Rh6DG512600

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001500
Physical Location & Seq
Reverse (-)
66542430 .. 66543624
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG512600.1

Sequence Viewer

Length: 828 bp
ATGGACAGGAAAGCCTCTTCCATCATCTTCCTCGCTTTCTGTTTGGTTGCATCGGCCTCGGCCTTCGACATCCTGAAGCTCCTCCAGAAGGACTCCGAGCTAAGCGAGTTCAGCAAGCTCCTTAAGGAAACCAAACTCGCCGATGAAATCAACAAACGCAAATCCATCACAGTCCTCGCAGTTGGCAATGGTGGTGTCTCCGCCCTCTCCAATGTGTCCCCCGATGAGGTCAAGATGCTCTTGAGCGCCCACGTGGTGCTCGACTACTTCGATGAGCAGAAGCTAAAAGGAACGGTCAAAAAAGAGCCCATAACCGTCACCACAATGCTCCAAGCCACAGGCAAGGCTCAGCACCAACAGGGATTCATTAAACTCGGCCTCGTCAAAGGAGAGATCGCTTTTGGGTCAGCAGTCAAGGGTGCTAACCTGGATTCCAAGCTTATTAAGTCTGTCACTTCTCAGCCTTCTGACATCTCTGTGCTTAAAGTCAGTTCTCTTATTGAGATTCCTGACCTTGGTTCTGCAAGCGCCCCCAAGAAGGCTCCATCACCATCTGAAGATGATGACACTGCTGCTCCGGCACCATCTGAAGATGATGACACTGCTGCTCCTGCACCATCTGAAGATGACGAAACAGACTTCTCATCGCCACCAGAGCCCGAAGACTCACCAACAGAAGCACCAGAGAATGCACCAGAGAAATCACCAGAGAAAGCACCAGAGAAAGAGAAACCATCTGCTACTGCTCCTGCTCCCTCGGCTGCTTCGCGTGTCGAGATGGCTCTTGGTGCCGGGCTCGTAATGGGTTTGGCTTCACTTTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

275

Amino Acids

28.71

Weight (kDa)

4.73

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 580, 788
AccII CGCG 1 cut(s) 769
AciI CCGC 1 cut(s) 201
AcuI CTGAAG 4 cut(s) 95, 576, 609, 642
AcvI CACGTG 1 cut(s) 253
AdeI CACNNNGTG 1 cut(s) 256
AfiI CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
AflII CTTAAG 1 cut(s) 122
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 5 cut(s) 79, 100, 118, 283, 439
AluI AGCT 5 cut(s) 79, 100, 118, 283, 439
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 202
AoxI GGCC 3 cut(s) 54, 60, 376
ApeKI GCWGC 3 cut(s) 572, 605, 761
AspLEI GCGC 2 cut(s) 248, 530
AsuC2I CCSGG 1 cut(s) 793
AsuHPI GGTGA 4 cut(s) 310, 540, 660, 696
BanI GGYRCC 2 cut(s) 580, 788
BanII GRGCYC 3 cut(s) 309, 660, 798
BbrPI CACGTG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 3 cut(s) 559, 592, 748
BccI CCATC 8 cut(s) 29, 173, 553, 559, 592, 625, 742, 772
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 1 cut(s) 428
BcnI CCSGG 1 cut(s) 793
BcoDI GTCTC 1 cut(s) 202
BfoI RGCGCY 2 cut(s) 249, 531
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 3 cut(s) 573, 606, 762
BlpI GCTNAGC 2 cut(s) 101, 348
BlsI GCNGC 3 cut(s) 574, 607, 763
Bme1390I CCNGG 2 cut(s) 428, 793
BmiI GGNNCC 3 cut(s) 543, 582, 790
BmrFI CCNGG 2 cut(s) 428, 793
BmsI GCATC 2 cut(s) 59, 225
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 68
Bpu1102I GCTNAGC 2 cut(s) 101, 348
BpuEI CTTGAG 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 793
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 57, 514, 756
BsaXI ACNNNNNCTCC 4 cut(s) 559, 589, 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 3 cut(s) 57, 514, 756
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 362, 473
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 3 cut(s) 559, 592, 748
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 1 cut(s) 769
BshFI GGCC 3 cut(s) 56, 62, 378
BshNI GGYRCC 2 cut(s) 580, 788
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 2 cut(s) 578, 792
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 88, 226, 515, 538
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 3 cut(s) 56, 62, 378
Bsp1286I GDGCHC 4 cut(s) 261, 309, 660, 798
Bsp143I GATC 1 cut(s) 393
Bsp1720I GCTNAGC 2 cut(s) 101, 348
BspACI CCGC 1 cut(s) 201
BspANI GGCC 3 cut(s) 56, 62, 378
BspCNI CTCAG 2 cut(s) 361, 472
BspFNI CGCG 1 cut(s) 769
BspLI GGNNCC 3 cut(s) 543, 582, 790
BspT107I GGYRCC 2 cut(s) 580, 788
BspTI CTTAAG 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 57, 514, 756
BssMI GATC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 172, 295, 316
Bst6I CTCTTC 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 116, 526
BstDEI CTNAG 3 cut(s) 101, 348, 459
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 769
BstH2I RGCGCY 2 cut(s) 249, 531
BstHHI GCGC 2 cut(s) 248, 530
BstKTI GATC 1 cut(s) 396
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 6 cut(s) 111, 578, 611, 655, 758, 788
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 426, 791
BstUI CGCG 1 cut(s) 769
BstV1I GCAGC 3 cut(s) 559, 592, 748
BstV2I GAAGAC 1 cut(s) 669
BsuRI GGCC 3 cut(s) 56, 62, 378
BtgZI GCGATG 1 cut(s) 630
BtsCI GGATG 1 cut(s) 69
BtsI GCAGTG 2 cut(s) 567, 600
BtsIMutI CAGTG 2 cut(s) 567, 600
Cac8I GCNNGC 2 cut(s) 116, 526
CfoI GCGC 2 cut(s) 248, 530
DdeI CTNAG 3 cut(s) 101, 348, 459
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
DraIII CACNNNGTG 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 3 cut(s) 309, 660, 798
Eco57I CTGAAG 4 cut(s) 95, 576, 609, 642
Eco72I CACGTG 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 514
EcoT38I GRGCYC 3 cut(s) 309, 660, 798
ErhI CCWWGG 1 cut(s) 514
FaiI YATR 1 cut(s) 311
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 573, 606, 762
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 3 cut(s) 309, 660, 798
Fsp4HI GCNGC 3 cut(s) 573, 606, 762
GlaI GCGC 2 cut(s) 247, 529
GluI GCNGC 3 cut(s) 573, 606, 762
GsuI CTGGAG 1 cut(s) 68
HaeII RGCGCY 2 cut(s) 249, 531
HaeIII GGCC 3 cut(s) 56, 62, 378
HapII CCGG 2 cut(s) 578, 792
HhaI GCGC 2 cut(s) 248, 530
Hin6I GCGC 2 cut(s) 246, 528
HinP1I GCGC 2 cut(s) 246, 528
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 5 cut(s) 92, 363, 431, 505, 665
HpaII CCGG 2 cut(s) 578, 792
HphI GGTGA 4 cut(s) 310, 540, 660, 696
Hpy188I TCNGA 5 cut(s) 97, 469, 556, 589, 622
Hpy188III TCNNGA 6 cut(s) 73, 85, 232, 241, 509, 775
HpyAV CCTTC 4 cut(s) 73, 82, 474, 532
HpyCH4III ACNGT 3 cut(s) 172, 295, 316
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 4 cut(s) 50, 524, 614, 692
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 578, 611, 655, 758, 788
HpyF3I CTNAG 3 cut(s) 101, 348, 459
HpySE526I ACGT 1 cut(s) 252
HspAI GCGC 2 cut(s) 246, 528
Kzo9I GATC 1 cut(s) 393
LmnI GCTCC 8 cut(s) 84, 123, 333, 547, 580, 613, 751, 757
Lsp1109I GCAGC 3 cut(s) 559, 592, 748
LweI GCATC 2 cut(s) 59, 225
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 316, 451
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 6 cut(s) 9, 19, 569, 602, 635, 674
MhlI GDGCHC 4 cut(s) 261, 309, 660, 798
MlyI GAGTC 2 cut(s) 86, 659
MnlI CCTC 9 cut(s) 25, 41, 67, 92, 185, 215, 220, 389, 766
MseI TTAA 5 cut(s) 123, 369, 444, 483, 826
MslI CAYNNNNRTG 2 cut(s) 323, 476
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 2 cut(s) 578, 792
MspR9I CCNGG 2 cut(s) 428, 793
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 769
MwoI GCNNNNNNNGC 6 cut(s) 111, 578, 611, 655, 758, 788
NciI CCSGG 1 cut(s) 793
NdeII GATC 1 cut(s) 393
NlaIV GGNNCC 3 cut(s) 543, 582, 790
NmeAIII GCCGAG 3 cut(s) 38, 354, 737
NmuCI GTSAC 2 cut(s) 316, 451
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 267
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 3 cut(s) 363, 431, 505
PkrI GCNGC 3 cut(s) 574, 607, 763
PleI GAGTC 2 cut(s) 86, 659
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 2 cut(s) 86, 659
Ppu21I YACGTR 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 426
PspCI CACGTG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 3 cut(s) 543, 582, 790
RseI CAYNNNNRTG 2 cut(s) 323, 476
SaqAI TTAA 5 cut(s) 123, 369, 444, 483, 826
SatI GCNGC 3 cut(s) 573, 606, 762
Sau3AI GATC 1 cut(s) 393
SchI GAGTC 2 cut(s) 86, 659
ScrFI CCNGG 2 cut(s) 428, 793
SduI GDGCHC 4 cut(s) 261, 309, 660, 798
SetI ASST 9 cut(s) 81, 102, 120, 231, 255, 285, 429, 441, 516
SfaNI GCATC 2 cut(s) 59, 225
SmiMI CAYNNNNRTG 2 cut(s) 323, 476
SmlI CTYRAG 2 cut(s) 122, 241
SmoI CTYRAG 2 cut(s) 122, 241
SsiI CCGC 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 426, 791
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 3 cut(s) 172, 295, 316
TaiI ACGT 1 cut(s) 255
TaqI TCGA 4 cut(s) 66, 261, 270, 774
TfiI GAWTC 3 cut(s) 363, 431, 505
Tru1I TTAA 5 cut(s) 123, 369, 444, 483, 826
Tru9I TTAA 5 cut(s) 123, 369, 444, 483, 826
TscAI CASTG 2 cut(s) 574, 607
TseFI GTSAC 2 cut(s) 316, 451
TseI GCWGC 3 cut(s) 572, 605, 761
Tsp45I GTSAC 2 cut(s) 316, 451
TspDTI ATGAA 2 cut(s) 159, 355
TspRI CASTG 2 cut(s) 574, 607
Vha464I CTTAAG 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.