Rorug03G0198600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001257
Physical Location & Seq
Forward (+)
17485398 .. 17489149
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0198600.1

Sequence Viewer

Length: 1434 bp
ATGGTGCGCAAGTATAAGCTCCGCCCACGGCCAACTGCTAGAGTAGACAGATTTAGTATCCTTCCAGATGAAGTTGCTCATCATATTCTTTCATTCCTCAAGTTCATAGATCTTGTTCGAGTGAGCACTGTCTCTAAAACATGCAGAAGATTTTATCTATCAATTCCCTCATTGAAAATCAATCGATATAATCTTTATGCTAGAAGAGATCAGGAGGAAGTAGAGTTATTGAATTTTTTGGACAGGTACTTTTTTAATCGTGGGGATAATAGGATACAGCATTTTCACATCCACTGGAGTTTCAATTGGAAGCCTTCTAATGAGCAGATTCAAGTAACTGAATGGATTGATAAAGCAGTAAGGTGTGATGTTGAAGTTCTCGACATTAGTTTCTGTGCACTTCCACCCTTGTTTGTGATGCCGTCTTCTGTCTTTGTTTCTCAATCTTTGAGGTCTCTATCAGTGCACTTGCATGGGGTGATTCTTCAAGCTCCTTCATCATCTCTTTTATGTAATCTGCATTCCTTGAAGTTGAGTGAAATTAAAATAGTAGATGAGTGCTTTTTCAAATGGATATCATGTTCCTGCAAATGCATTAAGGAGTTGCAGCTTGATCAGATTAGAGGGTTGCCAAAGATCACCATCGAAAGCTCATCGTTGAAATCATTTAAGGTTTGGAGTAAGGACCTCTTCCATCTCAACATCTTTGGTGATAAAATCGAAGATATACATATAACTTGGAGGAAATTTTATCCACCACCTAGCAGAAAATGGTTAAACATATCTGCTCCAAATCTTAAGTATTTGAAATGGGAAGGCAATTTGATGAATATCCAAAATCTTGGGATATTAATGAGTTTGGAAAAAGCTGTGGTTTTTCTAGAGTCTGCTGTAAATGAATTTGACAATGTATTTAAGGTTATCTGCAGCATCAGCAGAGCTAAAGTTGTTATTCTAAATGAATGGACCATTAAGGCTTTGTTGAGGGAATATATCATTCCCACACCATTAGATGATCTTTGTTGCTTCGGTGTGGAACTTAAGAACTTGAATGATGACCTTGTTCCTGCAGTGGTCTCTCTTCTTAGAGAAATGCCTAATCTGAATACTTTGCAAATACAGTGTAGTCCTCGCTCAAGTGTTGCTAATTCTCGATGTTCTGGGATTGATATGGGATTCTGGAAATTGCAAAACCTTGCTTTCATTTACCAGCTCAAGGAGGCAAAGCTATGGCTTTCCAATGGATCGAATGGAATTGAATTGGCAAAGTATATCCTGGAGCATGCTCAGAACTTGGAGAAAATGGTCATATTTCATTTATTCAAGGACTCTGATGTTGTAAGGGAGTTAAAAAGCAAGATGATATCCAATGCCACAGTTGTCTGTCATGTCAGCAAGGATGAAAGAGCAACCTCATTACGTTTTATTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

477

Amino Acids

55.4

Weight (kDa)

9.11

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 50 8.4e-08 F-box domain
F-box-like PF12937 19 - 50 3.1e-07 F-box-like
LRR_At5g56370 PF24758 113 - 269 4.8e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 8
AccI GTMKAC 1 cut(s) 45
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 1252
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 3 cut(s) 232, 746, 899
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 1216
AflII CTTAAG 2 cut(s) 797, 1040
AjnI CCWGG 1 cut(s) 1275
AloI GAACNNNNNNTCC 2 cut(s) 565, 597
AluBI AGCT 8 cut(s) 19, 491, 610, 651, 869, 941, 1213, 1228
AluI AGCT 8 cut(s) 19, 491, 610, 651, 869, 941, 1213, 1228
Alw21I GWGCWC 3 cut(s) 128, 400, 468
Alw26I GTCTC 3 cut(s) 136, 459, 1081
Alw44I GTGCAC 2 cut(s) 396, 464
AlwI GGATC 1 cut(s) 1252
AoxI GGCC 1 cut(s) 29
ApaLI GTGCAC 2 cut(s) 396, 464
ApeKI GCWGC 2 cut(s) 607, 927
ApoI RAATTY 3 cut(s) 232, 746, 899
AseI ATTAAT 1 cut(s) 851
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 685, 966
AsuHPI GGTGA 3 cut(s) 490, 631, 722
AvaII GGWCC 2 cut(s) 685, 966
BaeGI GKGCMC 2 cut(s) 400, 468
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 3 cut(s) 128, 400, 468
BbvI GCAGC 2 cut(s) 619, 939
BccI CCATC 2 cut(s) 650, 702
BceAI ACGGC 2 cut(s) 44, 406
BciT130I CCWGG 1 cut(s) 1277
BciVI GTATCC 2 cut(s) 68, 267
BclI TGATCA 1 cut(s) 613
BcoDI GTCTC 3 cut(s) 136, 459, 1081
BfaI CTAG 4 cut(s) 39, 201, 762, 881
BfmI CTRYAG 2 cut(s) 925, 1068
BfrI CTTAAG 2 cut(s) 797, 1040
BfuI GTATCC 2 cut(s) 68, 267
BglII AGATCT 1 cut(s) 109
BisI GCNGC 2 cut(s) 608, 928
BlsI GCNGC 2 cut(s) 609, 929
Bme1390I CCNGG 1 cut(s) 1277
Bme18I GGWCC 2 cut(s) 685, 966
BmgT120I GGNCC 2 cut(s) 685, 966
BmrFI CCNGG 1 cut(s) 1277
BmsI GCATC 2 cut(s) 408, 939
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 2 cut(s) 316, 1298
BpuEI CTTGAG 3 cut(s) 83, 1120, 1199
Bsa29I ATCGAT 1 cut(s) 184
BsaBI GATNNNNATC 2 cut(s) 641, 830
BsaI GGTCTC 2 cut(s) 459, 1081
BsaJI CCNNGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 1216
Bse1I ACTGG 1 cut(s) 299
Bse8I GATNNNNATC 2 cut(s) 641, 830
BseBI CCWGG 1 cut(s) 1277
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 288, 1405
BseJI GATNNNNATC 2 cut(s) 641, 830
BseLI CCNNNNNNNGG 1 cut(s) 1216
BseMII CTCAG 1 cut(s) 1301
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 2 cut(s) 400, 468
BseXI GCAGC 2 cut(s) 619, 939
BshFI GGCC 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 184
BsiHKAI GWGCWC 3 cut(s) 128, 400, 468
BslI CCNNNNNNNGG 1 cut(s) 1216
BsmAI GTCTC 3 cut(s) 136, 459, 1081
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 1 cut(s) 31
Bso31I GGTCTC 2 cut(s) 459, 1081
Bsp1286I GDGCHC 3 cut(s) 128, 400, 468
Bsp143I GATC 6 cut(s) 109, 208, 613, 636, 1015, 1244
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 1300
BspDI ATCGAT 1 cut(s) 184
BspMAI CTGCAG 2 cut(s) 929, 1072
BspPI GGATC 1 cut(s) 1252
BspTI CTTAAG 2 cut(s) 797, 1040
BspTNI GGTCTC 2 cut(s) 459, 1081
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 6 cut(s) 109, 208, 613, 636, 1015, 1244
Bst2UI CCWGG 1 cut(s) 1277
Bst4CI ACNGT 3 cut(s) 130, 1122, 1378
Bst6I CTCTTC 3 cut(s) 199, 695, 1086
BstAFI CTTAAG 2 cut(s) 797, 1040
BstC8I GCNNGC 1 cut(s) 1284
BstDEI CTNAG 2 cut(s) 1085, 1287
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 288, 1405
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 6 cut(s) 112, 211, 616, 639, 1018, 1247
BstMAI GTCTC 3 cut(s) 136, 459, 1081
BstMBI GATC 6 cut(s) 109, 208, 613, 636, 1015, 1244
BstMWI GCNNNNNNNGC 1 cut(s) 933
BstNI CCWGG 1 cut(s) 1277
BstNSI RCATGY 2 cut(s) 144, 1286
BstSCI CCNGG 1 cut(s) 1275
BstSFI CTRYAG 2 cut(s) 925, 1068
BstSLI GKGCMC 2 cut(s) 400, 468
BstV1I GCAGC 2 cut(s) 619, 939
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 184
BsuI GTATCC 2 cut(s) 68, 267
BsuRI GGCC 1 cut(s) 31
BsuTUI ATCGAT 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 288, 1405
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 5 cut(s) 126, 292, 468, 1077, 1127
Cac8I GCNNGC 1 cut(s) 1284
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 685, 966
ClaI ATCGAT 1 cut(s) 184
Csp6I GTAC 1 cut(s) 247
CviAII CATG 5 cut(s) 141, 473, 579, 1283, 1388
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 1085, 1287
DpnI GATC 6 cut(s) 111, 210, 615, 638, 1017, 1246
DpnII GATC 6 cut(s) 109, 208, 613, 636, 1015, 1244
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 3 cut(s) 199, 695, 1086
EarI CTCTTC 3 cut(s) 199, 695, 1086
EciI GGCGGA 1 cut(s) 11
Eco31I GGTCTC 2 cut(s) 459, 1081
Eco32I GATATC 2 cut(s) 576, 1365
Eco47I GGWCC 2 cut(s) 685, 966
EcoO109I RGGNCCY 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 1275
EcoRV GATATC 2 cut(s) 576, 1365
EcoT22I ATGCAT 1 cut(s) 596
FaeI CATG 5 cut(s) 144, 476, 582, 1286, 1391
FalI AAGNNNNNCTT 2 cut(s) 674, 706
FatI CATG 5 cut(s) 140, 472, 578, 1282, 1387
FbaI TGATCA 1 cut(s) 613
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 608, 928
FokI GGATG 2 cut(s) 275, 1412
Fsp4HI GCNGC 2 cut(s) 608, 928
FspBI CTAG 4 cut(s) 39, 201, 762, 881
FspI TGCGCA 1 cut(s) 8
GlaI GCGC 1 cut(s) 8
GluI GCNGC 2 cut(s) 608, 928
GsuI CTGGAG 2 cut(s) 316, 1298
HaeIII GGCC 1 cut(s) 31
HhaI GCGC 1 cut(s) 9
Hin1II CATG 5 cut(s) 144, 476, 582, 1286, 1391
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 5 cut(s) 328, 481, 884, 1176, 1328
HphI GGTGA 3 cut(s) 490, 631, 722
Hpy166II GTNNAC 3 cut(s) 46, 398, 466
Hpy188I TCNGA 4 cut(s) 618, 1104, 1290, 1333
Hpy188III TCNNGA 6 cut(s) 65, 212, 380, 881, 1152, 1180
Hpy8I GTNNAC 3 cut(s) 46, 398, 466
HpyAV CCTTC 4 cut(s) 71, 324, 504, 809
HpyCH4III ACNGT 3 cut(s) 130, 1122, 1378
HpyCH4IV ACGT 1 cut(s) 1420
HpyF10VI GCNNNNNNNGC 1 cut(s) 933
HpyF3I CTNAG 2 cut(s) 1085, 1287
HpySE526I ACGT 1 cut(s) 1420
Hsp92II CATG 5 cut(s) 144, 476, 582, 1286, 1391
HspAI GCGC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 6 cut(s) 109, 208, 613, 636, 1015, 1244
LmnI GCTCC 4 cut(s) 24, 496, 793, 1279
Lsp1109I GCAGC 2 cut(s) 619, 939
LweI GCATC 2 cut(s) 408, 939
MaeI CTAG 4 cut(s) 39, 201, 762, 881
MaeII ACGT 1 cut(s) 1420
MaeIII GTNAC 1 cut(s) 334
MalI GATC 6 cut(s) 111, 210, 615, 638, 1017, 1246
MboI GATC 6 cut(s) 109, 208, 613, 636, 1015, 1244
MboII GAAGA 7 cut(s) 159, 216, 417, 476, 682, 734, 1073
MfeI CAATTG 1 cut(s) 304
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 3 cut(s) 128, 400, 468
MlyI GAGTC 2 cut(s) 893, 1322
Mph1103I ATGCAT 1 cut(s) 596
MslI CAYNNNNRTG 1 cut(s) 471
MspCI CTTAAG 2 cut(s) 797, 1040
MspR9I CCNGG 1 cut(s) 1277
MunI CAATTG 1 cut(s) 304
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 1 cut(s) 1277
MwoI GCNNNNNNNGC 1 cut(s) 933
NdeII GATC 6 cut(s) 109, 208, 613, 636, 1015, 1244
NlaIII CATG 5 cut(s) 144, 476, 582, 1286, 1391
NsbI TGCGCA 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 596
NspI RCATGY 2 cut(s) 144, 1286
PaeI GCATGC 1 cut(s) 1286
PcsI WCGNNNNNNNCGW 1 cut(s) 1426
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 3 cut(s) 328, 481, 1176
PfoI TCCNGGA 1 cut(s) 1275
PkrI GCNGC 2 cut(s) 609, 929
PleI GAGTC 2 cut(s) 892, 1322
PpsI GAGTC 2 cut(s) 892, 1322
PpuMI RGGWCCY 1 cut(s) 685
PshBI ATTAAT 1 cut(s) 851
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 1 cut(s) 1275
PspGI CCWGG 1 cut(s) 1275
PspPI GGNCC 2 cut(s) 685, 966
PspPPI RGGWCCY 1 cut(s) 685
PstI CTGCAG 2 cut(s) 929, 1072
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 471
SatI GCNGC 2 cut(s) 608, 928
Sau3AI GATC 6 cut(s) 109, 208, 613, 636, 1015, 1244
Sau96I GGNCC 2 cut(s) 685, 966
SchI GAGTC 2 cut(s) 893, 1322
ScrFI CCNGG 1 cut(s) 1277
SduI GDGCHC 3 cut(s) 128, 400, 468
SfaNI GCATC 2 cut(s) 408, 939
SfcI CTRYAG 2 cut(s) 925, 1068
SinI GGWCC 2 cut(s) 685, 966
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 5 cut(s) 98, 797, 1040, 1135, 1214
SmoI CTYRAG 5 cut(s) 98, 797, 1040, 1135, 1214
SphI GCATGC 1 cut(s) 1286
SsiI CCGC 1 cut(s) 22
SspMI CTAG 4 cut(s) 39, 201, 762, 881
StyD4I CCNGG 1 cut(s) 1275
TaaI ACNGT 3 cut(s) 130, 1122, 1378
TaiI ACGT 1 cut(s) 1423
TaqI TCGA 7 cut(s) 118, 184, 381, 645, 720, 1153, 1247
TfiI GAWTC 3 cut(s) 328, 481, 1176
TscAI CASTG 5 cut(s) 133, 299, 468, 1077, 1127
TseI GCWGC 2 cut(s) 607, 927
TspRI CASTG 5 cut(s) 133, 299, 468, 1077, 1127
Vha464I CTTAAG 2 cut(s) 797, 1040
VneI GTGCAC 2 cut(s) 396, 464
VpaK11BI GGWCC 2 cut(s) 685, 966
VspI ATTAAT 1 cut(s) 851
XapI RAATTY 3 cut(s) 232, 746, 899
XbaI TCTAGA 1 cut(s) 880
XceI RCATGY 2 cut(s) 144, 1286
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 4 cut(s) 39, 201, 762, 881
Zsp2I ATGCAT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.