Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

27776127 .. 27776962

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCATCAACAATTGGTCGTTTGTTTCAAGATCAGAATCTCAGTGTTCACTCTAATGGAAATTCTGCTGTAGGAATGGGTGGTGCAAAAACACAGAAGAAAGCTGGGTTTGGTGGAAGGAAACCTCTAGGAGATGTATCGAACACTGGGAAGCCTGATTTTTCCAACGTGTCGAAAAAGCCTGCTCTTACCAATGTTTCTAAAATCATTACTGATGCAAGCAACAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAATCGGAAGGCACTATCTGATGTGTCTAACATAGTCAAGCCACATGTGCATAAGAAGTCATGTGTTACGGCACAACCACCTTGTGGTTTTGAGGAGGAAGGTTTCCTGCATGACCATCAACAGTGCATCAAATCTATGAGAAAGGCTAATCACATGGATCAAATGGATTTTTTGATACAAGGATCAGATTCATCCAAGAAGCTTCTGTCTCCATGTGCAAAGCTTGACTCTTCACCTCATTGCAAGTCTCCACTATCACCAAATCATACCAAGTCCACTTTGGTTTGGGATGATTGTGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

191

Amino Acids

20.59

Weight (kDa)

9.49

Isoelectric Point (pI)

25.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AclWI	GGATC	2 cut(s)	435, 460
AcsI	RAATTY	1 cut(s)	61
AdeI	CACNNNGTG	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflIII	ACRYGT	2 cut(s)	168, 313
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	3 cut(s)	104, 472, 493
AluI	AGCT	3 cut(s)	104, 472, 493
Alw26I	GTCTC	2 cut(s)	483, 522
AlwI	GGATC	2 cut(s)	435, 460
AoxI	GGCC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	495, 519
BauI	CACGAG	1 cut(s)	264
BccI	CCATC	1 cut(s)	393
BceAI	ACGGC	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	483, 522
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	14, 205, 405
BmuI	ACTGGG	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	508
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	461, 565
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	377
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	483, 522
BsnI	GGCC	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	31, 427, 452
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	54
BspPI	GGATC	2 cut(s)	435, 460
BsrDI	GCAATG	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	3 cut(s)	31, 427, 452
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	183, 220
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	461, 565
BstKTI	GATC	3 cut(s)	34, 430, 455
BstMAI	GTCTC	2 cut(s)	483, 522
BstMBI	GATC	3 cut(s)	31, 427, 452
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	461, 565
BtsIMutI	CAGTG	3 cut(s)	49, 144, 398
Cac8I	GCNNGC	2 cut(s)	183, 220
CviAII	CATG	5 cut(s)	314, 330, 380, 424, 483
CviJI	RGCY	9 cut(s)	104, 154, 181, 234, 245, 310, 416, 472, 493
CviKI_1	RGCY	9 cut(s)	104, 154, 181, 234, 245, 310, 416, 472, 493
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	3 cut(s)	33, 429, 454
DpnII	GATC	3 cut(s)	31, 427, 452
DraIII	CACNNNGTG	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	234
FaeI	CATG	5 cut(s)	317, 333, 383, 427, 486
FaiI	YATR	9 cut(s)	302, 315, 321, 331, 381, 407, 425, 484, 537
FatI	CATG	5 cut(s)	313, 329, 379, 423, 482
FokI	GGATG	2 cut(s)	448, 572
FspBI	CTAG	1 cut(s)	128
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	5 cut(s)	317, 333, 383, 427, 486
HindIII	AAGCTT	2 cut(s)	470, 491
HinfI	GANTC	4 cut(s)	37, 262, 458, 497
HphI	GGTGA	2 cut(s)	495, 519
Hpy166II	GTNNAC	2 cut(s)	49, 546
Hpy188I	TCNGA	5 cut(s)	36, 250, 276, 289, 457
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	2 cut(s)	49, 546
HpyAV	CCTTC	3 cut(s)	111, 271, 362
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	8 cut(s)	86, 218, 259, 319, 379, 396, 488, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	317, 333, 383, 427, 486
Kzo9I	GATC	3 cut(s)	31, 427, 452
LpnPI	CCDG	5 cut(s)	90, 132, 168, 195, 389
LweI	GCATC	3 cut(s)	14, 205, 405
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	3 cut(s)	33, 429, 454
MboI	GATC	3 cut(s)	31, 427, 452
MboII	GAAGA	2 cut(s)	109, 492
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	2 cut(s)	12, 61
MlyI	GAGTC	2 cut(s)	256, 491
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	135, 256, 355, 358, 516
MslI	CAYNNNNRTG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	3 cut(s)	31, 427, 452
NlaIII	CATG	5 cut(s)	317, 333, 383, 427, 486
NspI	RCATGY	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	234
PciI	ACATGT	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	37, 458
PflMI	CCANNNNNTGG	1 cut(s)	353
PleI	GAGTC	2 cut(s)	256, 491
PpsI	GAGTC	2 cut(s)	256, 491
PscI	ACATGT	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	54
Sau3AI	GATC	3 cut(s)	31, 427, 452
SchI	GAGTC	2 cut(s)	256, 491
SetI	ASST	8 cut(s)	106, 127, 171, 352, 373, 474, 495, 508
SfaNI	GCATC	3 cut(s)	14, 205, 405
SfcI	CTRYAG	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	12, 61
SseBI	AGGCCT	1 cut(s)	234
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	140, 173
TasI	AATT	2 cut(s)	12, 61
TfiI	GAWTC	2 cut(s)	37, 458
TscAI	CASTG	3 cut(s)	49, 151, 398
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	3 cut(s)	49, 151, 398
Van91I	CCANNNNNTGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.