Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Forward (+)

4710483 .. 4712569

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGAACATGAACGCTCTTCAACAAATGATCTTCCCAGACGAGAACGCTCCAATTCATCGCAAAAAGTCTGTCACTGCTGCTTCTGTGAAATCCAAAGGGACTGTACTTGGTCAGAAGAAACCTGGAGGAGCTCGTAAGGCTCTGAATGATATTACAAACAAGTCTGGGATTCATGCGAAAGCTGCTGCTTCTTCAAAGAACAAGCAAATTGCTTCTGCTGCTGTGAAAGAGATTGATATAGCTGGGGAAAGGTTTTTACATGATCACAGCAAATGCATCAAAGAACAGCAAAATCTTTGGGATGATCACTACTCTGCTGATCTCATGCTACTTCATCATGGTTCCAGCATCAAGGAGAAGCATCTCAATTGGGACATTGAAAAGATGGATGCTAAGGACGATCTGACTTACGAAGAACCAGAAGAGATGGCATCGCCCAAGTTTTCTGATTGGCTGAAGAACTCGACTCCATGGCGCTCTCCAATCCGTCATGGCTCTATGATGCCTTCCACTCCTCTGGCTTGGCGGTTCGATTCATGCGAATTCACACTTAAAGAAGACTCTGACGACCTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0007063 GO:0007346 GO:0008150 GO:0010564 GO:0010638 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0034091 GO:0034093 GO:0034094 GO:0034096 GO:0040020 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045787 GO:0045836 GO:0045876 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0065007 GO:0070013 GO:0070602 GO:0090068 GO:2000241 GO:2000243 GO:2000709 GO:2000711 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

21.73

Weight (kDa)

6.75

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	529
AcsI	RAATTY	1 cut(s)	545
AcuI	CTGAAG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	23, 198, 383
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	3 cut(s)	134, 185, 245
AluI	AGCT	3 cut(s)	134, 185, 245
Alw21I	GWGCWC	1 cut(s)	136
ApeKI	GCWGC	4 cut(s)	80, 185, 188, 221
ApoI	RAATTY	1 cut(s)	545
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	4 cut(s)	67, 172, 175, 208
BccI	CCATC	2 cut(s)	382, 424
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	2 cut(s)	265, 307
BfoI	RGCGCY	1 cut(s)	481
BisI	GCNGC	4 cut(s)	81, 186, 189, 222
BlsI	GCNGC	4 cut(s)	82, 187, 190, 223
Bme1390I	CCNGG	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	6 cut(s)	288, 360, 373, 382, 443, 495
BpiI	GAAGAC	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	2 cut(s)	310, 397
BseRI	GAGGAG	2 cut(s)	144, 507
BseXI	GCAGC	4 cut(s)	67, 172, 175, 208
BseYI	CCCAGC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	2 cut(s)	115, 389
BsmFI	GGGAC	2 cut(s)	115, 389
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	5 cut(s)	30, 265, 307, 322, 403
Bsp19I	CCATGG	1 cut(s)	473
BspACI	CCGC	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	346
BspQI	GCTCTTC	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	5 cut(s)	30, 265, 307, 322, 403
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	24, 420
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	2 cut(s)	310, 397
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	5 cut(s)	33, 268, 310, 325, 406
BstMBI	GATC	5 cut(s)	30, 265, 307, 322, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 185, 221
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstV1I	GCAGC	4 cut(s)	67, 172, 175, 208
BstV2I	GAAGAC	1 cut(s)	567
BstXI	CCANNNNNNTGG	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	473
BtgZI	GCGATG	2 cut(s)	44, 420
BtsCI	GGATG	2 cut(s)	310, 397
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
CfoI	GCGC	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	8 cut(s)	10, 176, 263, 328, 341, 474, 494, 540
CviJI	RGCY	7 cut(s)	134, 143, 185, 245, 457, 498, 524
CviKI_1	RGCY	7 cut(s)	134, 143, 185, 245, 457, 498, 524
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	5 cut(s)	32, 267, 309, 324, 405
DpnII	GATC	5 cut(s)	30, 265, 307, 322, 403
Eam1104I	CTCTTC	2 cut(s)	24, 420
EarI	CTCTTC	2 cut(s)	24, 420
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	8 cut(s)	13, 179, 266, 331, 344, 477, 497, 543
FaqI	GGGAC	2 cut(s)	115, 389
FatI	CATG	8 cut(s)	9, 175, 262, 327, 340, 473, 493, 539
FbaI	TGATCA	2 cut(s)	265, 307
Fnu4HI	GCNGC	4 cut(s)	81, 186, 189, 222
FokI	GGATG	2 cut(s)	317, 404
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	4 cut(s)	81, 186, 189, 222
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	4 cut(s)	81, 186, 189, 222
GsaI	CCCAGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	481
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	8 cut(s)	13, 179, 266, 331, 344, 477, 497, 543
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	172, 469, 536, 563
Hpy188I	TCNGA	6 cut(s)	117, 147, 408, 451, 568, 581
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 185, 221
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	8 cut(s)	13, 179, 266, 331, 344, 477, 497, 543
HspAI	GCGC	1 cut(s)	478
Ksp22I	TGATCA	2 cut(s)	265, 307
Kzo9I	GATC	5 cut(s)	30, 265, 307, 322, 403
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	55, 131
LpnPI	CCDG	8 cut(s)	51, 111, 138, 153, 231, 361, 435, 506
Lsp1109I	GCAGC	4 cut(s)	67, 172, 175, 208
LweI	GCATC	6 cut(s)	288, 360, 373, 382, 443, 495
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	5 cut(s)	32, 267, 309, 324, 405
MboI	GATC	5 cut(s)	30, 265, 307, 322, 403
MboII	GAAGA	9 cut(s)	11, 25, 130, 186, 428, 437, 472, 568, 572
MfeI	CAATTG	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	4 cut(s)	54, 210, 370, 545
MlyI	GAGTC	2 cut(s)	463, 557
MnlI	CCTC	2 cut(s)	122, 528
Mph1103I	ATGCAT	1 cut(s)	281
MseI	TTAA	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	140, 185, 221
NcoI	CCATGG	1 cut(s)	473
NdeII	GATC	5 cut(s)	30, 265, 307, 322, 403
NlaIII	CATG	8 cut(s)	13, 179, 266, 331, 344, 477, 497, 543
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	172, 536
PkrI	GCNGC	4 cut(s)	82, 187, 190, 223
PleI	GAGTC	2 cut(s)	463, 557
PpsI	GAGTC	2 cut(s)	463, 557
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	346
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	4 cut(s)	81, 186, 189, 222
Sau3AI	GATC	5 cut(s)	30, 265, 307, 322, 403
SchI	GAGTC	2 cut(s)	463, 557
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	6 cut(s)	127, 136, 187, 247, 257, 576
SfaNI	GCATC	6 cut(s)	288, 360, 373, 382, 443, 495
Sse9I	AATT	4 cut(s)	54, 210, 370, 545
SsiI	CCGC	1 cut(s)	529
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	467, 534
TasI	AATT	4 cut(s)	54, 210, 370, 545
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	172, 536
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	4 cut(s)	80, 185, 188, 221
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	5 cut(s)	26, 47, 164, 326, 528
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	545
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.