Rorug03G0198700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001257
Physical Location & Seq
Forward (+)
17492176 .. 17493333
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0198700.1

Sequence Viewer

Length: 642 bp
ATGAATATTTCTGCTCCAAATCTCAAACACTTCAGGTGGACTGGAAATTTGATGAGTCATCCAAATGTTGGAAATTTAACGCGTTTAGAAAAAGTTGAGCTTTTTCTATCCCCTCGAGTAGATGACTTTGACAGCCTATTGGAGTTCCTTTCTGGTATTCGCAGGACTAAAGTTCTTATTTTAGATGGGATGACTATGAAGGCTATGTTTAAGGGAGGTTCCATTCCATTACCATTAGATGAGATTAGTAATTTAGGCATGCATATTGAAAGCTTGGGTGATGGTCTAGTCCCGGCAATGGTCTCTTTTCTCAGAGGAATGACTAATTTGAATACTCTCTGGGTAAAATCTGCCAATAGGCCCAAAAAACCATCCTCTCTACAGGTTGAGGCATCTGGGTTTAAGATGGGTTTTTGGAAATCCCAAAGGCTTGCTTTCGTTTCTCAACTTAAGGAGGTAAGAATAGAGCTTTCAAATGGGAGTAATGAGATCGAGTTAGCAAGGTATTTGCTGAAGCATGCTCATAATTTGAAGGAAATGGTCCTACTTTATTGGCCCCAGCAGTCCTATCTTTTAGAGAAGATTATCGGAAAGAAGATTGTTTCTACTGCCAAGCTTGTCTTGCAGAAAAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.15

Weight (kDa)

9.99

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 68
AccII CGCG 1 cut(s) 82
AcsI RAATTY 2 cut(s) 46, 73
AcuI CTGAAG 2 cut(s) 16, 533
AfiI CCNNNNNNNGG 2 cut(s) 68, 298
AflII CTTAAG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 80
AgsI TTSAA 4 cut(s) 269, 331, 474, 532
AluBI AGCT 4 cut(s) 100, 273, 469, 616
AluI AGCT 4 cut(s) 100, 273, 469, 616
Alw26I GTCTC 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 2 cut(s) 359, 554
ApoI RAATTY 2 cut(s) 46, 73
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspS9I GGNCC 3 cut(s) 360, 541, 555
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 290
AvaI CYCGRG 1 cut(s) 114
AvaII GGWCC 1 cut(s) 541
BccI CCATC 4 cut(s) 179, 275, 379, 400
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 380
BfrI CTTAAG 1 cut(s) 449
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 3 cut(s) 360, 541, 555
BmiI GGNNCC 2 cut(s) 220, 557
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 307
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 298
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 303
BseGI GGATG 3 cut(s) 58, 195, 371
BseLI CCNNNNNNNGG 2 cut(s) 68, 298
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 361, 556
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 2 cut(s) 68, 298
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 2 cut(s) 361, 556
Bso31I GGTCTC 1 cut(s) 307
BsoBI CYCGRG 1 cut(s) 114
Bsp143I GATC 1 cut(s) 489
BspANI GGCC 2 cut(s) 361, 556
BspCNI CTCAG 1 cut(s) 324
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 220, 557
BspTI CTTAAG 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 1 cut(s) 46
BssMI GATC 1 cut(s) 489
BstAFI CTTAAG 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 260, 432, 519
BstDEI CTNAG 1 cut(s) 311
BstF5I GGATG 3 cut(s) 58, 195, 371
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 1 cut(s) 492
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 489
BstMWI GCNNNNNNNGC 1 cut(s) 622
BstNSI RCATGY 2 cut(s) 262, 521
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 380
BstUI CGCG 1 cut(s) 82
BsuRI GGCC 2 cut(s) 361, 556
BtsCI GGATG 3 cut(s) 58, 195, 371
Cac8I GCNNGC 3 cut(s) 260, 432, 519
Cfr13I GGNCC 3 cut(s) 360, 541, 555
CviAII CATG 2 cut(s) 259, 518
CviJI RGCY 9 cut(s) 100, 135, 203, 273, 361, 430, 469, 556, 616
CviKI_1 RGCY 9 cut(s) 100, 135, 203, 273, 361, 430, 469, 556, 616
DdeI CTNAG 1 cut(s) 311
DpnI GATC 1 cut(s) 491
DpnII GATC 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 16, 533
Eco88I CYCGRG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 264
FaeI CATG 2 cut(s) 262, 521
FaiI YATR 6 cut(s) 197, 206, 260, 264, 519, 525
FalI AAGNNNNNCTT 6 cut(s) 84, 116, 418, 450, 605, 637
FaqI GGGAC 1 cut(s) 275
FatI CATG 2 cut(s) 258, 517
FokI GGATG 3 cut(s) 45, 202, 358
FspBI CTAG 1 cut(s) 287
GsaI CCCAGC 1 cut(s) 562
HaeIII GGCC 2 cut(s) 361, 556
HapII CCGG 1 cut(s) 293
Hin1II CATG 2 cut(s) 262, 521
HindIII AAGCTT 2 cut(s) 271, 614
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 314, 590
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 193, 526
HpyCH4V TGCA 2 cut(s) 262, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 622
HpyF3I CTNAG 1 cut(s) 311
Hsp92II CATG 2 cut(s) 262, 521
Kzo9I GATC 1 cut(s) 489
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 9 cut(s) 19, 27, 138, 148, 306, 325, 368, 381, 572
LweI GCATC 1 cut(s) 401
MaeI CTAG 1 cut(s) 287
MalI GATC 1 cut(s) 491
MboI GATC 1 cut(s) 489
MboII GAAGA 2 cut(s) 592, 607
MluCI AATT 5 cut(s) 46, 73, 250, 325, 526
MluI ACGCGT 1 cut(s) 80
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 6 cut(s) 123, 209, 308, 382, 385, 448
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 4 cut(s) 77, 210, 402, 450
MslI CAYNNNNRTG 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 449
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 622
NciI CCSGG 1 cut(s) 293
NdeII GATC 1 cut(s) 489
NlaIII CATG 2 cut(s) 262, 521
NlaIV GGNNCC 2 cut(s) 220, 557
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 2 cut(s) 262, 521
PaeI GCATGC 2 cut(s) 262, 521
PaeR7I CTCGAG 1 cut(s) 114
PflMI CCANNNNNTGG 1 cut(s) 68
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 558
PspN4I GGNNCC 2 cut(s) 220, 557
PspPI GGNCC 3 cut(s) 360, 541, 555
PspXI VCTCGAGB 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 4 cut(s) 77, 210, 402, 450
Sau3AI GATC 1 cut(s) 489
Sau96I GGNCC 3 cut(s) 360, 541, 555
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 293
SetI ASST 9 cut(s) 38, 102, 220, 275, 387, 459, 471, 506, 618
SfaNI GCATC 1 cut(s) 401
SfcI CTRYAG 1 cut(s) 380
Sfr274I CTCGAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 541
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 114, 449
SmoI CTYRAG 2 cut(s) 114, 449
SphI GCATGC 2 cut(s) 262, 521
Sse9I AATT 5 cut(s) 46, 73, 250, 325, 526
SspI AATATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 291
TaqI TCGA 2 cut(s) 115, 492
TasI AATT 5 cut(s) 46, 73, 250, 325, 526
Tru1I TTAA 4 cut(s) 77, 210, 402, 450
Tru9I TTAA 4 cut(s) 77, 210, 402, 450
TspDTI ATGAA 2 cut(s) 17, 212
Van91I CCANNNNNTGG 1 cut(s) 68
Vha464I CTTAAG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 541
XapI RAATTY 2 cut(s) 46, 73
XceI RCATGY 2 cut(s) 262, 521
XhoI CTCGAG 1 cut(s) 114
XspI CTAG 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.