Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Forward (+)

29386032 .. 29388212

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCACCAAAAGTTGTTCGTTTCGTGCAGGATCAGAACCTCAATGTTCACTCTGCTGGAGTTTCTGTTGCGGGAAAGGGTGATGCATCCAAATCAACAAAGAAAGGCAGACTTGGTGGAAGGAAACCTTTGGGAGACCTATCCAATAGGGGGAAGCCTGATATGGTTAGCAAGGCATCAAGAAAGCCTGCTCTCACCAATTTTCCTGAAATCATTGCTGATGCAAGCAATAAGAAAGGCTTATCTAAGACATCTGGTAAAGTGCAGACCAAGCGAAAGCCTCTAACTGACGTGTCCAATTACACAGTGAAACCACAAACTTCTACTGTTGTGAAAGAGGAATCTTGTTGTAATTATGAGAAGGAAGGTTTCCTGCATGACCATGAACAGTGCGTTAAAGCAATGAGAGAGGGTACCCAGATGGATGAAATGGATATATTTCTGATGATAAATGGACCAACTCCATCCAAGCAGCTTTCATCTCCACCAAAAGCTTCCGAGTTAACCAAATTTGAGCAGGAGTGTCTAATAACATACTTGAAAGAGATACCTGAGGATCAATACACCTTGCTGCCTATCATGAAGGATTCAGTTTCCTCACCCTTTTGTTCTCCACTTCCTTCACCAGATCACTATACCAACTTGCTATCTGGGGAGGACTGTGATTTTCAGCTGATGGAATCGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

230

Amino Acids

25.2

Weight (kDa)

8.13

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	2 cut(s)	4, 413
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	39, 564
AcsI	RAATTY	1 cut(s)	509
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	541
AjiI	CACGTC	1 cut(s)	292
AluBI	AGCT	3 cut(s)	475, 494, 673
AluI	AGCT	3 cut(s)	475, 494, 673
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	39, 564
ApeKI	GCWGC	2 cut(s)	472, 571
ApoI	RAATTY	1 cut(s)	509
Asp718I	GGTACC	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	4 cut(s)	92, 187, 591, 615
AvaII	GGWCC	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	552
BanI	GGYRCC	2 cut(s)	4, 413
BbvI	GCAGC	2 cut(s)	484, 558
BccI	CCATC	3 cut(s)	415, 472, 670
BcoDI	GTCTC	1 cut(s)	129
BisI	GCNGC	2 cut(s)	473, 572
BlsI	GCNGC	2 cut(s)	474, 573
Bme18I	GGWCC	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	6, 415
BmsI	GCATC	4 cut(s)	73, 95, 185, 211
BpmI	CTGGAG	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	2 cut(s)	213, 408
BseGI	GGATG	3 cut(s)	86, 430, 464
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	2 cut(s)	213, 408
BseMII	CTCAG	1 cut(s)	543
BseXI	GCAGC	2 cut(s)	484, 558
BsgI	GTGCAG	2 cut(s)	47, 284
BshNI	GGYRCC	2 cut(s)	4, 413
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	31, 556, 628
BspACI	CCGC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	2 cut(s)	6, 415
BspPI	GGATC	2 cut(s)	39, 564
BspT107I	GGYRCC	2 cut(s)	4, 413
BspTNI	GGTCTC	1 cut(s)	129
BsrDI	GCAATG	2 cut(s)	213, 408
BssMI	GATC	3 cut(s)	31, 556, 628
Bst4CI	ACNGT	4 cut(s)	307, 328, 390, 662
BstC8I	GCNNGC	2 cut(s)	189, 226
BstDEI	CTNAG	2 cut(s)	246, 552
BstF5I	GGATG	3 cut(s)	86, 430, 464
BstKTI	GATC	3 cut(s)	34, 559, 631
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	3 cut(s)	31, 556, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	484, 558
Bsu36I	CCTNAGG	1 cut(s)	552
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	3 cut(s)	86, 430, 464
BtsIMutI	CAGTG	2 cut(s)	312, 395
Cac8I	GCNNGC	2 cut(s)	189, 226
CciI	TCATGA	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	3 cut(s)	377, 383, 580
CviJI	RGCY	7 cut(s)	157, 187, 240, 280, 475, 494, 673
CviKI_1	RGCY	7 cut(s)	157, 187, 240, 280, 475, 494, 673
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	2 cut(s)	246, 552
DpnI	GATC	3 cut(s)	33, 558, 630
DpnII	GATC	3 cut(s)	31, 556, 628
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	455
Eco81I	CCTNAGG	1 cut(s)	552
EcoT22I	ATGCAT	1 cut(s)	88
FaeI	CATG	3 cut(s)	380, 386, 583
FaiI	YATR	9 cut(s)	164, 357, 378, 384, 437, 535, 581, 636, 688
FalI	AAGNNNNNCTT	6 cut(s)	96, 128, 112, 144, 224, 256
FatI	CATG	3 cut(s)	376, 382, 579
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	473, 572
FokI	GGATG	3 cut(s)	73, 437, 451
Fsp4HI	GCNGC	2 cut(s)	473, 572
GluI	GCNGC	2 cut(s)	473, 572
GsuI	CTGGAG	1 cut(s)	78
Hin1II	CATG	3 cut(s)	380, 386, 583
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	3 cut(s)	341, 587, 680
HpaI	GTTAAC	1 cut(s)	504
HphI	GGTGA	4 cut(s)	92, 187, 591, 615
Hpy166II	GTNNAC	2 cut(s)	49, 504
Hpy188I	TCNGA	3 cut(s)	36, 444, 499
Hpy188III	TCNNGA	3 cut(s)	180, 206, 580
Hpy8I	GTNNAC	2 cut(s)	49, 504
HpyAV	CCTTC	5 cut(s)	114, 355, 359, 577, 630
HpyCH4III	ACNGT	4 cut(s)	307, 328, 390, 662
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	5 cut(s)	28, 86, 224, 265, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	2 cut(s)	246, 552
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	380, 386, 583
KpnI	GGTACC	1 cut(s)	417
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	3 cut(s)	31, 556, 628
Lsp1109I	GCAGC	2 cut(s)	484, 558
LweI	GCATC	4 cut(s)	73, 95, 185, 211
MaeII	ACGT	1 cut(s)	291
MalI	GATC	3 cut(s)	33, 558, 630
MboI	GATC	3 cut(s)	31, 556, 628
MluCI	AATT	4 cut(s)	199, 298, 352, 509
MnlI	CCTC	7 cut(s)	50, 291, 331, 403, 547, 607, 649
Mph1103I	ATGCAT	1 cut(s)	88
MseI	TTAA	2 cut(s)	396, 503
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	673
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	3 cut(s)	31, 556, 628
NlaIII	CATG	3 cut(s)	380, 386, 583
NlaIV	GGNNCC	2 cut(s)	6, 415
NsiI	ATGCAT	1 cut(s)	88
PagI	TCATGA	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	341, 587, 680
PkrI	GCNGC	2 cut(s)	474, 573
PspN4I	GGNNCC	2 cut(s)	6, 415
PspPI	GGNCC	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	673
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	396, 503
SatI	GCNGC	2 cut(s)	473, 572
Sau3AI	GATC	3 cut(s)	31, 556, 628
Sau96I	GGNCC	1 cut(s)	455
SfaNI	GCATC	4 cut(s)	73, 95, 185, 211
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	4 cut(s)	199, 298, 352, 509
SsiI	CCGC	1 cut(s)	71
TaaI	ACNGT	4 cut(s)	307, 328, 390, 662
TaiI	ACGT	1 cut(s)	294
TasI	AATT	4 cut(s)	199, 298, 352, 509
TfiI	GAWTC	3 cut(s)	341, 587, 680
Tru1I	TTAA	2 cut(s)	396, 503
Tru9I	TTAA	2 cut(s)	396, 503
TscAI	CASTG	2 cut(s)	312, 395
TseI	GCWGC	2 cut(s)	472, 571
TspDTI	ATGAA	4 cut(s)	399, 441, 468, 596
TspRI	CASTG	2 cut(s)	312, 395
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	1 cut(s)	509
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.