Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

3440330 .. 3442492

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1041300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCATCACAACTTGGTAGTTTCTTTCGAGATCAGGATCTCAGCGTTCAAGCTAACGGAGCATCTCTTGTGGGGAAGGTTGGTGGCTTGAAATCACAAAGGAAAGCGGGGCTTGGTGGCAGGAAACCGCTTGGTGATCTATCGAATTCAGGGAAGCCTGCTGCTCTGATCCAGGCATTACAAAAGCAGCCTTCCAAGGAAATCATTTGTGATGATTCAAGCAATAAGAAAGGCTTGTCTAAAGTCTCGGATACAGTTCAGACTCGTAGCAGGACGGCGCTAATTGACATTTCAAACAGACAGAATGAACAGGGGCAGAAGAAGAAGCACAACACAAGGCAGGTGAGTGATGTGGCAGAGGGGCATCTTTGTCTTAATGATGTTTCAGGGGAAGGATTTCTGCACAATCATGAAGAGTGCATTAAAGAACAGACCAAGAGTATGGACATGGATCAGTTTCTGATGACACTTGGACTAGATAATGGTTCTTCCAAGAAGCTTTCATTTCAAAGTGCACCTCCTCTGCCAAGGAAACATGATCCCAAGAGTCCCCCGAGGGAGTGGGATTTGGAAGAGATGCCTGAGCATGATTTCCCCTGGCTGTCTGACAAGCTTGACTCTCCACCTCGTTGCAAGTCTCCAAAGTCACTAAATTGCAATGCTGATTCCCTTTTGATTTGGGACGACTGTGACTTCAAGCTGATGGAAACACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.28

Weight (kDa)

7.0

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	331
AciI	CCGC	2 cut(s)	107, 128
AclWI	GGATC	4 cut(s)	45, 163, 459, 533
AcsI	RAATTY	1 cut(s)	145
AgsI	TTSAA	6 cut(s)	50, 91, 219, 294, 509, 697
AjnI	CCWGG	2 cut(s)	171, 596
AluBI	AGCT	4 cut(s)	53, 499, 613, 700
AluI	AGCT	4 cut(s)	53, 499, 613, 700
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	250, 642
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	4 cut(s)	45, 163, 459, 533
AlwNI	CAGNNNCTG	1 cut(s)	460
Ama87I	CYCGRG	1 cut(s)	553
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	2 cut(s)	161, 187
ApoI	RAATTY	1 cut(s)	145
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	146, 355
AvaI	CYCGRG	1 cut(s)	553
BaeGI	GKGCMC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	2 cut(s)	148, 199
BccI	CCATC	1 cut(s)	697
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	2 cut(s)	173, 598
BciVI	GTATCC	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	250, 642
BfaI	CTAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	162, 188
BlsI	GCNGC	2 cut(s)	163, 189
Bme1390I	CCNGG	2 cut(s)	173, 598
BmeT110I	CYCGRG	1 cut(s)	553
BmrFI	CCNGG	2 cut(s)	173, 598
BmsI	GCATC	4 cut(s)	14, 71, 373, 567
Bpu10I	CCTNAGC	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	195, 527, 554, 596
Bse3DI	GCAATG	1 cut(s)	664
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	173, 598
BseDI	CCNNGG	4 cut(s)	195, 527, 554, 596
BseJI	GATNNNNATC	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	55, 573
BseRI	GAGGAG	1 cut(s)	510
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	148, 199
BsgI	GTGCAG	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	553
BslFI	GGGAC	2 cut(s)	534, 695
BsmAI	GTCTC	2 cut(s)	250, 642
BsmFI	GGGAC	2 cut(s)	534, 695
BsoBI	CYCGRG	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	6 cut(s)	31, 37, 136, 168, 451, 538
BspACI	CCGC	2 cut(s)	107, 128
BspCNI	CTCAG	2 cut(s)	54, 574
BspHI	TCATGA	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	4 cut(s)	45, 163, 459, 533
BsrDI	GCAATG	1 cut(s)	664
BssECI	CCNNGG	4 cut(s)	195, 527, 554, 596
BssMI	GATC	6 cut(s)	31, 37, 136, 168, 451, 538
BssT1I	CCWWGG	2 cut(s)	195, 527
Bst2UI	CCWGG	2 cut(s)	173, 598
Bst4CI	ACNGT	2 cut(s)	256, 689
Bst6I	CTCTTC	2 cut(s)	408, 567
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	41, 582
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	6 cut(s)	34, 40, 139, 171, 454, 541
BstMAI	GTCTC	2 cut(s)	250, 642
BstMBI	GATC	6 cut(s)	31, 37, 136, 168, 451, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	173, 598
BstSCI	CCNGG	2 cut(s)	171, 596
BstSLI	GKGCMC	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	148, 199
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	460
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	1 cut(s)	280
CviAII	CATG	4 cut(s)	410, 448, 536, 587
DdeI	CTNAG	2 cut(s)	41, 582
DpnI	GATC	6 cut(s)	33, 39, 138, 170, 453, 540
DpnII	GATC	6 cut(s)	31, 37, 136, 168, 451, 538
Eam1104I	CTCTTC	2 cut(s)	408, 567
EarI	CTCTTC	2 cut(s)	408, 567
Eco130I	CCWWGG	2 cut(s)	195, 527
Eco88I	CYCGRG	1 cut(s)	553
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	171, 596
EcoT14I	CCWWGG	2 cut(s)	195, 527
ErhI	CCWWGG	2 cut(s)	195, 527
FaeI	CATG	4 cut(s)	413, 451, 539, 590
FaiI	YATR	6 cut(s)	411, 443, 449, 537, 588, 715
FalI	AAGNNNNNCTT	4 cut(s)	96, 128, 218, 250
FaqI	GGGAC	2 cut(s)	534, 695
FatI	CATG	4 cut(s)	409, 447, 535, 586
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	162, 188
Fsp4HI	GCNGC	2 cut(s)	162, 188
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	162, 188
HaeII	RGCGCY	1 cut(s)	281
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	4 cut(s)	413, 451, 539, 590
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	2 cut(s)	497, 611
HinfI	GANTC	5 cut(s)	215, 262, 547, 617, 665
HphI	GGTGA	2 cut(s)	146, 355
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	5 cut(s)	168, 250, 261, 462, 607
Hpy188III	TCNNGA	3 cut(s)	29, 35, 410
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	3 cut(s)	70, 201, 386
HpyCH4III	ACNGT	2 cut(s)	256, 689
HpyCH4V	TGCA	5 cut(s)	403, 420, 515, 633, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	2 cut(s)	41, 582
Hsp92II	CATG	4 cut(s)	413, 451, 539, 590
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	6 cut(s)	31, 37, 136, 168, 451, 538
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	148, 199
LweI	GCATC	4 cut(s)	14, 71, 373, 567
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	645, 689
MalI	GATC	6 cut(s)	33, 39, 138, 170, 453, 540
MboI	GATC	6 cut(s)	31, 37, 136, 168, 451, 538
MboII	GAAGA	5 cut(s)	331, 334, 425, 480, 584
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	3 cut(s)	145, 282, 652
MlyI	GAGTC	3 cut(s)	256, 556, 611
MnlI	CCTC	5 cut(s)	352, 528, 531, 549, 636
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	2 cut(s)	375, 423
MslI	CAYNNNNRTG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	173, 598
MvaI	CCWGG	2 cut(s)	173, 598
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	6 cut(s)	31, 37, 136, 168, 451, 538
NlaIII	CATG	4 cut(s)	413, 451, 539, 590
NmuCI	GTSAC	2 cut(s)	645, 689
PagI	TCATGA	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	215, 665
PkrI	GCNGC	2 cut(s)	163, 189
PleI	GAGTC	3 cut(s)	256, 555, 611
PpsI	GAGTC	3 cut(s)	256, 555, 611
Psp6I	CCWGG	2 cut(s)	171, 596
PspGI	CCWGG	2 cut(s)	171, 596
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	375, 423
SatI	GCNGC	2 cut(s)	162, 188
Sau3AI	GATC	6 cut(s)	31, 37, 136, 168, 451, 538
SchI	GAGTC	3 cut(s)	256, 556, 611
ScrFI	CCNGG	2 cut(s)	173, 598
SduI	GDGCHC	1 cut(s)	517
SetI	ASST	8 cut(s)	55, 81, 345, 501, 520, 615, 628, 702
SfaNI	GCATC	4 cut(s)	14, 71, 373, 567
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	3 cut(s)	145, 282, 652
SsiI	CCGC	2 cut(s)	107, 128
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	171, 596
StyI	CCWWGG	2 cut(s)	195, 527
TaaI	ACNGT	2 cut(s)	256, 689
TaqI	TCGA	2 cut(s)	28, 143
TasI	AATT	3 cut(s)	145, 282, 652
TfiI	GAWTC	2 cut(s)	215, 665
Tru1I	TTAA	2 cut(s)	375, 423
Tru9I	TTAA	2 cut(s)	375, 423
TseFI	GTSAC	2 cut(s)	645, 689
TseI	GCWGC	2 cut(s)	161, 187
Tsp45I	GTSAC	2 cut(s)	645, 689
TspDTI	ATGAA	3 cut(s)	321, 426, 492
TspGWI	ACGGA	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	513
XapI	RAATTY	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.