Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

28478344 .. 28480905

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCATCAAAAGTAGTTCGTTTGATTCAGGATCAGAACCTTAATGTTCACTCTGATGGAGCTTCAGTTGCAGGAAAGGGTGATGCATTCAAATCAACCAAGAAAGGGGGACTTGGTGGAAGGAAACCTCTAGGAGATCTATCAAATAGGGGAAAGCCTGACTTTACCAAGGCATCAAAAAAACCTGCTCTCACCAATGTTCCTGAAATCATTGCTGATGCAAGCAATAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAGCCGCAAGGCACTATCTGATGTTTCTAACACGGTGAAACCACCCCTTCAGAAGGCTTCAAGTGCTGTGGCAGAGGAATCCTCTTGTGATTTTGAGAAGGAAGGTTTCCTGCACGACCATAAACAGTGTATCAAAGCAATGAGAGAGGCTACCCACATGGATCAAATGGATATATTTAGGATGATACATGGACCAAATCCATTCAAGATTCTTTCATCTCCACCAAAAGCTTCTCAGTTCACCAAAGTTCAGGAGGAGAGTCTGACGATGTTCTTGGAAGAGATACCTGAGGATCAATCCACCTTGCTGCCTGTCAAGCAGGACTCCTCCGTCTCCTCACCTCCTTGCAATTCTCCACCTCTATCACCAGTACGCTATACCGATTCCCCTTGGATTTGGGAGTGTGATTTTCAGGTGATGGGAACACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

234

Amino Acids

25.48

Weight (kDa)

8.8

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	193
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	3 cut(s)	39, 441, 573
AcuI	CTGAAG	2 cut(s)	48, 305
AfaI	GTAC	1 cut(s)	645
AfiI	CCNNNNNNNGG	2 cut(s)	105, 325
AgsI	TTSAA	3 cut(s)	91, 333, 478
AluBI	AGCT	2 cut(s)	62, 503
AluI	AGCT	2 cut(s)	62, 503
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	3 cut(s)	39, 441, 573
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	273, 580
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	7 cut(s)	92, 184, 319, 505, 603, 630, 700
AvaII	GGWCC	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	561
BauI	CACGAG	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	285, 567
BccI	CCATC	2 cut(s)	50, 685
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	3 cut(s)	274, 277, 581
BlsI	GCNGC	3 cut(s)	275, 278, 582
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmsI	GCATC	4 cut(s)	14, 73, 182, 208
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BsaJI	CCNNGG	3 cut(s)	168, 249, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 325
Bse1I	ACTGG	1 cut(s)	641
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	2 cut(s)	210, 417
BseDI	CCNNGG	3 cut(s)	168, 249, 662
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	105, 325
BseMI	GCAATG	2 cut(s)	210, 417
BseMII	CTCAG	2 cut(s)	521, 552
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	3 cut(s)	542, 589, 598
BseXI	GCAGC	2 cut(s)	285, 567
BsgI	GTGCAG	2 cut(s)	281, 368
BshFI	GGCC	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	105, 325
BsmAI	GTCTC	1 cut(s)	610
BsmBI	CGTCTC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	31, 136, 433, 565
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	520, 553
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	3 cut(s)	39, 441, 573
BsrDI	GCAATG	2 cut(s)	210, 417
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	3 cut(s)	168, 249, 662
BssMI	GATC	4 cut(s)	31, 136, 433, 565
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	168, 662
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	307, 399
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	507, 561
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	4 cut(s)	34, 139, 436, 568
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	4 cut(s)	31, 136, 433, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 335, 589
BstV1I	GCAGC	2 cut(s)	285, 567
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	404
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	644
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	2 cut(s)	430, 461
CviJI	RGCY	8 cut(s)	62, 157, 237, 248, 276, 329, 422, 503
CviKI_1	RGCY	8 cut(s)	62, 157, 237, 248, 276, 329, 422, 503
CviQI	GTAC	1 cut(s)	644
DdeI	CTNAG	2 cut(s)	507, 561
DpnI	GATC	4 cut(s)	33, 138, 435, 567
DpnII	GATC	4 cut(s)	31, 136, 433, 565
DrdI	GACNNNNNNGTC	1 cut(s)	602
DseDI	GACNNNNNNGTC	1 cut(s)	602
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	168, 662
Eco147I	AGGCCT	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	48, 305
Eco81I	CCTNAGG	1 cut(s)	561
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	168, 662
EcoT22I	ATGCAT	1 cut(s)	88
ErhI	CCWWGG	2 cut(s)	168, 662
Esp3I	CGTCTC	1 cut(s)	610
FaeI	CATG	2 cut(s)	433, 464
FaiI	YATR	6 cut(s)	393, 431, 446, 462, 651, 703
FalI	AAGNNNNNCTT	4 cut(s)	96, 128, 146, 178
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	2 cut(s)	429, 460
Fnu4HI	GCNGC	3 cut(s)	274, 277, 581
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	3 cut(s)	274, 277, 581
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	3 cut(s)	274, 277, 581
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	433, 464
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	7 cut(s)	25, 265, 350, 481, 532, 596, 656
HphI	GGTGA	7 cut(s)	92, 184, 319, 505, 603, 630, 700
Hpy166II	GTNNAC	2 cut(s)	49, 513
Hpy188I	TCNGA	6 cut(s)	36, 55, 253, 292, 324, 537
Hpy188III	TCNNGA	4 cut(s)	29, 203, 478, 524
Hpy8I	GTNNAC	2 cut(s)	49, 513
HpyAV	CCTTC	5 cut(s)	114, 319, 329, 364, 368
HpyCH4III	ACNGT	2 cut(s)	307, 399
HpyCH4V	TGCA	6 cut(s)	71, 86, 221, 262, 385, 621
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 335, 589
HpyF3I	CTNAG	2 cut(s)	507, 561
Hsp92II	CATG	2 cut(s)	433, 464
Kzo9I	GATC	4 cut(s)	31, 136, 433, 565
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	285, 567
LweI	GCATC	4 cut(s)	14, 73, 182, 208
MaeI	CTAG	1 cut(s)	131
MalI	GATC	4 cut(s)	33, 138, 435, 567
MboI	GATC	4 cut(s)	31, 136, 433, 565
MboII	GAAGA	1 cut(s)	563
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	622
MlyI	GAGTC	3 cut(s)	259, 541, 590
Mph1103I	ATGCAT	1 cut(s)	88
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	68, 335, 589
NdeII	GATC	4 cut(s)	31, 136, 433, 565
NlaIII	CATG	2 cut(s)	433, 464
NsiI	ATGCAT	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	237
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	25, 350, 481, 656
PkrI	GCNGC	3 cut(s)	275, 278, 582
PleI	GAGTC	3 cut(s)	259, 540, 590
PpsI	GAGTC	3 cut(s)	259, 540, 590
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	645
RsaNI	GTAC	1 cut(s)	644
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	274, 277, 581
Sau3AI	GATC	4 cut(s)	31, 136, 433, 565
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	3 cut(s)	259, 541, 590
SfaNI	GCATC	4 cut(s)	14, 73, 182, 208
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	622
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	131
StuI	AGGCCT	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	168, 662
TaaI	ACNGT	2 cut(s)	307, 399
TasI	AATT	1 cut(s)	622
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	4 cut(s)	25, 350, 481, 656
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	404
TseI	GCWGC	2 cut(s)	273, 580
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	592
TspRI	CASTG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.