Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

8722752 .. 8724852

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGATCCACAGATGGTTCTCCCTCCCTCTGCCTAATTAAATCAGGTTATGTACTTTATATGAAGATGTGTAGAATGACAGTCAAAGAAGTGTATCATCTCGAACACTGTCTGCTAGAGTGGACAGCTTTAATGAAGCCAATGAAAACAGGAAGAGGGGAATGGTTCTTCTTTTTGAACCTCCTTTGGATTACATTGATGAAATCAAATATTCTGTGGACGTGCCCCAGATCCATATCAGTACAAGTATTGTCAATCTTGAAACTAATTCGTAGAGCTGAATGCGTATCAACATTTCAATTTGAGTATATGTATCGACATTTCAATTTGAGACCAGTAGGTTTTGGGAATTTGTGGCCAGTTAGCAGAGAATTAAGTTCAATTGGCTACAGTTACCAATGGCATCTAAAGTCTAACCGTATTATCTACAAGAGGAGTTTCTGTCAAATCAACAAAGGAAAGGGGACTTGGTCGGAGATACCTCTTGCAGATTTGTCAAATAGGGGGAAGCCTGATTTTACCAAGCCATCGAGAAAGCCTGCTGTCACCAGTTTTCTGGAAATCATTGCTGATGCAAGCAAAGGCTCATCTAAAACCTCCGGTTTCCTGCATGACCATGAGCAGTGCATCAAAGCAATGAGAGAGGCTGCCCAGATGGATGAAATGGATATATTCAGGATGATAAATGGACCAACTCCATCCAAGAAGCTTTCATCTCCACCAAAAGCTTCTCAGTTAACCGAAGGTGAGCAGGAAATGATAATGACATATTTGAAAGAGATACCTGAGGATCAGTACACCTTGCTTCCTATCACGCAGGACTCAGTCTCCTCACCTCCTTTGTCTCCACCTCAATTTGTGGATTGGGGAGGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

293

Amino Acids

33.56

Weight (kDa)

9.15

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	225, 798
AcoI	YGGCCR	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	3 cut(s)	54, 243, 797
AgsI	TTSAA	6 cut(s)	178, 262, 299, 325, 381, 775
AjiI	CACGTC	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AluBI	AGCT	4 cut(s)	128, 278, 709, 728
AluI	AGCT	4 cut(s)	128, 278, 709, 728
Alw26I	GTCTC	3 cut(s)	325, 832, 849
AlwI	GGATC	2 cut(s)	225, 798
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	3 cut(s)	538, 758, 825
AvaII	GGWCC	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	786
BaeGI	GKGCMC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	4 cut(s)	8, 535, 649, 706
BcoDI	GTCTC	3 cut(s)	325, 832, 849
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	388
BisI	GCNGC	1 cut(s)	648
BlsI	GCNGC	1 cut(s)	649
Bme18I	GGWCC	1 cut(s)	689
BmgBI	CACGTC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	689
BmsI	GCATC	3 cut(s)	412, 562, 636
BsaBI	GATNNNNATC	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	599
BsaXI	ACNNNNNCTCC	4 cut(s)	427, 457, 812, 842
Bse1I	ACTGG	3 cut(s)	335, 359, 549
Bse21I	CCTNAGG	1 cut(s)	786
Bse3DI	GCAATG	2 cut(s)	564, 642
Bse8I	GATNNNNATC	1 cut(s)	235
BseGI	GGATG	3 cut(s)	664, 684, 698
BseJI	GATNNNNATC	1 cut(s)	235
BseMI	GCAATG	2 cut(s)	564, 642
BseMII	CTCAG	3 cut(s)	746, 777, 837
BseNI	ACTGG	3 cut(s)	335, 359, 549
BseRI	GAGGAG	2 cut(s)	448, 820
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	634
BshFI	GGCC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	478
BsmAI	GTCTC	3 cut(s)	325, 832, 849
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	358
Bso31I	GGTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	3 cut(s)	5, 230, 790
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	3 cut(s)	745, 778, 836
BspPI	GGATC	2 cut(s)	225, 798
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	564, 642
BsrI	ACTGG	3 cut(s)	335, 359, 549
BssMI	GATC	3 cut(s)	5, 230, 790
Bst4CI	ACNGT	5 cut(s)	82, 110, 392, 419, 876
Bst6I	CTCTTC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	540, 577
BstDEI	CTNAG	3 cut(s)	732, 786, 823
BstF5I	GGATG	3 cut(s)	664, 684, 698
BstKTI	GATC	3 cut(s)	8, 233, 793
BstMAI	GTCTC	3 cut(s)	325, 832, 849
BstMBI	GATC	3 cut(s)	5, 230, 790
BstSFI	CTRYAG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	634
BstX2I	RGATCY	2 cut(s)	5, 230
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	2 cut(s)	5, 230
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	1 cut(s)	358
BtrI	CACGTC	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	664, 684, 698
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	2 cut(s)	106, 629
Cac8I	GCNNGC	2 cut(s)	540, 577
Cfr13I	GGNCC	1 cut(s)	689
Csp6I	GTAC	3 cut(s)	53, 242, 796
CviAII	CATG	2 cut(s)	611, 617
CviQI	GTAC	3 cut(s)	53, 242, 796
DdeI	CTNAG	3 cut(s)	732, 786, 823
DpnI	GATC	3 cut(s)	7, 232, 792
DpnII	GATC	3 cut(s)	5, 230, 790
EaeI	YGGCCR	1 cut(s)	356
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	689
Eco81I	CCTNAGG	1 cut(s)	786
FaeI	CATG	2 cut(s)	614, 620
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	610, 616
Fnu4HI	GCNGC	1 cut(s)	648
FokI	GGATG	3 cut(s)	671, 685, 691
Fsp4HI	GCNGC	1 cut(s)	648
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	600
Hin1II	CATG	2 cut(s)	614, 620
HincII	GTYRAC	1 cut(s)	738
HindII	GTYRAC	1 cut(s)	738
HindIII	AAGCTT	2 cut(s)	707, 726
HinfI	GANTC	1 cut(s)	821
HpaI	GTTAAC	1 cut(s)	738
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	3 cut(s)	538, 758, 825
Hpy166II	GTNNAC	4 cut(s)	123, 219, 738, 798
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	5 cut(s)	101, 259, 531, 557, 676
Hpy8I	GTNNAC	4 cut(s)	123, 219, 738, 798
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	5 cut(s)	82, 110, 392, 419, 876
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	4 cut(s)	488, 575, 610, 627
HpyF3I	CTNAG	3 cut(s)	732, 786, 823
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	614, 620
KspAI	GTTAAC	1 cut(s)	738
Kzo9I	GATC	3 cut(s)	5, 230, 790
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	3 cut(s)	412, 562, 636
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	392, 544
MalI	GATC	3 cut(s)	7, 232, 792
MboI	GATC	3 cut(s)	5, 230, 790
MboII	GAAGA	3 cut(s)	76, 160, 165
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	2 cut(s)	5, 230
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	358
MluCI	AATT	8 cut(s)	36, 267, 299, 325, 349, 371, 381, 854
MluNI	TGGCCA	1 cut(s)	358
MlyI	GAGTC	1 cut(s)	815
MmeI	TCCRAC	1 cut(s)	453
Mox20I	TGGCCA	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	358
MseI	TTAA	4 cut(s)	39, 131, 374, 737
MslI	CAYNNNNRTG	1 cut(s)	615
Msp20I	TGGCCA	1 cut(s)	358
MspI	CCGG	1 cut(s)	600
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	287
NdeII	GATC	3 cut(s)	5, 230, 790
NlaIII	CATG	2 cut(s)	614, 620
NmuCI	GTSAC	1 cut(s)	544
PctI	GAATGC	1 cut(s)	287
PflFI	GACNNNGTC	2 cut(s)	469, 824
PkrI	GCNGC	1 cut(s)	649
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
PspPI	GGNCC	1 cut(s)	689
PsuI	RGATCY	2 cut(s)	5, 230
PsyI	GACNNNGTC	2 cut(s)	469, 824
RsaI	GTAC	3 cut(s)	54, 243, 797
RsaNI	GTAC	3 cut(s)	53, 242, 796
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	4 cut(s)	39, 131, 374, 737
SatI	GCNGC	1 cut(s)	648
Sau3AI	GATC	3 cut(s)	5, 230, 790
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	3 cut(s)	412, 562, 636
SfcI	CTRYAG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	615
Sse9I	AATT	8 cut(s)	36, 267, 299, 325, 349, 371, 381, 854
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	116
TaaI	ACNGT	5 cut(s)	82, 110, 392, 419, 876
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	102, 316, 530
TasI	AATT	8 cut(s)	36, 267, 299, 325, 349, 371, 381, 854
TatI	WGTACW	3 cut(s)	52, 241, 795
Tru1I	TTAA	4 cut(s)	39, 131, 374, 737
Tru9I	TTAA	4 cut(s)	39, 131, 374, 737
TscAI	CASTG	2 cut(s)	113, 629
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	6 cut(s)	77, 149, 158, 215, 675, 702
TspRI	CASTG	2 cut(s)	113, 629
Tth111I	GACNNNGTC	2 cut(s)	469, 824
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	1 cut(s)	349
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.