Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Forward (+)

23414896 .. 23417128

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCATCAAAACTTCTTCGTTTGGTGCAAGATCAGAACCTCAATGTTCACTCTGATGGAGCTTCTGTTGCGGGAAAGGGAGCATTCAAATCAACAAAGAAAGGTGGACTTGCTGGAAGGAAACCTTTGGGAGACCTATCAAATAGGGGGAAGCCTGATTTCACCAAGGCAACAAGAAAGCCTGCTCTGAACAATTTTCCCGAAATCATTGCTGATGCAAGCAATAGGAAAGGCATATCTAAAACCTCTGGTAAAGTGAAGACTAGAAGCATCCGAAAGCCTCTAAATGATGTGTCTAATTACACAGTGAAGCCACGGCTTCAGAAGACTTCTATTGTTGTGTCAGAGGCATCTTCTTGTGAGTATGAGAACGAAGGTTTCCTTCATGACCATAGCCTGTGCATCAAAGCAAGGAGAGAGGCTTCGGAGATGGAACAAATGGATATATTTTGGATGATAAATGGACCAACTCCATCCAAGAACCTCTCATCTCCACCAAAACCTTCTCAGTTAACTGAAGTGGAGCAGGAGAGTGCAGCTGAGTACTTGAAAGAGATACCTGAGGATCAATACACCTTGCTTCCAATCACGCGGGACTCAGTCTCTTCACCTCCTTGTTCTCCACTTCCATCACCAGATCGCTATACCAATTTGCATCCGATTTGGGAGGACTGTGATTTTCAGGTGATGGAATCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

234

Amino Acids

25.77

Weight (kDa)

8.58

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	592
AciI	CCGC	2 cut(s)	71, 592
AclWI	GGATC	1 cut(s)	573
AcuI	CTGAAG	2 cut(s)	305, 537
AfaI	GTAC	1 cut(s)	545
AgsI	TTSAA	2 cut(s)	88, 550
AluBI	AGCT	2 cut(s)	62, 539
AluI	AGCT	2 cut(s)	62, 539
Alw26I	GTCTC	2 cut(s)	126, 607
AlwI	GGATC	1 cut(s)	573
ApeKI	GCWGC	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	5 cut(s)	154, 600, 624, 687, 697
AvaII	GGWCC	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	561
BbsI	GAAGAC	2 cut(s)	266, 332
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	5 cut(s)	50, 424, 481, 637, 682
BceAI	ACGGC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcoDI	GTCTC	2 cut(s)	126, 607
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
BmcAI	AGTACT	1 cut(s)	545
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmsI	GCATC	6 cut(s)	14, 205, 279, 359, 411, 664
BpiI	GAAGAC	2 cut(s)	266, 332
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	165, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	165, 314
BseGI	GGATG	4 cut(s)	270, 459, 473, 655
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	4 cut(s)	521, 531, 552, 612
BseXI	GCAGC	1 cut(s)	548
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	592
BslFI	GGGAC	1 cut(s)	608
BsmAI	GTCTC	2 cut(s)	126, 607
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	31, 565, 637
BspACI	CCGC	2 cut(s)	71, 592
BspCNI	CTCAG	4 cut(s)	520, 532, 553, 611
BspFNI	CGCG	1 cut(s)	592
BspHI	TCATGA	1 cut(s)	385
BspPI	GGATC	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	165, 314
BssMI	GATC	3 cut(s)	31, 565, 637
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	307, 674
Bst6I	CTCTTC	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	183, 220
BstDEI	CTNAG	4 cut(s)	507, 540, 561, 598
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	4 cut(s)	270, 459, 473, 655
BstFNI	CGCG	1 cut(s)	592
BstKTI	GATC	3 cut(s)	34, 568, 640
BstMAI	GTCTC	2 cut(s)	126, 607
BstMBI	GATC	3 cut(s)	31, 565, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	548
BstV2I	GAAGAC	2 cut(s)	266, 332
Bsu36I	CCTNAGG	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	314
BtsCI	GGATG	4 cut(s)	270, 459, 473, 655
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	183, 220
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	9 cut(s)	62, 154, 181, 280, 313, 319, 396, 422, 539
CviKI_1	RGCY	9 cut(s)	62, 154, 181, 280, 313, 319, 396, 422, 539
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	4 cut(s)	507, 540, 561, 598
DpnI	GATC	3 cut(s)	33, 567, 639
DpnII	GATC	3 cut(s)	31, 565, 637
Eam1104I	CTCTTC	1 cut(s)	610
EarI	CTCTTC	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	305, 537
Eco81I	CCTNAGG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	389
FaiI	YATR	7 cut(s)	236, 366, 387, 393, 446, 645, 700
FalI	AAGNNNNNCTT	6 cut(s)	93, 125, 109, 141, 366, 398
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	1 cut(s)	385
FauI	CCCGC	2 cut(s)	64, 585
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	4 cut(s)	257, 460, 466, 642
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	1 cut(s)	537
Hin1II	CATG	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	2 cut(s)	596, 692
HpaI	GTTAAC	1 cut(s)	513
HphI	GGTGA	5 cut(s)	154, 600, 624, 687, 697
Hpy166II	GTNNAC	3 cut(s)	49, 107, 513
Hpy188I	TCNGA	8 cut(s)	36, 55, 189, 275, 324, 346, 427, 660
Hpy188III	TCNNGA	2 cut(s)	200, 386
Hpy8I	GTNNAC	3 cut(s)	49, 107, 513
HpyAV	CCTTC	4 cut(s)	111, 368, 392, 513
HpyCH4III	ACNGT	2 cut(s)	307, 674
HpyCH4V	TGCA	5 cut(s)	28, 218, 402, 536, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	4 cut(s)	507, 540, 561, 598
Hsp92II	CATG	1 cut(s)	389
KspAI	GTTAAC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	31, 565, 637
LmnI	GCTCC	3 cut(s)	59, 80, 523
LpnPI	CCDG	9 cut(s)	99, 168, 195, 234, 410, 512, 573, 648, 668
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	6 cut(s)	14, 205, 279, 359, 411, 664
MaeI	CTAG	1 cut(s)	264
MalI	GATC	3 cut(s)	33, 567, 639
MboI	GATC	3 cut(s)	31, 565, 637
MboII	GAAGA	5 cut(s)	8, 271, 337, 345, 597
MluCI	AATT	3 cut(s)	193, 298, 649
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	9 cut(s)	50, 256, 291, 340, 412, 494, 556, 621, 661
MseI	TTAA	1 cut(s)	512
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	83
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	3 cut(s)	31, 565, 637
NlaIII	CATG	1 cut(s)	389
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	692
PflFI	GACNNNGTC	1 cut(s)	599
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	464
PsyI	GACNNNGTC	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	3 cut(s)	31, 565, 637
Sau96I	GGNCC	1 cut(s)	464
ScaI	AGTACT	1 cut(s)	545
SchI	GAGTC	1 cut(s)	590
SfaNI	GCATC	6 cut(s)	14, 205, 279, 359, 411, 664
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	193, 298, 649
SsiI	CCGC	2 cut(s)	71, 592
SspMI	CTAG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	307, 674
TasI	AATT	3 cut(s)	193, 298, 649
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	692
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	1 cut(s)	536
TspDTI	ATGAA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	312
Tth111I	GACNNNGTC	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	464
XspI	CTAG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.