Rmu_ssc0000175.1_g000036

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000175.1
OG0001257
Physical Location & Seq
Reverse (-)
174260 .. 175594
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000175.1_g000036.1.cds

Sequence Viewer

Length: 771 bp
atgatggttgaggatctaggtgtggaagcgaaggaagcggcggttcgggaggtggcgaagctgttgcctctgccggagctccttcagtctatttcttccatcaaggccgattacattgctcgccaacagaacctcaatgttcactctaatggagattctgctgttggaaagggtggtgcaaaacaacagaagaaagcagggtttggtggaaggaaacctctaggagatgtatcgaatacagggaagcctgattttaccaaggtgtcgaaaaagcctgctcttaccaatgtttctgaaatcattgctgatgcaagcaataagaaaggcctttgtaaagcctcggataaagtgcagactcgtggcagccgcaaggcactatctgatgtgtctaacacagtcaaaccacctgtgcacaagaagtcaagtgttgtggcacaaccaccttgtggttttgaggaagaaggattcttgcatgaccatcaacagtgcatcaaatctatgagaaaggctaaccaaaaggatcaaatggatttttttatgacaatacaaggatcagattcatccaagaagcttctatctccctgtgcagtttctcagtttcgtaaagttgagccggagagttccatgaggtacttggatttgaaagagatgcctgagctgtctatcaagcttgactcttcacctcattgcaagtctccattgtcaccaactcataccaagtccacttggatttgggatgattgtgattttcaggtgatggagacaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.06

Weight (kDa)

9.01

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 446
AciI CCGC 3 cut(s) 38, 41, 367
AclWI GGATC 3 cut(s) 21, 528, 559
AcuI CTGAAG 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 446
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 1 cut(s) 643
AluBI AGCT 5 cut(s) 61, 79, 571, 658, 670
AluI AGCT 5 cut(s) 61, 79, 571, 658, 670
Alw21I GWGCWC 2 cut(s) 81, 414
Alw26I GTCTC 2 cut(s) 699, 755
Alw44I GTGCAC 1 cut(s) 410
AlwI GGATC 3 cut(s) 21, 528, 559
AoxI GGCC 2 cut(s) 105, 325
ApaLI GTGCAC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 363
AsuHPI GGTGA 3 cut(s) 672, 696, 766
BaeGI GKGCMC 1 cut(s) 414
BanII GRGCYC 1 cut(s) 81
BauI CACGAG 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 81, 414
BbvI GCAGC 1 cut(s) 375
BccI CCATC 3 cut(s) 107, 486, 751
BcgI CGANNNNNNTGC 4 cut(s) 46, 80, 98, 132
BcoDI GTCTC 2 cut(s) 699, 755
BfaI CTAG 2 cut(s) 17, 221
BisI GCNGC 3 cut(s) 39, 364, 367
BlsI GCNGC 3 cut(s) 40, 365, 368
BmsI GCATC 3 cut(s) 298, 498, 639
Bpu10I CCTNAGC 1 cut(s) 654
BsaJI CCNNGG 2 cut(s) 258, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse3DI GCAATG 3 cut(s) 114, 300, 685
BseDI CCNNGG 2 cut(s) 258, 339
BseGI GGATG 2 cut(s) 560, 742
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 3 cut(s) 114, 300, 685
BseMII CTCAG 2 cut(s) 608, 645
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 1 cut(s) 375
BsgI GTGCAG 2 cut(s) 371, 606
BshFI GGCC 2 cut(s) 107, 327
BsiHKAI GWGCWC 2 cut(s) 81, 414
BsiSI CCGG 2 cut(s) 74, 614
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 2 cut(s) 699, 755
BsnI GGCC 2 cut(s) 107, 327
Bsp1286I GDGCHC 2 cut(s) 81, 414
Bsp143I GATC 3 cut(s) 13, 520, 551
BspACI CCGC 3 cut(s) 38, 41, 367
BspANI GGCC 2 cut(s) 107, 327
BspCNI CTCAG 2 cut(s) 607, 646
BspPI GGATC 3 cut(s) 21, 528, 559
BsrDI GCAATG 3 cut(s) 114, 300, 685
BssECI CCNNGG 2 cut(s) 258, 339
BssMI GATC 3 cut(s) 13, 520, 551
BssSI CACGAG 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 397, 486
Bst6I CTCTTC 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 121, 276, 313
BstDEI CTNAG 3 cut(s) 594, 654, 768
BstF5I GGATG 2 cut(s) 560, 742
BstKTI GATC 3 cut(s) 16, 523, 554
BstMAI GTCTC 2 cut(s) 699, 755
BstMBI GATC 3 cut(s) 13, 520, 551
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 414
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 2 cut(s) 107, 327
BtsCI GGATG 2 cut(s) 560, 742
BtsIMutI CAGTG 1 cut(s) 491
Cac8I GCNNGC 3 cut(s) 121, 276, 313
Csp6I GTAC 1 cut(s) 631
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 2 cut(s) 473, 625
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 3 cut(s) 594, 654, 768
DpnI GATC 3 cut(s) 15, 522, 553
DpnII GATC 3 cut(s) 13, 520, 551
DraIII CACNNNGTG 1 cut(s) 446
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 2 cut(s) 476, 628
FaiI YATR 5 cut(s) 474, 500, 539, 626, 714
FatI CATG 2 cut(s) 472, 624
Fnu4HI GCNGC 3 cut(s) 39, 364, 367
FokI GGATG 2 cut(s) 547, 749
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 3 cut(s) 39, 364, 367
FspBI CTAG 2 cut(s) 17, 221
GluI GCNGC 3 cut(s) 39, 364, 367
HaeIII GGCC 2 cut(s) 107, 327
HapII CCGG 2 cut(s) 74, 614
Hin1II CATG 2 cut(s) 476, 628
HindIII AAGCTT 2 cut(s) 569, 668
HinfI GANTC 5 cut(s) 155, 355, 465, 557, 674
HpaII CCGG 2 cut(s) 74, 614
HphI GGTGA 3 cut(s) 672, 696, 766
Hpy166II GTNNAC 3 cut(s) 142, 412, 723
Hpy188I TCNGA 4 cut(s) 295, 343, 382, 556
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 3 cut(s) 142, 412, 723
HpyAV CCTTC 4 cut(s) 25, 92, 204, 455
HpyCH4III ACNGT 2 cut(s) 397, 486
HpyCH4V TGCA 8 cut(s) 179, 311, 352, 412, 472, 489, 587, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 3 cut(s) 594, 654, 768
Hsp92II CATG 2 cut(s) 476, 628
Kzo9I GATC 3 cut(s) 13, 520, 551
LmnI GCTCC 2 cut(s) 76, 84
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 3 cut(s) 298, 498, 639
MaeI CTAG 2 cut(s) 17, 221
MaeIII GTNAC 1 cut(s) 702
MalI GATC 3 cut(s) 15, 522, 553
MboI GATC 3 cut(s) 13, 520, 551
MboII GAAGA 4 cut(s) 87, 202, 470, 669
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 81, 414
MlyI GAGTC 2 cut(s) 349, 668
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 9 cut(s) 4, 43, 78, 143, 228, 349, 448, 621, 693
MslI CAYNNNNRTG 1 cut(s) 147
MspI CCGG 2 cut(s) 74, 614
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 3 cut(s) 13, 520, 551
NlaIII CATG 2 cut(s) 476, 628
NmuCI GTSAC 1 cut(s) 702
PceI AGGCCT 1 cut(s) 327
PfeI GAWTC 3 cut(s) 155, 465, 557
PflMI CCANNNNNTGG 1 cut(s) 446
PkrI GCNGC 3 cut(s) 40, 365, 368
PleI GAGTC 2 cut(s) 349, 668
PpsI GAGTC 2 cut(s) 349, 668
Psp124BI GAGCTC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
RseI CAYNNNNRTG 1 cut(s) 147
SacI GAGCTC 1 cut(s) 81
SatI GCNGC 3 cut(s) 39, 364, 367
Sau3AI GATC 3 cut(s) 13, 520, 551
SchI GAGTC 2 cut(s) 349, 668
SduI GDGCHC 2 cut(s) 81, 414
SfaNI GCATC 3 cut(s) 298, 498, 639
SmiMI CAYNNNNRTG 1 cut(s) 147
SseBI AGGCCT 1 cut(s) 327
SsiI CCGC 3 cut(s) 38, 41, 367
SspMI CTAG 2 cut(s) 17, 221
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 327
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 397, 486
TaqI TCGA 2 cut(s) 233, 266
TauI GCSGC 2 cut(s) 41, 369
TfiI GAWTC 3 cut(s) 155, 465, 557
TscAI CASTG 1 cut(s) 491
TseFI GTSAC 1 cut(s) 702
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 702
TspDTI ATGAA 1 cut(s) 549
TspRI CASTG 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 446
VneI GTGCAC 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XspI CTAG 2 cut(s) 17, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.