Rh3DG279000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001257
Physical Location & Seq
Reverse (-)
28290068 .. 28292882
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG279000.1

Sequence Viewer

Length: 777 bp
ATGGCATCAACAATTGGTCGATTGTTTCAAGATCAGAACCTCAATGTTCACTCTAATGGAGATTCTGCTGTTGGAAAGGGTGGTGCAAAACAACAGAAGAAAGCAGGGTTTGGTGGAAGGAAACCTCTAGGAGATGTATCGAATACAGGGAAGCCTGATTTTACCAAGGTGTCGAAAAAGTCTGCTCTTACCAATGTTTCTGAAATCATTGCTGATGCAAGCAATAAGAAAGGCCTTTGTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAGCCGCAAGGCACTATCTGATGTGTCTAACACAGTCAAACCACCTGTGCACAAGAAGTCAAGTGTTGTGGCACAACCACCTTGTGGTTTTGAGGAAGAAGGATTCTTGCATGACCATCAACAGTGCATCAAATCTATGAGAAAGGCTAACCAAATGGATCAAATGGATTTTTTTATGACAATACAAGGATCAGATTCATCCAAGAAGCTTCTATCTCCCTGTGCAGTTTCTCAGTTTCGTAAAGTTGAGGTAAGTTTGCAATTCCTTTTTGTCATTTCCAGCACTTGCTTTGTCAGTATGGATCTTTCTAAACAATGCTGTTTTGTCATCATTCTTTTTTCGTTTCAGCCGGAGAGTTCCATGAGGTACTTGGATTTGAAAGAGATGCCTGAGCTGTCTATCAAGCTTGACTCTTCACCTCATTGCAAGTCTCCATTGTCACCAACTCATACCAAGTCCACTTGGATTTGGGATGATTGTGATTTTCAGGTGATGGAGACACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.43

Weight (kDa)

9.0

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 1 cut(s) 274
AclWI GGATC 3 cut(s) 435, 466, 579
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 2 cut(s) 29, 649
AluBI AGCT 3 cut(s) 478, 664, 676
AluI AGCT 3 cut(s) 478, 664, 676
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 705, 761
Alw44I GTGCAC 1 cut(s) 317
AlwI GGATC 3 cut(s) 435, 466, 579
AoxI GGCC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 678, 702, 772
BaeGI GKGCMC 1 cut(s) 321
BauI CACGAG 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 393, 757
BcoDI GTCTC 2 cut(s) 705, 761
BfaI CTAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 271, 274
BlsI GCNGC 2 cut(s) 272, 275
BmsI GCATC 4 cut(s) 14, 205, 405, 645
Bpu10I CCTNAGC 1 cut(s) 660
BsaJI CCNNGG 2 cut(s) 165, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse3DI GCAATG 2 cut(s) 207, 691
BseDI CCNNGG 2 cut(s) 165, 246
BseGI GGATG 2 cut(s) 467, 748
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 2 cut(s) 207, 691
BseMII CTCAG 2 cut(s) 515, 651
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 1 cut(s) 282
BsgI GTGCAG 2 cut(s) 278, 513
BshFI GGCC 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 620
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 705, 761
BsnI GGCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 4 cut(s) 31, 427, 458, 571
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 514, 652
BspPI GGATC 3 cut(s) 435, 466, 579
BsrDI GCAATG 2 cut(s) 207, 691
BssECI CCNNGG 2 cut(s) 165, 246
BssMI GATC 4 cut(s) 31, 427, 458, 571
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 304, 393
Bst6I CTCTTC 1 cut(s) 688
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 501, 660, 774
BstF5I GGATG 2 cut(s) 467, 748
BstKTI GATC 4 cut(s) 34, 430, 461, 574
BstMAI GTCTC 2 cut(s) 705, 761
BstMBI GATC 4 cut(s) 31, 427, 458, 571
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 467, 748
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 637
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 2 cut(s) 380, 631
CviJI RGCY 9 cut(s) 154, 234, 245, 273, 416, 478, 619, 664, 676
CviKI_1 RGCY 9 cut(s) 154, 234, 245, 273, 416, 478, 619, 664, 676
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 3 cut(s) 501, 660, 774
DpnI GATC 4 cut(s) 33, 429, 460, 573
DpnII GATC 4 cut(s) 31, 427, 458, 571
DraIII CACNNNGTG 1 cut(s) 353
Eam1104I CTCTTC 1 cut(s) 688
EarI CTCTTC 1 cut(s) 688
Eco130I CCWWGG 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 383, 634
FaiI YATR 6 cut(s) 381, 407, 446, 569, 632, 720
FatI CATG 2 cut(s) 379, 630
Fnu4HI GCNGC 2 cut(s) 271, 274
FokI GGATG 2 cut(s) 454, 755
Fsp4HI GCNGC 2 cut(s) 271, 274
FspBI CTAG 1 cut(s) 128
GluI GCNGC 2 cut(s) 271, 274
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 620
Hin1II CATG 2 cut(s) 383, 634
HindIII AAGCTT 2 cut(s) 476, 674
HinfI GANTC 5 cut(s) 62, 262, 372, 464, 680
HpaII CCGG 1 cut(s) 620
HphI GGTGA 3 cut(s) 678, 702, 772
Hpy166II GTNNAC 3 cut(s) 49, 319, 729
Hpy188I TCNGA 5 cut(s) 36, 202, 250, 289, 463
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 3 cut(s) 49, 319, 729
HpyAV CCTTC 2 cut(s) 111, 362
HpyCH4III ACNGT 2 cut(s) 304, 393
HpyCH4V TGCA 9 cut(s) 86, 218, 259, 319, 379, 396, 494, 529, 696
HpyF3I CTNAG 3 cut(s) 501, 660, 774
Hsp92II CATG 2 cut(s) 383, 634
Kzo9I GATC 4 cut(s) 31, 427, 458, 571
LpnPI CCDG 9 cut(s) 90, 132, 168, 327, 502, 562, 633, 672, 743
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 4 cut(s) 14, 205, 405, 645
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 708
MalI GATC 4 cut(s) 33, 429, 460, 573
MboI GATC 4 cut(s) 31, 427, 458, 571
MboII GAAGA 3 cut(s) 109, 377, 675
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 2 cut(s) 12, 530
MlyI GAGTC 2 cut(s) 256, 674
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 7 cut(s) 50, 135, 256, 355, 511, 627, 699
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 620
MunI CAATTG 1 cut(s) 12
NdeII GATC 4 cut(s) 31, 427, 458, 571
NlaIII CATG 2 cut(s) 383, 634
NmuCI GTSAC 1 cut(s) 708
PceI AGGCCT 1 cut(s) 234
PfeI GAWTC 3 cut(s) 62, 372, 464
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 2 cut(s) 272, 275
PleI GAGTC 2 cut(s) 256, 674
PpsI GAGTC 2 cut(s) 256, 674
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
RseI CAYNNNNRTG 1 cut(s) 54
SatI GCNGC 2 cut(s) 271, 274
Sau3AI GATC 4 cut(s) 31, 427, 458, 571
SchI GAGTC 2 cut(s) 256, 674
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 4 cut(s) 14, 205, 405, 645
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 2 cut(s) 12, 530
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 128
StuI AGGCCT 1 cut(s) 234
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 304, 393
TaqI TCGA 3 cut(s) 19, 140, 173
TasI AATT 2 cut(s) 12, 530
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 3 cut(s) 62, 372, 464
TscAI CASTG 1 cut(s) 398
TseFI GTSAC 1 cut(s) 708
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 1 cut(s) 398
Van91I CCANNNNNTGG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.