGAATTCAGCAAGCTCCTCAAGGAAACCAAACTCGCCGATCAAATCAACGAACGCAAAAGCATCACAGTCCTCGCAGTTGGCAATGGTGGTGTCTCCGCCCTCTCCAATGTGTCCCCCGATGAGGTCAAGATGCTCTTGAGCGCCCACGTGGTGCTCGACTACTTCGATGAGCAGAAGCTAAAAGGAACGGTCAAAAAAGAGCCCACAACCGTGACCACAATGCTCCAAGCCACAGGCAAGGCTCAGCACCAACAGGGATTCATTAAAGTCGGCCTCGTCAAAGGAGAGATCGCTTTTGGGTCAGCAGTCAAGGGTGCTAACCTGGATTCCAAGCTTATTAAGTCTGTCACTTCTCAGCCTTTTGACATCTCTGTGCTTAAAGTCAGTTCTCTTATTGAGATTCCTGACCTTGGTTCTGCAAGCGCCCCCAAGAAGGCTCCATCACCATCTGAAGATGATGATGACACTGCTCCGGCACCAGCTGAAGATGATGACACTGCTGCTCCGGCACCATCTGAAGATGACGAAACAGACTTCTCATCGCCACCAGAGCCCGAAGACTCACCAACAGAAGCACCAGAGAATGCACCAGAGAAATCACCAGAGAAAGCACCAGAGAAAGAGAAACCATCTGCTACAGCTCCTGCTCCCTCGGCTGCTTCGCGTGTCGAGATGGCTCTTGGTGCCGGGCTCGTAATGGGTTTGGCTTCACTTTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

276

Amino Acids

28.77

Weight (kDa)

4.64

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 33 - 119 3.3e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 580, 613, 788
AccII CGCG 1 cut(s) 769
AciI CCGC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 4 cut(s) 95, 576, 609, 642
AcvI CACGTG 1 cut(s) 253
AdeI CACNNNGTG 1 cut(s) 256
AfiI CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
AjnI CCWGG 1 cut(s) 426
AleI CACNNNNGTG 1 cut(s) 314
AluBI AGCT 7 cut(s) 79, 100, 118, 283, 439, 587, 746
AluI AGCT 7 cut(s) 79, 100, 118, 283, 439, 587, 746
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 202
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 3 cut(s) 54, 60, 376
ApeKI GCWGC 2 cut(s) 605, 761
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 2 cut(s) 248, 530
AsuC2I CCSGG 1 cut(s) 793
AsuHPI GGTGA 3 cut(s) 540, 660, 696
BanI GGYRCC 3 cut(s) 580, 613, 788
BanII GRGCYC 3 cut(s) 309, 660, 798
BbrPI CACGTG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 592, 748
BccI CCATC 6 cut(s) 29, 553, 559, 625, 742, 772
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 1 cut(s) 428
BcnI CCSGG 1 cut(s) 793
BcoDI GTCTC 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 741
BfoI RGCGCY 2 cut(s) 249, 531
BisI GCNGC 2 cut(s) 606, 762
BlpI GCTNAGC 2 cut(s) 101, 348
BlsI GCNGC 2 cut(s) 607, 763
Bme1390I CCNGG 2 cut(s) 428, 793
BmiI GGNNCC 4 cut(s) 543, 582, 615, 790
BmrFI CCNGG 2 cut(s) 428, 793
BmsI GCATC 3 cut(s) 59, 174, 225
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 68
Bpu1102I GCTNAGC 2 cut(s) 101, 348
BpuEI CTTGAG 2 cut(s) 107, 262
BpuMI CCSGG 1 cut(s) 793
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 57, 514, 756
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 3 cut(s) 57, 514, 756
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 3 cut(s) 92, 362, 473
BseRI GAGGAG 2 cut(s) 71, 110
BseXI GCAGC 2 cut(s) 592, 748
Bsh1236I CGCG 1 cut(s) 769
BshFI GGCC 3 cut(s) 56, 62, 378
BshNI GGYRCC 3 cut(s) 580, 613, 788
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 3 cut(s) 578, 611, 792
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 3 cut(s) 56, 62, 378
Bsp1286I GDGCHC 4 cut(s) 261, 309, 660, 798
Bsp143I GATC 2 cut(s) 142, 393
Bsp1720I GCTNAGC 2 cut(s) 101, 348
BspACI CCGC 1 cut(s) 201
BspANI GGCC 3 cut(s) 56, 62, 378
BspCNI CTCAG 3 cut(s) 93, 361, 472
BspFNI CGCG 1 cut(s) 769
BspLI GGNNCC 4 cut(s) 543, 582, 615, 790
BspT107I GGYRCC 3 cut(s) 580, 613, 788
BsrDI GCAATG 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 57, 514, 756
BssMI GATC 2 cut(s) 142, 393
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 172, 295, 316
Bst6I CTCTTC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 116, 526
BstDEI CTNAG 3 cut(s) 101, 348, 459
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 769
BstH2I RGCGCY 2 cut(s) 249, 531
BstHHI GCGC 2 cut(s) 248, 530
BstKTI GATC 2 cut(s) 145, 396
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 142, 393
BstMWI GCNNNNNNNGC 5 cut(s) 111, 611, 655, 758, 788
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 426, 791
BstSFI CTRYAG 1 cut(s) 741
BstUI CGCG 1 cut(s) 769
BstV1I GCAGC 2 cut(s) 592, 748
BstV2I GAAGAC 1 cut(s) 669
BsuRI GGCC 3 cut(s) 56, 62, 378
BtgZI GCGATG 1 cut(s) 630
BtsCI GGATG 1 cut(s) 69
BtsI GCAGTG 2 cut(s) 570, 600
BtsIMutI CAGTG 2 cut(s) 570, 600
Cac8I GCNNGC 2 cut(s) 116, 526
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 2 cut(s) 248, 530
DdeI CTNAG 3 cut(s) 101, 348, 459
DpnI GATC 2 cut(s) 144, 395
DpnII GATC 2 cut(s) 142, 393
DraIII CACNNNGTG 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 3 cut(s) 309, 660, 798
Eco57I CTGAAG 4 cut(s) 95, 576, 609, 642
Eco72I CACGTG 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 514
EcoT38I GRGCYC 3 cut(s) 309, 660, 798
ErhI CCWWGG 1 cut(s) 514
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 606, 762
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 3 cut(s) 309, 660, 798
Fsp4HI GCNGC 2 cut(s) 606, 762
GlaI GCGC 2 cut(s) 247, 529
GluI GCNGC 2 cut(s) 606, 762
GsuI CTGGAG 1 cut(s) 68
HaeII RGCGCY 2 cut(s) 249, 531
HaeIII GGCC 3 cut(s) 56, 62, 378
HapII CCGG 3 cut(s) 578, 611, 792
HhaI GCGC 2 cut(s) 248, 530
Hin6I GCGC 2 cut(s) 246, 528
HinP1I GCGC 2 cut(s) 246, 528
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 5 cut(s) 92, 363, 431, 505, 665
HpaII CCGG 3 cut(s) 578, 611, 792
HphI GGTGA 3 cut(s) 540, 660, 696
Hpy188I TCNGA 3 cut(s) 97, 556, 622
Hpy188III TCNNGA 6 cut(s) 73, 85, 232, 241, 509, 775
HpyAV CCTTC 3 cut(s) 73, 82, 532
HpyCH4III ACNGT 3 cut(s) 172, 295, 316
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 524, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 611, 655, 758, 788
HpyF3I CTNAG 3 cut(s) 101, 348, 459
HpySE526I ACGT 1 cut(s) 252
HspAI GCGC 2 cut(s) 246, 528
Kzo9I GATC 2 cut(s) 142, 393
LmnI GCTCC 8 cut(s) 84, 123, 333, 547, 580, 613, 751, 757
Lsp1109I GCAGC 2 cut(s) 592, 748
LweI GCATC 3 cut(s) 59, 174, 225
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 316, 451
MalI GATC 2 cut(s) 144, 395
MboI GATC 2 cut(s) 142, 393
MboII GAAGA 6 cut(s) 9, 19, 569, 602, 635, 674
MhlI GDGCHC 4 cut(s) 261, 309, 660, 798
MluCI AATT 1 cut(s) 107
MlyI GAGTC 2 cut(s) 86, 659
MseI TTAA 4 cut(s) 369, 444, 483, 826
MslI CAYNNNNRTG 2 cut(s) 314, 476
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 3 cut(s) 578, 611, 792
MspR9I CCNGG 2 cut(s) 428, 793
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 769
MwoI GCNNNNNNNGC 5 cut(s) 111, 611, 655, 758, 788
NciI CCSGG 1 cut(s) 793
NdeII GATC 2 cut(s) 142, 393
NlaIV GGNNCC 4 cut(s) 543, 582, 615, 790
NmeAIII GCCGAG 2 cut(s) 38, 737
NmuCI GTSAC 2 cut(s) 316, 451
OliI CACNNNNGTG 1 cut(s) 314
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 267
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 3 cut(s) 363, 431, 505
PkrI GCNGC 2 cut(s) 607, 763
PleI GAGTC 2 cut(s) 86, 659
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 2 cut(s) 86, 659
Ppu21I YACGTR 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 426
PspCI CACGTG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 4 cut(s) 543, 582, 615, 790
PstNI CAGNNNCTG 1 cut(s) 749
PvuII CAGCTG 1 cut(s) 587
RseI CAYNNNNRTG 2 cut(s) 314, 476
SaqAI TTAA 4 cut(s) 369, 444, 483, 826
SatI GCNGC 2 cut(s) 606, 762
Sau3AI GATC 2 cut(s) 142, 393
SchI GAGTC 2 cut(s) 86, 659
ScrFI CCNGG 2 cut(s) 428, 793
SduI GDGCHC 4 cut(s) 261, 309, 660, 798
SfaNI GCATC 3 cut(s) 59, 174, 225
SfcI CTRYAG 1 cut(s) 741
SmiMI CAYNNNNRTG 2 cut(s) 314, 476
SmlI CTYRAG 2 cut(s) 122, 241
SmoI CTYRAG 2 cut(s) 122, 241
Sse9I AATT 1 cut(s) 107
SsiI CCGC 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 426, 791
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 3 cut(s) 172, 295, 316
TaiI ACGT 1 cut(s) 255
TaqI TCGA 4 cut(s) 66, 261, 270, 774
TasI AATT 1 cut(s) 107
TfiI GAWTC 3 cut(s) 363, 431, 505
Tru1I TTAA 4 cut(s) 369, 444, 483, 826
Tru9I TTAA 4 cut(s) 369, 444, 483, 826
TscAI CASTG 2 cut(s) 577, 607
TseFI GTSAC 2 cut(s) 316, 451
TseI GCWGC 2 cut(s) 605, 761
Tsp45I GTSAC 2 cut(s) 316, 451
TspDTI ATGAA 1 cut(s) 355
TspRI CASTG 2 cut(s) 577, 607
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.