pycom15g09970

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001500
Physical Location & Seq
Reverse (-)
6512976 .. 6513851
876 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g09970.1

Sequence Viewer

Length: 876 bp
ATGGAACATGGCATCCTCTTCTCCTCCTTCTTCCTTGCCCTCTTCCTCCTCTTCTCCACCTCGTCAGCCTTCAACATCACCAAGATCTTAGAGAAGCAGTCGGACTTCTCCAACTTCAACAGCCTCCTCTCCGAGACAAAGCTAGCTAACGAGATCAACAAACGTAAAACCATCACCGTCCTTGCCGTGGACAATGGCGGCGTTGGAGGCCTCTCCGGAGGATCCTCTGACCTAACCAAGAAAATCCTGAGCGTCCACGTTGTCTTGGATTACTACGACACGGACAAGCTTAAAAAGCTCTTCAAATCAAACAAGTCTGTAACTCTCACCACAATGTTCCAATCAACCGGTCAGGCTCGCCACCAACAAGGTTTCATCACCGTTTCGGTGAAAGACAACCATATCTCATTTGCATCCGCATACAAGGGCAACAATAATGGCGGCAATCACGTCAACCTTGTTAAGTCGGTTGTTTCCCAACCCTACAACATTTCAGTTCTCCAAGTCGGGTCCATCATCGACGTGCCTGACATCGAGAACACCGACTCTTCCCCCGCCCAATCACCAAAGTCTGCCAAGGCTCCCAGCCCCTCGAAGTCCAAGAAAGGAGGTGATGACGGGGCTCCCAGTCCGTCGGAAGACGATGAGTCATCATCTGACAAGGCTCCAGCCCCATCAAAGAAAAAGCATGACAAAGACGACAAAGGCGAAAAATCCTCGCCACCAAAGCCATCTGATGATGACTCGTCGTCAGATAGTGCTCCAGCACCTGCACCCTCGTCACCTGCTCCATCTGCTGCCTCACGCACTCGTGGGATCGTGGCTGTTGGTGCCGCGGTTCTGTTCATGGGTTTGGCTTCACTTTTGGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

292

Amino Acids

30.53

Weight (kDa)

8.53

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 778, 793
Acc36I ACCTGC 2 cut(s) 778, 793
AccB1I GGYRCC 1 cut(s) 830
AccII CGCG 1 cut(s) 836
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 6 cut(s) 198, 417, 441, 555, 834, 836
AclWI GGATC 3 cut(s) 216, 229, 824
AfiI CCNNNNNNNGG 1 cut(s) 187
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 3 cut(s) 73, 118, 304
AhdI GACNNNNNGTC 2 cut(s) 646, 748
AjiI CACGTC 2 cut(s) 451, 523
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 5 cut(s) 142, 146, 289, 298, 872
AluI AGCT 5 cut(s) 142, 146, 289, 298, 872
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 3 cut(s) 216, 229, 824
AlwNI CAGNNNCTG 1 cut(s) 770
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 797, 869
AsiGI ACCGGT 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 510
AsuHPI GGTGA 8 cut(s) 70, 166, 319, 370, 400, 555, 623, 774
AsuNHI GCTAGC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 510
BamHI GGATCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 830
BanII GRGCYC 1 cut(s) 625
BauI CACGAG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 763
BbvI GCAGC 1 cut(s) 784
BccI CCATC 5 cut(s) 179, 521, 682, 739, 799
BceAI ACGGC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 143
BfuAI ACCTGC 2 cut(s) 778, 793
BglII AGATCT 1 cut(s) 84
BisI GCNGC 5 cut(s) 199, 442, 798, 834, 870
BlsI GCNGC 5 cut(s) 200, 443, 799, 835, 871
Bme18I GGWCC 1 cut(s) 510
BmeRI GACNNNNNGTC 2 cut(s) 646, 748
BmgBI CACGTC 2 cut(s) 451, 523
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 6 cut(s) 223, 511, 582, 624, 666, 832
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 2 cut(s) 21, 422
BmtI GCTAGC 1 cut(s) 146
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 2 cut(s) 651, 747
Bpu10I CCTNAGC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 186, 576, 834
BsaWI WCCGGW 2 cut(s) 215, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 627
BseAI TCCGGA 1 cut(s) 215
BseDI CCNNGG 3 cut(s) 186, 576, 834
BseGI GGATG 2 cut(s) 12, 413
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 627
BseRI GAGGAG 3 cut(s) 13, 38, 116
BseXI GCAGC 1 cut(s) 784
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 756
Bsh1236I CGCG 1 cut(s) 836
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 830
BshTI ACCGGT 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 763
BsiSI CCGG 2 cut(s) 216, 348
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 625, 763
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 4 cut(s) 84, 153, 221, 816
BspACI CCGC 6 cut(s) 198, 417, 441, 555, 834, 836
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 1 cut(s) 836
BspLI GGNNCC 6 cut(s) 223, 511, 582, 624, 666, 832
BspMI ACCTGC 2 cut(s) 778, 793
BspOI GCTAGC 1 cut(s) 146
BspPI GGATC 3 cut(s) 216, 229, 824
BspQI GCTCTTC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 830
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 627
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 186, 576, 834
BssMI GATC 4 cut(s) 84, 153, 221, 816
BssSI CACGAG 1 cut(s) 810
BssT1I CCWWGG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 810
Bst4CI ACNGT 2 cut(s) 178, 382
Bst6I CTCTTC 5 cut(s) 23, 47, 56, 305, 553
BstC8I GCNNGC 2 cut(s) 144, 358
BstDEI CTNAG 2 cut(s) 88, 248
BstDSI CCRYGG 2 cut(s) 186, 834
BstF5I GGATG 2 cut(s) 12, 413
BstFNI CGCG 1 cut(s) 836
BstKTI GATC 4 cut(s) 87, 156, 224, 819
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 4 cut(s) 84, 153, 221, 816
BstMWI GCNNNNNNNGC 5 cut(s) 207, 295, 727, 794, 830
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 1 cut(s) 784
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 2 cut(s) 84, 221
BstYI RGATCY 2 cut(s) 84, 221
BsuRI GGCC 1 cut(s) 210
BtgI CCRYGG 2 cut(s) 186, 834
BtrI CACGTC 2 cut(s) 451, 523
BtsCI GGATG 2 cut(s) 12, 413
BveI ACCTGC 2 cut(s) 778, 793
Cac8I GCNNGC 2 cut(s) 144, 358
CaiI CAGNNNCTG 1 cut(s) 770
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 510
Cfr42I CCGCGG 1 cut(s) 837
CseI GACGC 1 cut(s) 241
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 3 cut(s) 8, 689, 847
DdeI CTNAG 2 cut(s) 88, 248
DpnI GATC 4 cut(s) 86, 155, 223, 818
DpnII GATC 4 cut(s) 84, 153, 221, 816
DriI GACNNNNNGTC 2 cut(s) 646, 748
Eam1104I CTCTTC 5 cut(s) 23, 47, 56, 305, 553
Eam1105I GACNNNNNGTC 2 cut(s) 646, 748
EarI CTCTTC 5 cut(s) 23, 47, 56, 305, 553
Eco130I CCWWGG 1 cut(s) 576
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 3 cut(s) 11, 692, 850
FaiI YATR 5 cut(s) 9, 402, 421, 690, 848
FatI CATG 3 cut(s) 7, 688, 846
FauI CCCGC 1 cut(s) 562
Fnu4HI GCNGC 5 cut(s) 199, 442, 798, 834, 870
FokI GGATG 1 cut(s) 400
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 5 cut(s) 199, 442, 798, 834, 870
FspBI CTAG 1 cut(s) 143
GluI GCNGC 5 cut(s) 199, 442, 798, 834, 870
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 2 cut(s) 651, 747
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 216, 348
HgaI GACGC 1 cut(s) 241
Hin1II CATG 3 cut(s) 11, 692, 850
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 3 cut(s) 545, 647, 743
HpaII CCGG 2 cut(s) 216, 348
HphI GGTGA 8 cut(s) 70, 166, 319, 370, 400, 555, 623, 774
Hpy166II GTNNAC 3 cut(s) 190, 256, 454
Hpy188I TCNGA 7 cut(s) 103, 133, 229, 637, 658, 736, 754
Hpy188III TCNNGA 3 cut(s) 216, 247, 535
Hpy8I GTNNAC 3 cut(s) 190, 256, 454
Hpy99I CGWCG 3 cut(s) 524, 637, 751
HpyAV CCTTC 2 cut(s) 37, 79
HpyCH4III ACNGT 2 cut(s) 178, 382
HpyCH4IV ACGT 4 cut(s) 163, 258, 450, 522
HpyCH4V TGCA 2 cut(s) 413, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 295, 727, 794, 830
HpyF3I CTNAG 2 cut(s) 88, 248
HpySE526I ACGT 4 cut(s) 163, 258, 450, 522
Hsp92II CATG 3 cut(s) 11, 692, 850
Kpn2I TCCGGA 1 cut(s) 215
KspI CCGCGG 1 cut(s) 837
Kzo9I GATC 4 cut(s) 84, 153, 221, 816
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 5 cut(s) 586, 628, 670, 766, 793
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 2 cut(s) 21, 422
MaeI CTAG 1 cut(s) 143
MaeII ACGT 4 cut(s) 163, 258, 450, 522
MaeIII GTNAC 2 cut(s) 319, 780
MalI GATC 4 cut(s) 86, 155, 223, 818
MboI GATC 4 cut(s) 84, 153, 221, 816
MboII GAAGA 7 cut(s) 10, 22, 34, 43, 292, 540, 650
MflI RGATCY 2 cut(s) 84, 221
MhlI GDGCHC 2 cut(s) 625, 763
MlyI GAGTC 3 cut(s) 539, 656, 737
MmeI TCCRAC 4 cut(s) 81, 135, 184, 615
MroI TCCGGA 1 cut(s) 215
MseI TTAA 3 cut(s) 291, 462, 874
MslI CAYNNNNRTG 2 cut(s) 332, 521
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 2 cut(s) 216, 348
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 5 cut(s) 207, 295, 727, 794, 830
NdeII GATC 4 cut(s) 84, 153, 221, 816
NheI GCTAGC 1 cut(s) 142
NlaIII CATG 3 cut(s) 11, 692, 850
NlaIV GGNNCC 6 cut(s) 223, 511, 582, 624, 666, 832
NmuCI GTSAC 1 cut(s) 780
PaqCI CACCTGC 2 cut(s) 778, 793
PceI AGGCCT 1 cut(s) 210
PciSI GCTCTTC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 2 cut(s) 540, 705
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 5 cut(s) 200, 443, 799, 835, 871
PleI GAGTC 3 cut(s) 539, 655, 737
PpsI GAGTC 3 cut(s) 539, 655, 737
PspFI CCCAGC 1 cut(s) 584
PspN4I GGNNCC 6 cut(s) 223, 511, 582, 624, 666, 832
PspPI GGNCC 1 cut(s) 510
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 2 cut(s) 84, 221
RseI CAYNNNNRTG 2 cut(s) 332, 521
SacII CCGCGG 1 cut(s) 837
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 3 cut(s) 291, 462, 874
SatI GCNGC 5 cut(s) 199, 442, 798, 834, 870
Sau3AI GATC 4 cut(s) 84, 153, 221, 816
Sau96I GGNCC 1 cut(s) 510
SchI GAGTC 3 cut(s) 539, 656, 737
SduI GDGCHC 2 cut(s) 625, 763
SfaNI GCATC 2 cut(s) 21, 422
Sfr303I CCGCGG 1 cut(s) 837
SgrBI CCGCGG 1 cut(s) 837
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 2 cut(s) 332, 521
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 6 cut(s) 198, 417, 441, 555, 834, 836
SspMI CTAG 1 cut(s) 143
StuI AGGCCT 1 cut(s) 210
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 178, 382
TaiI ACGT 4 cut(s) 166, 261, 453, 525
TaqI TCGA 3 cut(s) 519, 534, 593
TauI GCSGC 3 cut(s) 201, 444, 836
Tru1I TTAA 3 cut(s) 291, 462, 874
Tru9I TTAA 3 cut(s) 291, 462, 874
TseFI GTSAC 1 cut(s) 780
TseI GCWGC 2 cut(s) 797, 869
Tsp45I GTSAC 1 cut(s) 780
TspDTI ATGAA 2 cut(s) 364, 835
TspGWI ACGGA 2 cut(s) 296, 621
VpaK11BI GGWCC 1 cut(s) 510
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.