Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

8015192 .. 8017291

Gene Structure 2100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G043900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCATCACAAGTTGGTCGTGTGATTCACGATCAGAATCTTAATGTTCAATCTAATGGTGCTTCTGTTGTGGGAAAGGCTGATACAGTTAAAACACAAGGGAAAGGGGGCCTTGGTGGAAGGAAAGCGCTCGGTGATTTATCCAATTCTGGGAAGCCTGCACTCAATCAGGTATCGAAAAAGCAGCATTCCAAGAATTTTGCCACAGGAGCTTCTATTGTGGGAAAGGGTGATGTTTTAAAAACACAAATGAGAGGGCTTGGTGGAAGGAAACCGCTTGGTGACATATCGAATTCGGGGAAGCCTGTTCTTTCCCAGGCATCAAAAAAGCAGTCTTCCAAGAATGTTCCTGTCGTTGAGGAAGCGACCAGCCTTCCTAAAATCATTCATGATGCAAGCACTGGGAAAGGTGTTTTTAAAGCCTCAGAGAAGGTGCAGACCCATAGCAGGAATACGCTATCTCACATTTCAAACTCAGTGAAACCAAACCTGCAGAAGAACCACAGCATGAAGCTAAAGGTTATGGCAGAAGAACCTCTTTGTCCTAGTGCTATTGCAGAGGAAGGGTTCTTACACAATCATCAAGAATGCATCAAAGCACAGAACAAGGCCATGGACTTGGATCAACTTCTGATGAATTTCAGTGAACTCAAGCCGGAGAGTCCCTTGAGGTGCAAGAATTTGGAAGAGATGTCTGAAAAGCTTGACTCTCCACCGCCTGTATTTGAATCACCAAAATACTACACTCCATATGAGAATTTTGATGAGCTCTCTGACAAGCTTGACTATCCACCAATTGACTATACTGATTTCCCTTGGATTTCAGAGGACTGTGATTTCAAGTTGATGTCTCCAAATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

31.32

Weight (kDa)

8.7

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AciI	CCGC	2 cut(s)	275, 716
AclWI	GGATC	1 cut(s)	630
AcsI	RAATTY	5 cut(s)	196, 292, 637, 679, 757
AfeI	AGCGCT	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	150, 447
AgsI	TTSAA	4 cut(s)	50, 471, 728, 841
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	5 cut(s)	212, 514, 703, 769, 781
AluI	AGCT	5 cut(s)	212, 514, 703, 769, 781
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	1 cut(s)	855
AlwI	GGATC	1 cut(s)	630
Aor51HI	AGCGCT	1 cut(s)	129
AoxI	GGCC	2 cut(s)	109, 609
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	5 cut(s)	196, 292, 637, 679, 757
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	4 cut(s)	146, 242, 293, 723
BanII	GRGCYC	1 cut(s)	771
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	855
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	4 cut(s)	14, 329, 382, 600
BmuI	ACTGGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	635, 688
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	112, 315, 612, 815
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 447
Bse1I	ACTGG	1 cut(s)	406
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	4 cut(s)	112, 315, 612, 815
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	150, 447
BseMII	CTCAG	2 cut(s)	438, 489
BseNI	ACTGG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	196
BsgI	GTGCAG	2 cut(s)	144, 455
BshFI	GGCC	2 cut(s)	111, 611
BsiHKAI	GWGCWC	1 cut(s)	771
BsiSI	CCGG	1 cut(s)	656
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	2 cut(s)	150, 447
BsmAI	GTCTC	1 cut(s)	855
BsmFI	GGGAC	1 cut(s)	648
BsmI	GAATGC	2 cut(s)	187, 593
BsnI	GGCC	2 cut(s)	111, 611
Bsp1286I	GDGCHC	1 cut(s)	771
Bsp143I	GATC	2 cut(s)	31, 622
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	2 cut(s)	275, 716
BspANI	GGCC	2 cut(s)	111, 611
BspCNI	CTCAG	2 cut(s)	437, 488
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	110
BspMAI	CTGCAG	1 cut(s)	495
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	4 cut(s)	112, 315, 612, 815
BssMI	GATC	2 cut(s)	31, 622
BssT1I	CCWWGG	3 cut(s)	112, 612, 815
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	88, 833
Bst6I	CTCTTC	1 cut(s)	681
BstC8I	GCNNGC	2 cut(s)	159, 397
BstDEI	CTNAG	2 cut(s)	424, 475
BstDSI	CCRYGG	1 cut(s)	612
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	34, 625
BstMAI	GTCTC	1 cut(s)	855
BstMBI	GATC	2 cut(s)	31, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	111, 611
BtgI	CCRYGG	1 cut(s)	612
BtsIMutI	CAGTG	4 cut(s)	399, 483, 649, 859
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	159, 397
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	109
CviAII	CATG	3 cut(s)	389, 508, 613
DdeI	CTNAG	2 cut(s)	424, 475
DpnI	GATC	2 cut(s)	33, 624
DpnII	GATC	2 cut(s)	31, 622
DraI	TTTAAA	2 cut(s)	240, 418
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Ecl136II	GAGCTC	1 cut(s)	769
Eco130I	CCWWGG	3 cut(s)	112, 612, 815
Eco24I	GRGCYC	1 cut(s)	771
Eco47III	AGCGCT	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	769
EcoICRI	GAGCTC	1 cut(s)	769
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	3 cut(s)	112, 612, 815
EcoT22I	ATGCAT	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	771
ErhI	CCWWGG	3 cut(s)	112, 612, 815
FaeI	CATG	3 cut(s)	392, 511, 616
FaiI	YATR	9 cut(s)	287, 390, 444, 509, 524, 614, 751, 753, 804
FalI	AAGNNNNNCTT	4 cut(s)	96, 128, 522, 554
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	3 cut(s)	388, 507, 612
FauNDI	CATATG	1 cut(s)	751
Fnu4HI	GCNGC	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	111, 611
HapII	CCGG	1 cut(s)	656
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	392, 511, 616
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HindIII	AAGCTT	2 cut(s)	701, 779
HinfI	GANTC	5 cut(s)	25, 37, 661, 707, 728
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	4 cut(s)	146, 242, 293, 723
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	6 cut(s)	36, 427, 633, 697, 775, 826
Hpy188III	TCNNGA	3 cut(s)	29, 389, 584
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	5 cut(s)	114, 261, 383, 424, 557
HpyCH4III	ACNGT	2 cut(s)	88, 833
HpyCH4V	TGCA	7 cut(s)	161, 395, 436, 493, 557, 591, 675
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	424, 475
Hsp92II	CATG	3 cut(s)	392, 511, 616
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	31, 622
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	4 cut(s)	14, 329, 382, 600
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	33, 624
MboI	GATC	2 cut(s)	31, 622
MboII	GAAGA	4 cut(s)	327, 508, 542, 698
MfeI	CAATTG	1 cut(s)	795
MhlI	GDGCHC	1 cut(s)	771
MluCI	AATT	7 cut(s)	145, 196, 292, 637, 679, 757, 795
MlyI	GAGTC	2 cut(s)	670, 701
MnlI	CCTC	7 cut(s)	248, 352, 433, 546, 553, 663, 820
Mph1103I	ATGCAT	1 cut(s)	593
MseI	TTAA	4 cut(s)	42, 90, 239, 417
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	795
Mva1269I	GAATGC	2 cut(s)	187, 593
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	612
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	2 cut(s)	31, 622
NlaIII	CATG	3 cut(s)	392, 511, 616
NlaIV	GGNNCC	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	593
PagI	TCATGA	1 cut(s)	388
PctI	GAATGC	2 cut(s)	187, 593
PfeI	GAWTC	3 cut(s)	25, 37, 728
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	2 cut(s)	669, 701
PpsI	GAGTC	2 cut(s)	669, 701
Psp124BI	GAGCTC	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	771
SaqAI	TTAA	4 cut(s)	42, 90, 239, 417
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	31, 622
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	670, 701
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	771
SfaNI	GCATC	4 cut(s)	14, 329, 382, 600
SfcI	CTRYAG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	650, 667
SmoI	CTYRAG	2 cut(s)	650, 667
Sse9I	AATT	7 cut(s)	145, 196, 292, 637, 679, 757, 795
SsiI	CCGC	2 cut(s)	275, 716
SspMI	CTAG	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	771
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	3 cut(s)	112, 612, 815
TaaI	ACNGT	2 cut(s)	88, 833
TaqI	TCGA	2 cut(s)	176, 290
TasI	AATT	7 cut(s)	145, 196, 292, 637, 679, 757, 795
TfiI	GAWTC	3 cut(s)	25, 37, 728
Tru1I	TTAA	4 cut(s)	42, 90, 239, 417
Tru9I	TTAA	4 cut(s)	42, 90, 239, 417
TscAI	CASTG	3 cut(s)	406, 483, 649
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	377, 524, 650
TspRI	CASTG	3 cut(s)	406, 483, 649
XapI	RAATTY	5 cut(s)	196, 292, 637, 679, 757
XspI	CTAG	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.