Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

28005861 .. 28008682

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCATCAAAAGTAGTTCGTTTGATTCAGGATCAGAACCTCAATGTTCACTCTGATGGAGCTTCAGTTGCGGGAAAGGGTGATGCATTCAAATCAACCAAGAAAGGGGGACTTGGTGGAAGGAAACCTCTAGGAGATCTATCAAATAGGGGAAAGCCTGATTTTACCAAGGCATCAAAAAAGCCTGCTCTCACCAATGTTCCTGAAATCATTGCTGATGCAAGCAATAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAGCCGCAAGGCACCATCTGATGTGTCTAACACAGTGAAACCACCCCTTCAGAAGACTTCAAGTGCTGTGGCAGAGGAATCCTCTTGCGATTTTGAGAAGGAAGGTTTCCTGCACGACCATAAACAGTGCATCAAAGCAATGAGAGAGGCTGCCCACATGGATCAAATGGATATATTTAGGATGATACATGGACCAAATCCGTTCAAGATTCTTTCATCTCCACCAAAAGCTTCTCAGTTTACCAAAGTTGAGGAGGAGACTGTGTACTTGGAAGAGATACCTGAGGATCAATCCATCTTGCTGCCTATCAAGCAGGACTCTTCCGTCTCTTCACCTCCTTGCAATTCTCCACCTCTATCACCAGTACCCTGTACCGATTCCCCTTGTATTTCGGAGGAGTGTGATTTTCAGGTGATGGGAACACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

233

Amino Acids

25.1

Weight (kDa)

7.6

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	283
AciI	CCGC	2 cut(s)	71, 277
AclWI	GGATC	3 cut(s)	39, 441, 567
AcuI	CTGAAG	2 cut(s)	48, 305
AfaI	GTAC	3 cut(s)	539, 639, 646
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	91, 333, 478
AluBI	AGCT	2 cut(s)	62, 503
AluI	AGCT	2 cut(s)	62, 503
Alw26I	GTCTC	2 cut(s)	524, 604
AlwI	GGATC	3 cut(s)	39, 441, 567
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	3 cut(s)	273, 422, 574
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	5 cut(s)	92, 184, 597, 624, 697
AvaII	GGWCC	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	285, 409, 561
BccI	CCATC	4 cut(s)	50, 295, 575, 682
BcoDI	GTCTC	2 cut(s)	524, 604
BfaI	CTAG	1 cut(s)	131
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	4 cut(s)	274, 277, 423, 575
BlsI	GCNGC	4 cut(s)	275, 278, 424, 576
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	5 cut(s)	14, 73, 182, 208, 411
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BsaJI	CCNNGG	2 cut(s)	168, 249
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 521, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	635
Bse21I	CCTNAGG	1 cut(s)	555
Bse3DI	GCAATG	2 cut(s)	210, 417
BseDI	CCNNGG	2 cut(s)	168, 249
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	2 cut(s)	210, 417
BseMII	CTCAG	2 cut(s)	521, 546
BseNI	ACTGG	1 cut(s)	635
BseRI	GAGGAG	3 cut(s)	539, 542, 683
BseXI	GCAGC	3 cut(s)	285, 409, 561
BsgI	GTGCAG	2 cut(s)	281, 368
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	524, 604
BsmBI	CGTCTC	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	31, 136, 433, 559
BspACI	CCGC	2 cut(s)	71, 277
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	520, 547
BspLI	GGNNCC	1 cut(s)	285
BspPI	GGATC	3 cut(s)	39, 441, 567
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	2 cut(s)	210, 417
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	2 cut(s)	168, 249
BssMI	GATC	4 cut(s)	31, 136, 433, 559
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	307, 399, 535
Bst6I	CTCTTC	3 cut(s)	540, 598, 607
BstC8I	GCNNGC	2 cut(s)	186, 223
BstDEI	CTNAG	2 cut(s)	507, 555
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	4 cut(s)	34, 139, 436, 562
BstMAI	GTCTC	2 cut(s)	524, 604
BstMBI	GATC	4 cut(s)	31, 136, 433, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 583
BstV1I	GCAGC	3 cut(s)	285, 409, 561
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	312, 404
Cac8I	GCNNGC	2 cut(s)	186, 223
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	538, 638, 645
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	2 cut(s)	430, 461
CviJI	RGCY	8 cut(s)	62, 157, 184, 237, 248, 276, 422, 503
CviKI_1	RGCY	8 cut(s)	62, 157, 184, 237, 248, 276, 422, 503
CviQI	GTAC	3 cut(s)	538, 638, 645
DdeI	CTNAG	2 cut(s)	507, 555
DpnI	GATC	4 cut(s)	33, 138, 435, 561
DpnII	GATC	4 cut(s)	31, 136, 433, 559
DrdI	GACNNNNNNGTC	1 cut(s)	596
DseDI	GACNNNNNNGTC	1 cut(s)	596
Eam1104I	CTCTTC	3 cut(s)	540, 598, 607
EarI	CTCTTC	3 cut(s)	540, 598, 607
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	48, 305
Eco81I	CCTNAGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	604
FaeI	CATG	2 cut(s)	433, 464
FaiI	YATR	5 cut(s)	393, 431, 446, 462, 700
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	2 cut(s)	429, 460
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	274, 277, 423, 575
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	4 cut(s)	274, 277, 423, 575
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	4 cut(s)	274, 277, 423, 575
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	433, 464
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	6 cut(s)	25, 265, 350, 481, 590, 650
HphI	GGTGA	5 cut(s)	92, 184, 597, 624, 697
Hpy166II	GTNNAC	3 cut(s)	49, 513, 538
Hpy188I	TCNGA	6 cut(s)	36, 55, 253, 292, 324, 667
Hpy188III	TCNNGA	3 cut(s)	29, 203, 478
Hpy8I	GTNNAC	3 cut(s)	49, 513, 538
HpyAV	CCTTC	4 cut(s)	114, 329, 364, 368
HpyCH4III	ACNGT	3 cut(s)	307, 399, 535
HpyCH4V	TGCA	6 cut(s)	86, 221, 262, 385, 402, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 583
HpyF3I	CTNAG	2 cut(s)	507, 555
Hsp92II	CATG	2 cut(s)	433, 464
Kzo9I	GATC	4 cut(s)	31, 136, 433, 559
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	3 cut(s)	285, 409, 561
LweI	GCATC	5 cut(s)	14, 73, 182, 208, 411
MaeI	CTAG	1 cut(s)	131
MalI	GATC	4 cut(s)	33, 138, 435, 561
MboI	GATC	4 cut(s)	31, 136, 433, 559
MboII	GAAGA	4 cut(s)	337, 557, 585, 594
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	616
MlyI	GAGTC	2 cut(s)	259, 584
Mph1103I	ATGCAT	1 cut(s)	88
MslI	CAYNNNNRTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	68, 583
NdeII	GATC	4 cut(s)	31, 136, 433, 559
NlaIII	CATG	2 cut(s)	433, 464
NlaIV	GGNNCC	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	237
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	25, 350, 481, 650
PkrI	GCNGC	4 cut(s)	275, 278, 424, 576
PleI	GAGTC	2 cut(s)	259, 584
PpsI	GAGTC	2 cut(s)	259, 584
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	3 cut(s)	539, 639, 646
RsaNI	GTAC	3 cut(s)	538, 638, 645
RseI	CAYNNNNRTG	1 cut(s)	54
SatI	GCNGC	4 cut(s)	274, 277, 423, 575
Sau3AI	GATC	4 cut(s)	31, 136, 433, 559
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	2 cut(s)	259, 584
SetI	ASST	9 cut(s)	42, 64, 130, 379, 505, 556, 610, 628, 687
SfaNI	GCATC	5 cut(s)	14, 73, 182, 208, 411
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	616
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	2 cut(s)	71, 277
SspMI	CTAG	1 cut(s)	131
StuI	AGGCCT	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	307, 399, 535
TasI	AATT	1 cut(s)	616
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	4 cut(s)	25, 350, 481, 650
TscAI	CASTG	2 cut(s)	312, 404
TseI	GCWGC	3 cut(s)	273, 422, 574
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	2 cut(s)	462, 586
TspRI	CASTG	2 cut(s)	312, 404
VpaK11BI	GGWCC	1 cut(s)	464
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.