Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

27102426 .. 27107111

Gene Structure 4686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCATCAAAAGTAGTTCGTTTGATTCAGGATCAGAACCTCAATGTTCACTCTGATGGAGCTTCAGTTGCGGGAAAGGGTGATGCATTCAAATCAACCAAGAAAGGGGGACTTGGTGGAAGGAAACCCCTAGGAGATCTATCAAATAGGGGAAAGCCTGATTTTACCAAGGCATCAAAAAAGCCTGCTCTCACCAATGTTCTTGAAATCATTGCTGATGCAAGCAATAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTCATGGCAGCCATGAGGAACTATCTGATGTGTCTAACACAGTCAGACCACCCCTTCAGAAGACTTCAAGTGTTACGGCAGATGAATCCTCTTGTGATTTTGAGAAGGAAGGTTTCCTGCATGACCGTAAACAGTGCATCAAGGAAACGAGAGAGGCTAACCAGAGGGATCAAATGGATATATTTGGGATGATGCATACAAGTCCATCCAAGATTCTTTCATCTCCACCAAAAGATTCTCAGTTTACCAAAGATGAGGAGGACAGTCTGACCATGTACTTGGAAGGGATACCTGAGGACTCCTCCTTCTCCTCACTTCCTTGGAATTCTCCACCTCTATCACCAGTACCCTGTACCGATTCCCCTTGTATTTTGGAGGAGTGTGATCTTCAGGTGACGGAAACACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

224

Amino Acids

24.34

Weight (kDa)

5.44

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	39, 441
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	3 cut(s)	48, 305, 638
AfaI	GTAC	3 cut(s)	542, 612, 619
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	91, 206, 333
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
AlwI	GGATC	2 cut(s)	39, 441
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	589
AspA2I	CCTAGG	1 cut(s)	130
AsuHPI	GGTGA	4 cut(s)	92, 184, 597, 670
AvrII	CCTAGG	1 cut(s)	130
AxyI	CCTNAGG	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	2 cut(s)	50, 478
BceAI	ACGGC	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	546
BfaI	CTAG	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	546
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	274
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	275
BmsI	GCATC	6 cut(s)	14, 73, 182, 208, 411, 447
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	551, 583
BsaJI	CCNNGG	4 cut(s)	130, 168, 249, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	608
Bse21I	CCTNAGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	210
BseDI	CCNNGG	4 cut(s)	130, 168, 249, 584
BseGI	GGATG	2 cut(s)	459, 470
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	518, 549
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	4 cut(s)	536, 556, 565, 656
BseXI	GCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	31, 136, 433, 649
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	517, 550
BspPI	GGATC	2 cut(s)	39, 441
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	4 cut(s)	130, 168, 249, 584
BssMI	GATC	4 cut(s)	31, 136, 433, 649
BssT1I	CCWWGG	3 cut(s)	130, 168, 584
Bst4CI	ACNGT	4 cut(s)	307, 392, 399, 530
BstC8I	GCNNGC	2 cut(s)	186, 223
BstDEI	CTNAG	2 cut(s)	504, 558
BstF5I	GGATG	2 cut(s)	459, 470
BstKTI	GATC	4 cut(s)	34, 139, 436, 652
BstMBI	GATC	4 cut(s)	31, 136, 433, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	459, 470
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	186, 223
Csp6I	GTAC	3 cut(s)	541, 611, 618
CviAII	CATG	4 cut(s)	269, 278, 386, 538
CviJI	RGCY	7 cut(s)	62, 157, 184, 237, 248, 276, 422
CviKI_1	RGCY	7 cut(s)	62, 157, 184, 237, 248, 276, 422
CviQI	GTAC	3 cut(s)	541, 611, 618
DdeI	CTNAG	2 cut(s)	504, 558
DpnI	GATC	4 cut(s)	33, 138, 435, 651
DpnII	GATC	4 cut(s)	31, 136, 433, 649
Eco130I	CCWWGG	3 cut(s)	130, 168, 584
Eco147I	AGGCCT	1 cut(s)	237
Eco57I	CTGAAG	3 cut(s)	48, 305, 638
Eco81I	CCTNAGG	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	130, 168, 584
EcoT22I	ATGCAT	2 cut(s)	88, 462
ErhI	CCWWGG	3 cut(s)	130, 168, 584
FaeI	CATG	4 cut(s)	272, 281, 389, 541
FaiI	YATR	7 cut(s)	270, 279, 387, 446, 462, 539, 673
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	268, 277, 385, 537
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	2 cut(s)	457, 466
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	272, 281, 389, 541
HinfI	GANTC	7 cut(s)	25, 265, 350, 478, 500, 563, 623
HphI	GGTGA	4 cut(s)	92, 184, 597, 670
Hpy166II	GTNNAC	3 cut(s)	49, 395, 510
Hpy188I	TCNGA	7 cut(s)	36, 55, 253, 292, 311, 324, 534
Hpy188III	TCNNGA	2 cut(s)	29, 203
Hpy8I	GTNNAC	3 cut(s)	49, 395, 510
HpyAV	CCTTC	6 cut(s)	114, 329, 364, 368, 542, 580
HpyCH4III	ACNGT	4 cut(s)	307, 392, 399, 530
HpyCH4V	TGCA	6 cut(s)	86, 221, 262, 385, 402, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	504, 558
Hsp92II	CATG	4 cut(s)	272, 281, 389, 541
Kzo9I	GATC	4 cut(s)	31, 136, 433, 649
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	9 cut(s)	14, 171, 198, 395, 440, 570, 621, 628, 641
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	6 cut(s)	14, 73, 182, 208, 411, 447
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	337, 658
MalI	GATC	4 cut(s)	33, 138, 435, 651
MboI	GATC	4 cut(s)	31, 136, 433, 649
MboII	GAAGA	2 cut(s)	337, 644
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	589
MlyI	GAGTC	2 cut(s)	259, 557
Mph1103I	ATGCAT	2 cut(s)	88, 462
MslI	CAYNNNNRTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	4 cut(s)	31, 136, 433, 649
NlaIII	CATG	4 cut(s)	272, 281, 389, 541
NmuCI	GTSAC	1 cut(s)	658
NsiI	ATGCAT	2 cut(s)	88, 462
PceI	AGGCCT	1 cut(s)	237
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	5 cut(s)	25, 350, 478, 500, 623
PkrI	GCNGC	1 cut(s)	275
PleI	GAGTC	2 cut(s)	259, 557
PpsI	GAGTC	2 cut(s)	259, 557
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	3 cut(s)	542, 612, 619
RsaNI	GTAC	3 cut(s)	541, 611, 618
RseI	CAYNNNNRTG	1 cut(s)	54
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	4 cut(s)	31, 136, 433, 649
SchI	GAGTC	2 cut(s)	259, 557
SetI	ASST	6 cut(s)	42, 64, 379, 559, 601, 660
SfaNI	GCATC	6 cut(s)	14, 73, 182, 208, 411, 447
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	589
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	131
StuI	AGGCCT	1 cut(s)	237
StyI	CCWWGG	3 cut(s)	130, 168, 584
TaaI	ACNGT	4 cut(s)	307, 392, 399, 530
TasI	AATT	1 cut(s)	589
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	5 cut(s)	25, 350, 478, 500, 623
TscAI	CASTG	1 cut(s)	404
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	2 cut(s)	363, 474
TspRI	CASTG	1 cut(s)	404
XapI	RAATTY	1 cut(s)	589
XmaJI	CCTAGG	1 cut(s)	130
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	2 cut(s)	88, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.