pycom08g11330

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0001500
Physical Location & Seq
Forward (+)
9594027 .. 9595460
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g11330.3

Sequence Viewer

Length: 1227 bp
ATGAATGACGTTTGTTATGCGCGTGATTTCTATGTGATCGTTTGGTACTTTTTCTTTCTTCTTTCCATAGAAATTCGCTCCCAGCCTTTAGGATCCACCAACATCCAAATTTTCTGTGTAATTATAGCAAATCAATCTGTATATAACTCCCCCAAATCCCCACTTGAGAAACCAGAGCTTTGGAAGATAAATAAAGCATTGCTTTCAAAGCAAGAAATAAGGCAAAGCAAGATAAAAAATAAAGATGGAGAACACCAAAGCCTCTGTTATCCTCTGCCTTGCCCTCTTCCTTGTCTTCTCTTCGGCCTCGCAGCTTCACCAACTACCTCAAGGAGACCAAGCTCGGTGACGAGATCGATCAACAAGCGCAGCACCATCACAGTGTTGGCAGTGGACAACGGGGGCATGTCAAGCATCTCCGGAAAATCCCAAGATGTGATCAAGAAGATCCTGAGCGCACACGTTGTTTTGGATTACTTCGACCAGAAGAAACTGACCAGTCTGGCTGGTTCCAGCAAGGAATCAACCCTAACCACAATGCTCCAGTCCTCTGGCCAGGCCAAGGACCAGCAAGGGTTCATCATTGTCGGTAAGAGCGACGGAGAAATTGCTTTCGGGTCAGCTGTCAAGGGCGGCAAGCTCAACGCCAAGCTCGTGAAAGCCGTTGTCTCTCAGCCCTACAACATTTCAGTTCTTCAAATCTCAAATGCGATTGAAATTCCCGACATTTCTGCTGCCTCTAGCCCTGCCGGCTCGCCAAAGTCCTCCGCATCATCAGCTTCTTCTCCATCAAGCAAATCATCCTCTGATGCTCCCAGTCCCTCTGATGACAGTGCCCCAAGCCAATCACCCAAGTCATCAAAGGCACCCTCACCGTCGGATGACGTTTCATCCCCACCGGTTTCTGGTGATGCTACACCTTCATCCTCACCATCTAGTGATGGACCAACCGGATCGATCAAGCTCTGCACCTTCACCGTCTGCTGCTTCACGCGCCGAGATGGCTTTTGGCGCCGGAGTGGTGATCATGGGTTTGGCTTCCCTTTTGGTTTAAACTTAAAGGGTACACGGTTAGTGGTTTTGTGTGGTAAATGGATAGAACATGTAAGCAACCTTTGTTTTTATTTAGAAATGCATCAGATACCCTTTAAGTACTTTCTTTTTCTTGTGATTTTTCTTTTTCTGCTTTCTTCTTCACTGAGTTTGCTTGCAATGCAAGTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

409

Amino Acids

43.91

Weight (kDa)

9.18

Isoelectric Point (pI)

72.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 865, 1011
AccII CGCG 2 cut(s) 22, 994
AccIII TCCGGA 1 cut(s) 419
AciI CCGC 2 cut(s) 633, 768
AclWI GGATC 4 cut(s) 87, 100, 442, 961
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 3 cut(s) 72, 108, 717
AcyI GRCGYC 1 cut(s) 1012
AfaI GTAC 3 cut(s) 47, 1066, 1154
AfiI CCNNNNNNNGG 2 cut(s) 562, 905
AflIII ACRYGT 2 cut(s) 460, 1102
AgeI ACCGGT 1 cut(s) 898
AgsI TTSAA 3 cut(s) 207, 698, 716
AjnI CCWGG 1 cut(s) 555
AluBI AGCT 8 cut(s) 178, 314, 342, 623, 640, 652, 779, 964
AluI AGCT 8 cut(s) 178, 314, 342, 623, 640, 652, 779, 964
Alw26I GTCTC 2 cut(s) 328, 673
AlwI GGATC 4 cut(s) 87, 100, 442, 961
Aor13HI TCCGGA 1 cut(s) 419
AoxI GGCC 3 cut(s) 304, 553, 558
ApeKI GCWGC 4 cut(s) 311, 369, 734, 984
ApoI RAATTY 3 cut(s) 72, 108, 717
AsiGI ACCGGT 1 cut(s) 898
AspLEI GCGC 5 cut(s) 22, 369, 458, 996, 1014
AspS9I GGNCC 2 cut(s) 565, 944
AsuHPI GGTGA 8 cut(s) 309, 358, 840, 864, 920, 921, 967, 1034
AvaII GGWCC 2 cut(s) 565, 944
BaeGI GKGCMC 1 cut(s) 838
BalI TGGCCA 1 cut(s) 555
BamHI GGATCC 1 cut(s) 92
BanI GGYRCC 2 cut(s) 865, 1011
BauI CACGAG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 323, 381, 721, 971
BccI CCATC 6 cut(s) 239, 383, 796, 935, 940, 995
BceAI ACGGC 1 cut(s) 647
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 1 cut(s) 557
BclI TGATCA 2 cut(s) 438, 1024
BcoDI GTCTC 2 cut(s) 328, 673
BfaI CTAG 2 cut(s) 741, 936
BfoI RGCGCY 1 cut(s) 1015
BglI GCCNNNNNGGC 2 cut(s) 750, 1002
BisI GCNGC 5 cut(s) 312, 370, 634, 735, 985
BlsI GCNGC 5 cut(s) 313, 371, 635, 736, 986
BmcAI AGTACT 1 cut(s) 1154
Bme1390I CCNGG 1 cut(s) 557
Bme18I GGWCC 2 cut(s) 565, 944
BmgT120I GGNCC 2 cut(s) 565, 944
BmiI GGNNCC 4 cut(s) 94, 511, 867, 1013
BmrFI CCNGG 1 cut(s) 557
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 5 cut(s) 423, 779, 799, 901, 1144
BmuI ACTGGG 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 452
BpuEI CTTGAG 2 cut(s) 185, 313
Bsa29I ATCGAT 2 cut(s) 356, 956
BsaHI GRCGYC 1 cut(s) 1012
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 561
BsaWI WCCGGW 3 cut(s) 419, 898, 950
Bsc4I CCNNNNNNNGG 2 cut(s) 562, 905
Bse118I RCCGGY 2 cut(s) 749, 898
Bse1I ACTGG 3 cut(s) 498, 544, 816
Bse3DI GCAATG 2 cut(s) 197, 1218
BseAI TCCGGA 1 cut(s) 419
BseBI CCWGG 1 cut(s) 557
BseCI ATCGAT 2 cut(s) 356, 956
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 5 cut(s) 102, 800, 886, 890, 923
BseLI CCNNNNNNNGG 2 cut(s) 562, 905
BseMI GCAATG 2 cut(s) 197, 1218
BseMII CTCAG 3 cut(s) 443, 686, 1190
BseNI ACTGG 3 cut(s) 498, 544, 816
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 4 cut(s) 323, 381, 721, 971
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 952
Bsh1236I CGCG 2 cut(s) 22, 994
BshFI GGCC 3 cut(s) 306, 555, 560
BshNI GGYRCC 2 cut(s) 865, 1011
BshTI ACCGGT 1 cut(s) 898
BshVI ATCGAT 2 cut(s) 356, 956
BsiSI CCGG 5 cut(s) 420, 750, 899, 951, 1015
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 2 cut(s) 562, 905
BsmAI GTCTC 2 cut(s) 328, 673
BsmFI GGGAC 1 cut(s) 804
BsnI GGCC 3 cut(s) 306, 555, 560
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 838
Bsp13I TCCGGA 1 cut(s) 419
Bsp143I GATC 9 cut(s) 36, 92, 353, 357, 438, 447, 953, 957, 1024
BspACI CCGC 2 cut(s) 633, 768
BspANI GGCC 3 cut(s) 306, 555, 560
BspCNI CTCAG 3 cut(s) 444, 685, 1191
BspDI ATCGAT 2 cut(s) 356, 956
BspEI TCCGGA 1 cut(s) 419
BspFNI CGCG 2 cut(s) 22, 994
BspLI GGNNCC 4 cut(s) 94, 511, 867, 1013
BspPI GGATC 4 cut(s) 87, 100, 442, 961
BspT107I GGYRCC 2 cut(s) 865, 1011
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 2 cut(s) 197, 1218
BsrFI RCCGGY 2 cut(s) 749, 898
BsrI ACTGG 3 cut(s) 498, 544, 816
BssAI RCCGGY 2 cut(s) 749, 898
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 9 cut(s) 36, 92, 353, 357, 438, 447, 953, 957, 1024
BssNI GRCGYC 1 cut(s) 1012
BssSI CACGAG 1 cut(s) 653
BssT1I CCWWGG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 5 cut(s) 382, 833, 876, 979, 1071
Bst6I CTCTTC 2 cut(s) 291, 305
BstACI GRCGYC 1 cut(s) 1012
BstC8I GCNNGC 4 cut(s) 638, 751, 755, 1209
BstDEI CTNAG 3 cut(s) 452, 672, 1199
BstF5I GGATG 5 cut(s) 102, 800, 886, 890, 923
BstFNI CGCG 2 cut(s) 22, 994
BstH2I RGCGCY 1 cut(s) 1015
BstHHI GCGC 5 cut(s) 22, 369, 458, 996, 1014
BstKTI GATC 9 cut(s) 39, 95, 356, 360, 441, 450, 956, 960, 1027
BstMAI GTCTC 2 cut(s) 328, 673
BstMBI GATC 9 cut(s) 36, 92, 353, 357, 438, 447, 953, 957, 1024
BstMWI GCNNNNNNNGC 8 cut(s) 208, 411, 750, 776, 993, 1002, 1011, 1213
BstNI CCWGG 1 cut(s) 557
BstNSI RCATGY 2 cut(s) 409, 1106
BstSCI CCNGG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 838
BstUI CGCG 2 cut(s) 22, 994
BstV1I GCAGC 4 cut(s) 323, 381, 721, 971
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 2 cut(s) 92, 447
BstXI CCANNNNNNTGG 2 cut(s) 180, 551
BstYI RGATCY 2 cut(s) 92, 447
Bsu15I ATCGAT 2 cut(s) 356, 956
BsuRI GGCC 3 cut(s) 306, 555, 560
BsuTUI ATCGAT 2 cut(s) 356, 956
BtsCI GGATG 5 cut(s) 102, 800, 886, 890, 923
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 4 cut(s) 387, 396, 838, 1196
Cac8I GCNNGC 4 cut(s) 638, 751, 755, 1209
CfoI GCGC 5 cut(s) 22, 369, 458, 996, 1014
Cfr10I RCCGGY 2 cut(s) 749, 898
Cfr13I GGNCC 2 cut(s) 565, 944
ClaI ATCGAT 2 cut(s) 356, 956
Csp6I GTAC 3 cut(s) 46, 1065, 1153
CspAI ACCGGT 1 cut(s) 898
CviAII CATG 3 cut(s) 406, 1028, 1103
CviQI GTAC 3 cut(s) 46, 1065, 1153
DdeI CTNAG 3 cut(s) 452, 672, 1199
DinI GGCGCC 1 cut(s) 1013
DpnI GATC 9 cut(s) 38, 94, 355, 359, 440, 449, 955, 959, 1026
DpnII GATC 9 cut(s) 36, 92, 353, 357, 438, 447, 953, 957, 1024
DraI TTTAAA 1 cut(s) 1053
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 2 cut(s) 291, 305
EarI CTCTTC 2 cut(s) 291, 305
Eco130I CCWWGG 1 cut(s) 561
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 2 cut(s) 565, 944
EcoRII CCWGG 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 561
EcoT22I ATGCAT 1 cut(s) 1137
EgeI GGCGCC 1 cut(s) 1013
EheI GGCGCC 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 3 cut(s) 409, 1031, 1106
FaiI YATR 9 cut(s) 18, 33, 68, 125, 142, 144, 407, 1029, 1104
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 1 cut(s) 804
FatI CATG 3 cut(s) 405, 1027, 1102
FbaI TGATCA 2 cut(s) 438, 1024
Fnu4HI GCNGC 5 cut(s) 312, 370, 634, 735, 985
FokI GGATG 5 cut(s) 89, 787, 877, 893, 910
Fsp4HI GCNGC 5 cut(s) 312, 370, 634, 735, 985
FspBI CTAG 2 cut(s) 741, 936
GlaI GCGC 5 cut(s) 21, 368, 457, 995, 1013
GluI GCNGC 5 cut(s) 312, 370, 634, 735, 985
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 527
HaeII RGCGCY 1 cut(s) 1015
HaeIII GGCC 3 cut(s) 306, 555, 560
HapII CCGG 5 cut(s) 420, 750, 899, 951, 1015
HhaI GCGC 5 cut(s) 22, 369, 458, 996, 1014
Hin1I GRCGYC 1 cut(s) 1012
Hin1II CATG 3 cut(s) 409, 1031, 1106
Hin6I GCGC 5 cut(s) 20, 367, 456, 994, 1012
HinP1I GCGC 5 cut(s) 20, 367, 456, 994, 1012
HinfI GANTC 1 cut(s) 521
HpaII CCGG 5 cut(s) 420, 750, 899, 951, 1015
HphI GGTGA 8 cut(s) 309, 358, 840, 864, 920, 921, 967, 1034
Hpy166II GTNNAC 2 cut(s) 394, 1067
Hpy188I TCNGA 4 cut(s) 808, 826, 880, 1140
Hpy188III TCNNGA 5 cut(s) 420, 442, 451, 655, 722
Hpy8I GTNNAC 2 cut(s) 394, 1067
Hpy99I CGWCG 2 cut(s) 602, 880
HpyAV CCTTC 2 cut(s) 930, 982
HpyCH4III ACNGT 5 cut(s) 382, 833, 876, 979, 1071
HpyCH4IV ACGT 3 cut(s) 9, 462, 885
HpyCH4V TGCA 4 cut(s) 969, 1135, 1211, 1216
HpyF10VI GCNNNNNNNGC 8 cut(s) 208, 411, 750, 776, 993, 1002, 1011, 1213
HpyF3I CTNAG 3 cut(s) 452, 672, 1199
HpySE526I ACGT 3 cut(s) 9, 462, 885
Hsp92I GRCGYC 1 cut(s) 1012
Hsp92II CATG 3 cut(s) 409, 1031, 1106
HspAI GCGC 5 cut(s) 20, 367, 456, 994, 1012
KasI GGCGCC 1 cut(s) 1011
Kpn2I TCCGGA 1 cut(s) 419
KroI GCCGGC 1 cut(s) 749
KroNI GCCGGC 1 cut(s) 751
Ksp22I TGATCA 2 cut(s) 438, 1024
Kzo9I GATC 9 cut(s) 36, 92, 353, 357, 438, 447, 953, 957, 1024
LmnI GCTCC 3 cut(s) 83, 546, 817
Lsp1109I GCAGC 4 cut(s) 323, 381, 721, 971
LweI GCATC 5 cut(s) 423, 779, 799, 901, 1144
MaeI CTAG 2 cut(s) 741, 936
MaeII ACGT 3 cut(s) 9, 462, 885
MaeIII GTNAC 1 cut(s) 346
MalI GATC 9 cut(s) 38, 94, 355, 359, 440, 449, 955, 959, 1026
MboI GATC 9 cut(s) 36, 92, 353, 357, 438, 447, 953, 957, 1024
MflI RGATCY 2 cut(s) 92, 447
MhlI GDGCHC 1 cut(s) 838
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 5 cut(s) 72, 108, 120, 606, 717
MluNI TGGCCA 1 cut(s) 555
Mly113I GGCGCC 1 cut(s) 1012
MmeI TCCRAC 1 cut(s) 858
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 1 cut(s) 1137
MroI TCCGGA 1 cut(s) 419
MroNI GCCGGC 1 cut(s) 749
MscI TGGCCA 1 cut(s) 555
MseI TTAA 4 cut(s) 1052, 1058, 1149, 1225
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 5 cut(s) 420, 750, 899, 951, 1015
MspR9I CCNGG 1 cut(s) 557
MssI GTTTAAAC 1 cut(s) 1053
MvaI CCWGG 1 cut(s) 557
MvnI CGCG 2 cut(s) 22, 994
MwoI GCNNNNNNNGC 8 cut(s) 208, 411, 750, 776, 993, 1002, 1011, 1213
NaeI GCCGGC 1 cut(s) 751
NarI GGCGCC 1 cut(s) 1012
NdeII GATC 9 cut(s) 36, 92, 353, 357, 438, 447, 953, 957, 1024
NgoMIV GCCGGC 1 cut(s) 749
NlaIII CATG 3 cut(s) 409, 1031, 1106
NlaIV GGNNCC 4 cut(s) 94, 511, 867, 1013
NmeAIII GCCGAG 1 cut(s) 1022
NmuCI GTSAC 1 cut(s) 346
NsiI ATGCAT 1 cut(s) 1137
NspI RCATGY 2 cut(s) 409, 1106
PciI ACATGT 1 cut(s) 1102
PcsI WCGNNNNNNNCGW 3 cut(s) 594, 651, 660
PdiI GCCGGC 1 cut(s) 751
PfeI GAWTC 1 cut(s) 521
PinAI ACCGGT 1 cut(s) 898
PkrI GCNGC 5 cut(s) 313, 371, 635, 736, 986
PluTI GGCGCC 1 cut(s) 1015
PmeI GTTTAAAC 1 cut(s) 1053
PscI ACATGT 1 cut(s) 1102
Psp6I CCWGG 1 cut(s) 555
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 4 cut(s) 94, 511, 867, 1013
PspPI GGNCC 2 cut(s) 565, 944
PsuI RGATCY 2 cut(s) 92, 447
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 3 cut(s) 47, 1066, 1154
RsaNI GTAC 3 cut(s) 46, 1065, 1153
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 4 cut(s) 1052, 1058, 1149, 1225
SatI GCNGC 5 cut(s) 312, 370, 634, 735, 985
Sau3AI GATC 9 cut(s) 36, 92, 353, 357, 438, 447, 953, 957, 1024
Sau96I GGNCC 2 cut(s) 565, 944
ScaI AGTACT 1 cut(s) 1154
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 1 cut(s) 838
SfaNI GCATC 5 cut(s) 423, 779, 799, 901, 1144
SfoI GGCGCC 1 cut(s) 1013
SinI GGWCC 2 cut(s) 565, 944
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 164, 328
SmoI CTYRAG 2 cut(s) 164, 328
Sse9I AATT 5 cut(s) 72, 108, 120, 606, 717
SsiI CCGC 2 cut(s) 633, 768
SspDI GGCGCC 1 cut(s) 1011
SspMI CTAG 2 cut(s) 741, 936
StyD4I CCNGG 1 cut(s) 555
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 5 cut(s) 382, 833, 876, 979, 1071
TaiI ACGT 3 cut(s) 12, 465, 888
TaqI TCGA 3 cut(s) 356, 480, 956
TasI AATT 5 cut(s) 72, 108, 120, 606, 717
TatI WGTACW 1 cut(s) 1152
TauI GCSGC 1 cut(s) 636
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 4 cut(s) 1052, 1058, 1149, 1225
Tru9I TTAA 4 cut(s) 1052, 1058, 1149, 1225
TscAI CASTG 4 cut(s) 387, 396, 838, 1203
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 311, 369, 734, 984
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 17, 568, 879, 912
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 4 cut(s) 387, 396, 838, 1203
VpaK11BI GGWCC 2 cut(s) 565, 944
XapI RAATTY 3 cut(s) 72, 108, 717
XceI RCATGY 2 cut(s) 409, 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XspI CTAG 2 cut(s) 741, 936
ZrmI AGTACT 1 cut(s) 1154
Zsp2I ATGCAT 1 cut(s) 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.