RchiOBHm_Chr3g0482771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001257
Physical Location & Seq
Forward (+)
28862607 .. 28865818
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44759

Sequence Viewer

Length: 678 bp
ATGGCATCAACAATTGGTCGATTGTTTCAAGATCAGAACCTCAGTGTTCACTCTAATGGGGATTCTGCTGTTGGAAAGGGTGGTGCAAAACAACAGAAGAAAGCAGGGTTTGGTGGAAGGAAACCTCTAGGAGATGTATCGAATACAGGGAAGCCTGATTTTACCAAGGTGTCGAAAAAGCCTGCTCTTACCAATGTTTCTGAAATCATTGCTGATGCAAGCAATAAGAAAGGCCTTTGTAAAGCCTCGGATAAAGTGCAGACTCATGGCAGCCGCAAGGCACTATCTGATGTGTCTAACACAGTCAAACCACCTGTGCACAAGAAGTCAAGTGTTGTGGCACAACCACCTTGTGGTTTTGAGGAAGAAGGATACTTGCATGACCATCAACAGTGCATCAAATCTATGAGAAAGGCTAACCAAATGGATCAAATGGATTTTTTTATGACAATACAAGGATCAGATTCATCCAAGATGCTTCTATCTCCCTGTGCAGTTTCTCAGTTTCGTAAAGTTGAGCCGGAGAGTTCCATGAGGTACTTGGATTTGAAAGAGATGCCTGAGCTGTCTATCAAGTTTGACTCTTCACCTCATTGCAAGTCTCCATTGTCACCAACTCATACCAAGTCCACTTGGATTTGGGATGATTGTGATTTTCAGGTGATGGAGACACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.68

Weight (kDa)

8.95

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 435, 466
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 2 cut(s) 29, 550
AluBI AGCT 1 cut(s) 565
AluI AGCT 1 cut(s) 565
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 606, 662
Alw44I GTGCAC 1 cut(s) 317
AlwI GGATC 2 cut(s) 435, 466
AoxI GGCC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 579, 603, 673
BaeGI GKGCMC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 393, 658
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 606, 662
BfaI CTAG 1 cut(s) 128
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 2 cut(s) 271, 274
BlsI GCNGC 2 cut(s) 272, 275
BmsI GCATC 5 cut(s) 14, 205, 405, 465, 546
Bpu10I CCTNAGC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 165, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse3DI GCAATG 2 cut(s) 207, 592
BseDI CCNNGG 2 cut(s) 165, 246
BseGI GGATG 2 cut(s) 467, 649
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 2 cut(s) 207, 592
BseMII CTCAG 3 cut(s) 55, 515, 552
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 1 cut(s) 282
BsgI GTGCAG 2 cut(s) 278, 513
BshFI GGCC 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 606, 662
BsnI GGCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 31, 427, 458
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 3 cut(s) 54, 514, 553
BspPI GGATC 2 cut(s) 435, 466
BsrDI GCAATG 2 cut(s) 207, 592
BssECI CCNNGG 2 cut(s) 165, 246
BssMI GATC 3 cut(s) 31, 427, 458
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 304, 393
Bst6I CTCTTC 1 cut(s) 589
BstC8I GCNNGC 2 cut(s) 183, 220
BstDEI CTNAG 4 cut(s) 41, 501, 561, 675
BstF5I GGATG 2 cut(s) 467, 649
BstKTI GATC 3 cut(s) 34, 430, 461
BstMAI GTCTC 2 cut(s) 606, 662
BstMBI GATC 3 cut(s) 31, 427, 458
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 282
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 467, 649
BtsIMutI CAGTG 2 cut(s) 49, 398
Cac8I GCNNGC 2 cut(s) 183, 220
Csp6I GTAC 1 cut(s) 538
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 3 cut(s) 266, 380, 532
CviJI RGCY 8 cut(s) 154, 181, 234, 245, 273, 416, 520, 565
CviKI_1 RGCY 8 cut(s) 154, 181, 234, 245, 273, 416, 520, 565
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 4 cut(s) 41, 501, 561, 675
DpnI GATC 3 cut(s) 33, 429, 460
DpnII GATC 3 cut(s) 31, 427, 458
DraIII CACNNNGTG 1 cut(s) 353
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 3 cut(s) 269, 383, 535
FaiI YATR 6 cut(s) 267, 381, 407, 446, 533, 621
FatI CATG 3 cut(s) 265, 379, 531
Fnu4HI GCNGC 2 cut(s) 271, 274
FokI GGATG 2 cut(s) 454, 656
Fsp4HI GCNGC 2 cut(s) 271, 274
FspBI CTAG 1 cut(s) 128
GluI GCNGC 2 cut(s) 271, 274
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 521
Hin1II CATG 3 cut(s) 269, 383, 535
HinfI GANTC 4 cut(s) 62, 262, 464, 581
HpaII CCGG 1 cut(s) 521
HphI GGTGA 3 cut(s) 579, 603, 673
Hpy166II GTNNAC 3 cut(s) 49, 319, 630
Hpy188I TCNGA 5 cut(s) 36, 202, 250, 289, 463
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 3 cut(s) 49, 319, 630
HpyAV CCTTC 2 cut(s) 111, 362
HpyCH4III ACNGT 2 cut(s) 304, 393
HpyCH4V TGCA 8 cut(s) 86, 218, 259, 319, 379, 396, 494, 597
HpyF3I CTNAG 4 cut(s) 41, 501, 561, 675
Hsp92II CATG 3 cut(s) 269, 383, 535
Kzo9I GATC 3 cut(s) 31, 427, 458
LpnPI CCDG 9 cut(s) 90, 132, 168, 195, 327, 502, 534, 573, 644
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 5 cut(s) 14, 205, 405, 465, 546
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 609
MalI GATC 3 cut(s) 33, 429, 460
MboI GATC 3 cut(s) 31, 427, 458
MboII GAAGA 3 cut(s) 109, 377, 576
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 12
MlyI GAGTC 2 cut(s) 256, 575
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 6 cut(s) 50, 135, 256, 355, 528, 600
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 521
MunI CAATTG 1 cut(s) 12
NdeII GATC 3 cut(s) 31, 427, 458
NlaIII CATG 3 cut(s) 269, 383, 535
NmuCI GTSAC 1 cut(s) 609
PceI AGGCCT 1 cut(s) 234
PfeI GAWTC 2 cut(s) 62, 464
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 2 cut(s) 272, 275
PleI GAGTC 2 cut(s) 256, 575
PpsI GAGTC 2 cut(s) 256, 575
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 1 cut(s) 54
SatI GCNGC 2 cut(s) 271, 274
Sau3AI GATC 3 cut(s) 31, 427, 458
SchI GAGTC 2 cut(s) 256, 575
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 5 cut(s) 14, 205, 405, 465, 546
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 128
StuI AGGCCT 1 cut(s) 234
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 304, 393
TaqI TCGA 3 cut(s) 19, 140, 173
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 2 cut(s) 62, 464
TscAI CASTG 2 cut(s) 49, 398
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 2 cut(s) 49, 398
Van91I CCANNNNNTGG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.