Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

14346646 .. 14348528

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCATCAACAATTGGTCGTTTGTTTCAAGATCAGAATCTCAGTGTTCACTCTAATGGAAATTCTGCTGTAGGAAAGGGTGGTGCAAAAACACAGAAGAAAGCTGGGTTTGGTGGAAGGAAACCTCTAGTAGATGTATCGAACACTGGGGAGCCTGATTTTTCCAAGGTATCGAAAAAGCCTGCTCTTACCAATGTTTCTGAAATCATTGCTGATGCAAGCAACAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTTGTGGCAGTCGGAAGGCACTATCTGATGTGTCTAACACAGTCAAGCCACCTCTGCATAAGAAGTCAAGTGTTGCGGCACAACCACCTTGTGGTTTTGAGGAGGAAGGTTTCCTGCATGACCATCAACAGTGCATCAAATCTATGAGAAAGGCTAATCACATGGATCAAATGGATTTTTTTATGATGATACAAGGATCAGATTCATCCAAGAAGCTTCTGTCTCCATGTGCACTGGATGGTCCCATGAAGTACTTGGATTTGAAAGAGATGCCTGAGCTGTCTATCAAGCTTGACTCTTCACCTCATTGCAAGTCTCCACTCTCACCAAATCATACCAAGTCCACTTGGGTTTGGGATGATTGTGATTTTCAGGTGATGGAAACACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

217

Amino Acids

23.58

Weight (kDa)

8.82

Isoelectric Point (pI)

25.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	2 cut(s)	435, 466
AcsI	RAATTY	1 cut(s)	61
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	29, 526
AluBI	AGCT	4 cut(s)	104, 478, 541, 553
AluI	AGCT	4 cut(s)	104, 478, 541, 553
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	2 cut(s)	489, 582
Alw44I	GTGCAC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	435, 466
AoxI	GGCC	1 cut(s)	232
ApaLI	GTGCAC	1 cut(s)	492
ApoI	RAATTY	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	3 cut(s)	555, 579, 649
AvaII	GGWCC	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	496
BccI	CCATC	3 cut(s)	393, 494, 634
BcoDI	GTCTC	2 cut(s)	489, 582
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	2 cut(s)	153, 505
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	4 cut(s)	14, 205, 405, 522
BmuI	ACTGGG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	537
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	165, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	151, 501
Bse3DI	GCAATG	2 cut(s)	207, 568
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	165, 246
BseGI	GGATG	3 cut(s)	467, 505, 625
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	2 cut(s)	207, 568
BseMII	CTCAG	2 cut(s)	55, 528
BseNI	ACTGG	2 cut(s)	151, 501
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	496
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	489, 582
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	31, 427, 458
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	54, 529
BspLI	GGNNCC	2 cut(s)	153, 505
BspPI	GGATC	2 cut(s)	435, 466
BsrDI	GCAATG	2 cut(s)	207, 568
BsrI	ACTGG	2 cut(s)	151, 501
BssECI	CCNNGG	2 cut(s)	165, 246
BssMI	GATC	3 cut(s)	31, 427, 458
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	304, 393
Bst6I	CTCTTC	1 cut(s)	565
BstC8I	GCNNGC	2 cut(s)	183, 220
BstDEI	CTNAG	3 cut(s)	41, 537, 651
BstF5I	GGATG	3 cut(s)	467, 505, 625
BstKTI	GATC	3 cut(s)	34, 430, 461
BstMAI	GTCTC	2 cut(s)	489, 582
BstMBI	GATC	3 cut(s)	31, 427, 458
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	467, 505, 625
BtsIMutI	CAGTG	4 cut(s)	49, 144, 398, 494
Cac8I	GCNNGC	2 cut(s)	183, 220
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	4 cut(s)	380, 424, 489, 508
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	3 cut(s)	41, 537, 651
DpnI	GATC	3 cut(s)	33, 429, 460
DpnII	GATC	3 cut(s)	31, 427, 458
DraIII	CACNNNGTG	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	383, 427, 492, 511
FaiI	YATR	8 cut(s)	321, 381, 407, 425, 446, 490, 509, 597
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	4 cut(s)	379, 423, 488, 507
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	3 cut(s)	454, 512, 632
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	383, 427, 492, 511
HindIII	AAGCTT	2 cut(s)	476, 551
HinfI	GANTC	3 cut(s)	37, 464, 557
HphI	GGTGA	3 cut(s)	555, 579, 649
Hpy166II	GTNNAC	3 cut(s)	49, 494, 606
Hpy188I	TCNGA	6 cut(s)	36, 202, 250, 276, 289, 463
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	3 cut(s)	49, 494, 606
HpyAV	CCTTC	3 cut(s)	111, 271, 362
HpyCH4III	ACNGT	2 cut(s)	304, 393
HpyCH4V	TGCA	8 cut(s)	86, 218, 259, 319, 379, 396, 494, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	3 cut(s)	41, 537, 651
Hsp92II	CATG	4 cut(s)	383, 427, 492, 511
Kzo9I	GATC	3 cut(s)	31, 427, 458
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	8 cut(s)	90, 132, 168, 195, 389, 482, 549, 620
LweI	GCATC	4 cut(s)	14, 205, 405, 522
MaeI	CTAG	1 cut(s)	128
MalI	GATC	3 cut(s)	33, 429, 460
MboI	GATC	3 cut(s)	31, 427, 458
MboII	GAAGA	2 cut(s)	109, 552
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	2 cut(s)	12, 61
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	6 cut(s)	135, 256, 324, 355, 358, 576
MslI	CAYNNNNRTG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	3 cut(s)	31, 427, 458
NlaIII	CATG	4 cut(s)	383, 427, 492, 511
NlaIV	GGNNCC	2 cut(s)	153, 505
PceI	AGGCCT	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	37, 464
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
PspFI	CCCAGC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	153, 505
PspPI	GGNCC	1 cut(s)	503
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	54
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	3 cut(s)	31, 427, 458
Sau96I	GGNCC	1 cut(s)	503
ScaI	AGTACT	1 cut(s)	515
SchI	GAGTC	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	4 cut(s)	14, 205, 405, 522
SfcI	CTRYAG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	12, 61
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	304, 393
TaqI	TCGA	2 cut(s)	140, 173
TasI	AATT	2 cut(s)	12, 61
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	37, 464
TscAI	CASTG	4 cut(s)	49, 151, 398, 501
TspDTI	ATGAA	2 cut(s)	456, 524
TspRI	CASTG	4 cut(s)	49, 151, 398, 501
Van91I	CCANNNNNTGG	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.