Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8450015.1

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 510

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8450015.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

aacacagtgaaaccaccccttcagaagacttcaagtgctgtggcagaggaatcctcttgtgattttgagaaggaaggtttcctgcatgaccataaacagtgcatcaaagcaatgagagaggctgcccacatggatcaaatggatatatttaggatgctacatggaccaaatccattcaagattctttcatctccaccaaaagcttctcagtttaccaaagttgaggaggagagtctgacgatgtacttggaagagatacctgaggatcaatccaccttgctgcctgtcaagcaggactcctccgtctcctcacctccttgcaattctccacctctatcaccagtacactgtaccgattccccttggatttgggaggagtgtgattttcaggtgatgggaacaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

135

Amino Acids

15.16

Weight (kDa)

4.8

Isoelectric Point (pI)

83.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AclWI	GGATC	2 cut(s)	141, 273
AcuI	CTGAAG	1 cut(s)	5
AfaI	GTAC	3 cut(s)	245, 345, 352
AgsI	TTSAA	2 cut(s)	33, 178
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	141, 273
ApeKI	GCWGC	2 cut(s)	122, 280
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	303, 330, 403
AvaII	GGWCC	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	109, 267
BccI	CCATC	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	310
BisI	GCNGC	2 cut(s)	123, 281
BlsI	GCNGC	2 cut(s)	124, 282
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmsI	GCATC	2 cut(s)	111, 144
BpiI	GAAGAC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BsaJI	CCNNGG	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	221, 252
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	5 cut(s)	239, 242, 289, 298, 389
BseXI	GCAGC	2 cut(s)	109, 267
BsmAI	GTCTC	1 cut(s)	310
BsmBI	CGTCTC	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	133, 265
BspCNI	CTCAG	2 cut(s)	220, 253
BspPI	GGATC	2 cut(s)	141, 273
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	2 cut(s)	133, 265
BssT1I	CCWWGG	1 cut(s)	362
Bst4CI	ACNGT	3 cut(s)	7, 99, 350
Bst6I	CTCTTC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	207, 261
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	2 cut(s)	136, 268
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	2 cut(s)	133, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstV1I	GCAGC	2 cut(s)	109, 267
BstV2I	GAAGAC	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	3 cut(s)	12, 104, 346
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	244, 344, 351
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	3 cut(s)	86, 130, 161
CviJI	RGCY	2 cut(s)	122, 203
CviKI_1	RGCY	2 cut(s)	122, 203
CviQI	GTAC	3 cut(s)	244, 344, 351
DdeI	CTNAG	2 cut(s)	207, 261
DpnI	GATC	2 cut(s)	135, 267
DpnII	GATC	2 cut(s)	133, 265
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	5
Eco81I	CCTNAGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	362
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	3 cut(s)	89, 133, 164
FaiI	YATR	6 cut(s)	87, 93, 131, 146, 162, 406
FatI	CATG	3 cut(s)	85, 129, 160
Fnu4HI	GCNGC	2 cut(s)	123, 281
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	123, 281
GluI	GCNGC	2 cut(s)	123, 281
Hin1II	CATG	3 cut(s)	89, 133, 164
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	5 cut(s)	50, 181, 232, 296, 356
HphI	GGTGA	3 cut(s)	303, 330, 403
Hpy166II	GTNNAC	2 cut(s)	213, 346
Hpy188I	TCNGA	2 cut(s)	24, 237
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	213, 346
HpyAV	CCTTC	3 cut(s)	29, 64, 68
HpyCH4III	ACNGT	3 cut(s)	7, 99, 350
HpyCH4V	TGCA	3 cut(s)	85, 102, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	2 cut(s)	207, 261
Hsp92II	CATG	3 cut(s)	89, 133, 164
Kzo9I	GATC	2 cut(s)	133, 265
LpnPI	CCDG	6 cut(s)	95, 273, 278, 297, 354, 374
Lsp1109I	GCAGC	2 cut(s)	109, 267
LweI	GCATC	2 cut(s)	111, 144
MalI	GATC	2 cut(s)	135, 267
MboI	GATC	2 cut(s)	133, 265
MboII	GAAGA	2 cut(s)	37, 263
MluCI	AATT	1 cut(s)	322
MlyI	GAGTC	2 cut(s)	241, 290
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	2 cut(s)	133, 265
NlaIII	CATG	3 cut(s)	89, 133, 164
PfeI	GAWTC	3 cut(s)	50, 181, 356
PkrI	GCNGC	2 cut(s)	124, 282
PleI	GAGTC	2 cut(s)	240, 290
PpsI	GAGTC	2 cut(s)	240, 290
PspPI	GGNCC	1 cut(s)	164
RsaI	GTAC	3 cut(s)	245, 345, 352
RsaNI	GTAC	3 cut(s)	244, 344, 351
SatI	GCNGC	2 cut(s)	123, 281
Sau3AI	GATC	2 cut(s)	133, 265
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	241, 290
SetI	ASST	7 cut(s)	79, 205, 262, 278, 316, 334, 393
SfaNI	GCATC	2 cut(s)	111, 144
SinI	GGWCC	1 cut(s)	164
Sse9I	AATT	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	7, 99, 350
TasI	AATT	1 cut(s)	322
TatI	WGTACW	2 cut(s)	243, 343
TfiI	GAWTC	3 cut(s)	50, 181, 356
TscAI	CASTG	3 cut(s)	12, 104, 353
TseI	GCWGC	2 cut(s)	122, 280
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	3 cut(s)	12, 104, 353
VpaK11BI	GGWCC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.