Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

28026339 .. 28027591

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG282200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCATCAAAAGTAGTTCGTTTGATTCAGGATCAGAACCTCAATGTTCACTCTGATGGAGCTTCAGTTGCGGGAAAGGGTGATGCATTCAAATCAACCAAGAAAGGGGGACTTGGTGGAAGGAAACCTCTAGGAGATCTATCAAATAGGGGAAAGCCTGATTTTACCAAGGCATCAAAAAAGCCTGCTCTCACCAATGTCCCTGAAATCATTGCTGATGCAAGCAATAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAGCCGCAAGGCACTATCTGATGTGTCTAACACAGTGAAACCACCCCTTCAGAAGACTTCAAGTGCTGTGGCAGAGGAATCATCTTGTGATTTTGAGAAGGAAGGTTTCCTGCACGACCATAAACAGTGCATCAAAGCAATGAGAGAGGCTACCCACATGGATCAAATGGATATATTTAGGATGATACATGGACCAAATCCATTCAAGATTCTTTCATCTCCACCAAAAGCTTCTCAGTTTACCAAAGTTGAGGAGAGTCTGACCATGTACTTGGAAGAGATACCTGAGGATCAATCCACCTTGCTGCCTATCAAGCAGGACTCCTCCGTCTCCTCACCTCCTTGCAATTCTCCACCTCTATCACCAGTACGCTATACCGATTCCCCTTGGATTTGGGAGGAGTGTGATTTTCAGGTGATGGGAACACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

234

Amino Acids

25.54

Weight (kDa)

8.58

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
AciI	CCGC	2 cut(s)	71, 277
AclWI	GGATC	3 cut(s)	39, 441, 570
AcuI	CTGAAG	2 cut(s)	48, 305
AfaI	GTAC	2 cut(s)	542, 642
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	91, 333, 478
AluBI	AGCT	2 cut(s)	62, 503
AluI	AGCT	2 cut(s)	62, 503
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	3 cut(s)	39, 441, 570
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	273, 577
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	5 cut(s)	92, 184, 600, 627, 700
AvaII	GGWCC	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	558
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	285, 564
BccI	CCATC	2 cut(s)	50, 685
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	1 cut(s)	131
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	3 cut(s)	274, 277, 578
BlsI	GCNGC	3 cut(s)	275, 278, 579
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmsI	GCATC	5 cut(s)	14, 73, 182, 208, 411
BpiI	GAAGAC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	168, 249, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	638
Bse21I	CCTNAGG	1 cut(s)	558
Bse3DI	GCAATG	2 cut(s)	210, 417
BseDI	CCNNGG	3 cut(s)	168, 249, 659
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	2 cut(s)	210, 417
BseMII	CTCAG	2 cut(s)	521, 549
BseNI	ACTGG	1 cut(s)	638
BseRI	GAGGAG	4 cut(s)	539, 586, 595, 686
BseXI	GCAGC	2 cut(s)	285, 564
BsgI	GTGCAG	2 cut(s)	281, 368
BshFI	GGCC	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	123, 185
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	607
BsmBI	CGTCTC	1 cut(s)	607
BsmFI	GGGAC	2 cut(s)	123, 185
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	31, 136, 433, 562
BspACI	CCGC	2 cut(s)	71, 277
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	520, 550
BspPI	GGATC	3 cut(s)	39, 441, 570
BsrDI	GCAATG	2 cut(s)	210, 417
BsrI	ACTGG	1 cut(s)	638
BssECI	CCNNGG	3 cut(s)	168, 249, 659
BssMI	GATC	4 cut(s)	31, 136, 433, 562
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	168, 659
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	307, 399
Bst6I	CTCTTC	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	186, 223
BstDEI	CTNAG	2 cut(s)	507, 558
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	4 cut(s)	34, 139, 436, 565
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	4 cut(s)	31, 136, 433, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 586
BstV1I	GCAGC	2 cut(s)	285, 564
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	312, 404
Cac8I	GCNNGC	2 cut(s)	186, 223
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	541, 641
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	3 cut(s)	430, 461, 538
CviJI	RGCY	8 cut(s)	62, 157, 184, 237, 248, 276, 422, 503
CviKI_1	RGCY	8 cut(s)	62, 157, 184, 237, 248, 276, 422, 503
CviQI	GTAC	2 cut(s)	541, 641
DdeI	CTNAG	2 cut(s)	507, 558
DpnI	GATC	4 cut(s)	33, 138, 435, 564
DpnII	GATC	4 cut(s)	31, 136, 433, 562
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco130I	CCWWGG	2 cut(s)	168, 659
Eco147I	AGGCCT	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	48, 305
Eco81I	CCTNAGG	1 cut(s)	558
EcoT14I	CCWWGG	2 cut(s)	168, 659
EcoT22I	ATGCAT	1 cut(s)	88
ErhI	CCWWGG	2 cut(s)	168, 659
Esp3I	CGTCTC	1 cut(s)	607
FaeI	CATG	3 cut(s)	433, 464, 541
FaiI	YATR	7 cut(s)	393, 431, 446, 462, 539, 648, 703
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	2 cut(s)	123, 185
FatI	CATG	3 cut(s)	429, 460, 537
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	274, 277, 578
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	3 cut(s)	274, 277, 578
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	3 cut(s)	274, 277, 578
HaeIII	GGCC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	433, 464, 541
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	7 cut(s)	25, 265, 350, 481, 529, 593, 653
HphI	GGTGA	5 cut(s)	92, 184, 600, 627, 700
Hpy166II	GTNNAC	2 cut(s)	49, 513
Hpy188I	TCNGA	6 cut(s)	36, 55, 253, 292, 324, 534
Hpy188III	TCNNGA	2 cut(s)	29, 478
Hpy8I	GTNNAC	2 cut(s)	49, 513
HpyAV	CCTTC	4 cut(s)	114, 329, 364, 368
HpyCH4III	ACNGT	2 cut(s)	307, 399
HpyCH4V	TGCA	6 cut(s)	86, 221, 262, 385, 402, 618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 586
HpyF3I	CTNAG	2 cut(s)	507, 558
Hsp92II	CATG	3 cut(s)	433, 464, 541
Kzo9I	GATC	4 cut(s)	31, 136, 433, 562
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	9 cut(s)	14, 171, 198, 216, 395, 570, 575, 651, 671
Lsp1109I	GCAGC	2 cut(s)	285, 564
LweI	GCATC	5 cut(s)	14, 73, 182, 208, 411
MaeI	CTAG	1 cut(s)	131
MalI	GATC	4 cut(s)	33, 138, 435, 564
MboI	GATC	4 cut(s)	31, 136, 433, 562
MboII	GAAGA	2 cut(s)	337, 560
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	619
MlyI	GAGTC	3 cut(s)	259, 538, 587
Mph1103I	ATGCAT	1 cut(s)	88
MslI	CAYNNNNRTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	68, 586
NdeII	GATC	4 cut(s)	31, 136, 433, 562
NlaIII	CATG	3 cut(s)	433, 464, 541
NsiI	ATGCAT	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	237
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	25, 350, 481, 653
PkrI	GCNGC	3 cut(s)	275, 278, 579
PleI	GAGTC	3 cut(s)	259, 537, 587
PpsI	GAGTC	3 cut(s)	259, 537, 587
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	2 cut(s)	542, 642
RsaNI	GTAC	2 cut(s)	541, 641
RseI	CAYNNNNRTG	1 cut(s)	54
SatI	GCNGC	3 cut(s)	274, 277, 578
Sau3AI	GATC	4 cut(s)	31, 136, 433, 562
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	3 cut(s)	259, 538, 587
SfaNI	GCATC	5 cut(s)	14, 73, 182, 208, 411
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	619
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	2 cut(s)	71, 277
SspMI	CTAG	1 cut(s)	131
StuI	AGGCCT	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	168, 659
TaaI	ACNGT	2 cut(s)	307, 399
TasI	AATT	1 cut(s)	619
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	4 cut(s)	25, 350, 481, 653
TscAI	CASTG	2 cut(s)	312, 404
TseI	GCWGC	2 cut(s)	273, 577
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	2 cut(s)	312, 404
VpaK11BI	GGWCC	1 cut(s)	464
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.