Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Forward (+)

18036431 .. 18038596

Gene Structure 2166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24000.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGTTACCGTTGGGCTCTCGTTCCGCTTGTATAAAGGCGATGAACAGAGAGAGAAACATTAGCAACACAAAAACTGGGAAACGCGATTTTCAAATTCCAAGAGCAATTTCGGGAAATCTTCGTTCGTTGTTAGCAGAGAATTCATTTCAGTTGGCTACAAAGAGCCACCCAATGGCATCAAAAGTTGTTTGTTTGAGTCAAGATCAGAACCTCAATGTTCACTCTGATGGAGTTTCTGTTGCGGGAAAACCAGCATTGAAATCAACAAAGAAAGGCGGAGTAGGTGGTAGGAAACCACTAGCGGACCTATCCAATAGGGGGAAGCCAGATTTTACCAAGGCAACAAAAAAGCCTGCTCTCAACAATTTTCCCAAAATCATTGCTGATGCAAGCAAGAAGAAAGGCTCATCTGAAACCTTGCTTCAGAAGACTTCTAATGTTGTGTCAGAGGAATCTTCTTGTGAGTATGAGAAGGAAGGTTTCCTGCATGACCATGAGCAGTGCATGAAAACAATGAGAGAGGCTACCCAGTTGGATGCAATGGATATATACTGGATGCTAAATGGACCAACTCCATGCAAGAAGCTTGCATCTCCACCAAAACCTTCTGAGCTAACCAAATTTGAGCAGGATAGTCTAATAATGTACTTGAAAGAGATACCTGAGGATCAATATATCTTGCTGCCTACCGCGAAGTACTCAGTCTCCTCACCTCCTTTGTCTCCACCTCCATCACCAGATTGGTATACCAATTTACGGATTGGGGTGGACTGTGATATTCAGGTGATGGGATCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

268

Amino Acids

29.35

Weight (kDa)

9.18

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	749
AccII	CGCG	2 cut(s)	87, 695
AciI	CCGC	5 cut(s)	27, 245, 279, 305, 693
AclWI	GGATC	2 cut(s)	678, 802
AcsI	RAATTY	3 cut(s)	96, 142, 623
AcuI	CTGAAG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	650, 701
AfiI	CCNNNNNNNGG	3 cut(s)	175, 321, 759
AgsI	TTSAA	3 cut(s)	95, 262, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AluBI	AGCT	2 cut(s)	589, 616
AluI	AGCT	2 cut(s)	589, 616
Alw26I	GTCTC	2 cut(s)	712, 729
AlwI	GGATC	2 cut(s)	678, 802
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	3 cut(s)	96, 142, 623
AspS9I	GGNCC	2 cut(s)	307, 569
AsuHPI	GGTGA	4 cut(s)	705, 729, 789, 799
AvaII	GGWCC	2 cut(s)	307, 569
AxyI	CCTNAGG	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	672
BccI	CCATC	3 cut(s)	224, 742, 784
BcoDI	GTCTC	2 cut(s)	712, 729
BfaI	CTAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	686
BlsI	GCNGC	1 cut(s)	687
BmcAI	AGTACT	1 cut(s)	701
Bme18I	GGWCC	2 cut(s)	307, 569
BmgT120I	GGNCC	2 cut(s)	307, 569
BmrI	ACTGGG	2 cut(s)	87, 526
BmsI	GCATC	5 cut(s)	188, 379, 529, 549, 602
BmuI	ACTGGG	2 cut(s)	87, 526
BpiI	GAAGAC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	339
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 692, 722
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 321, 759
Bse1I	ACTGG	3 cut(s)	82, 532, 560
Bse21I	CCTNAGG	1 cut(s)	666
Bse3DI	GCAATG	2 cut(s)	381, 549
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	544, 564
BseLI	CCNNNNNNNGG	3 cut(s)	175, 321, 759
BseMI	GCAATG	2 cut(s)	381, 549
BseMII	CTCAG	3 cut(s)	603, 657, 717
BseNI	ACTGG	3 cut(s)	82, 532, 560
BseRI	GAGGAG	1 cut(s)	700
BseXI	GCAGC	1 cut(s)	672
Bsh1236I	CGCG	2 cut(s)	87, 695
BslI	CCNNNNNNNGG	3 cut(s)	175, 321, 759
BsmAI	GTCTC	2 cut(s)	712, 729
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	205, 670, 794
BspACI	CCGC	5 cut(s)	27, 245, 279, 305, 693
BspCNI	CTCAG	3 cut(s)	604, 658, 716
BspFNI	CGCG	2 cut(s)	87, 695
BspPI	GGATC	2 cut(s)	678, 802
BsrDI	GCAATG	2 cut(s)	381, 549
BsrI	ACTGG	3 cut(s)	82, 532, 560
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	3 cut(s)	205, 670, 794
BssNAI	GTATAC	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	12, 776
BstC8I	GCNNGC	3 cut(s)	357, 394, 591
BstDEI	CTNAG	3 cut(s)	612, 666, 703
BstF5I	GGATG	2 cut(s)	544, 564
BstFNI	CGCG	2 cut(s)	87, 695
BstKTI	GATC	3 cut(s)	208, 673, 797
BstMAI	GTCTC	2 cut(s)	712, 729
BstMBI	GATC	3 cut(s)	205, 670, 794
BstUI	CGCG	2 cut(s)	87, 695
BstV1I	GCAGC	1 cut(s)	672
BstV2I	GAAGAC	1 cut(s)	437
BstZ17I	GTATAC	1 cut(s)	750
Bsu36I	CCTNAGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	544, 564
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	3 cut(s)	357, 394, 591
Cfr13I	GGNCC	2 cut(s)	307, 569
Csp6I	GTAC	2 cut(s)	649, 700
CviAII	CATG	4 cut(s)	491, 497, 508, 579
CviJI	RGCY	9 cut(s)	18, 158, 168, 328, 355, 408, 527, 589, 616
CviKI_1	RGCY	9 cut(s)	18, 158, 168, 328, 355, 408, 527, 589, 616
CviQI	GTAC	2 cut(s)	649, 700
DdeI	CTNAG	3 cut(s)	612, 666, 703
DpnI	GATC	3 cut(s)	207, 672, 796
DpnII	GATC	3 cut(s)	205, 670, 794
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	307, 569
Eco57I	CTGAAG	1 cut(s)	410
Eco81I	CCTNAGG	1 cut(s)	666
EcoRI	GAATTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	4 cut(s)	494, 500, 511, 582
FatI	CATG	4 cut(s)	490, 496, 507, 578
FauI	CCCGC	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	1 cut(s)	686
FokI	GGATG	2 cut(s)	551, 571
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	686
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	686
Hin1II	CATG	4 cut(s)	494, 500, 511, 582
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	2 cut(s)	199, 455
HphI	GGTGA	4 cut(s)	705, 729, 789, 799
Hpy166II	GTNNAC	3 cut(s)	223, 750, 772
Hpy188I	TCNGA	6 cut(s)	210, 229, 415, 429, 451, 613
Hpy188III	TCNNGA	2 cut(s)	114, 203
Hpy8I	GTNNAC	3 cut(s)	223, 750, 772
HpyAV	CCTTC	3 cut(s)	469, 473, 618
HpyCH4III	ACNGT	2 cut(s)	12, 776
HpyCH4V	TGCA	7 cut(s)	4, 392, 490, 507, 542, 582, 593
HpyF3I	CTNAG	3 cut(s)	612, 666, 703
Hsp92II	CATG	4 cut(s)	494, 500, 511, 582
Kzo9I	GATC	3 cut(s)	205, 670, 794
Lsp1109I	GCAGC	1 cut(s)	672
LweI	GCATC	5 cut(s)	188, 379, 529, 549, 602
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	3 cut(s)	207, 672, 796
MboI	GATC	3 cut(s)	205, 670, 794
MboII	GAAGA	4 cut(s)	113, 412, 442, 450
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	6 cut(s)	96, 108, 142, 367, 623, 754
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	7 cut(s)	224, 445, 517, 661, 721, 726, 741
MslI	CAYNNNNRTG	2 cut(s)	228, 495
MvnI	CGCG	2 cut(s)	87, 695
NdeII	GATC	3 cut(s)	205, 670, 794
NlaIII	CATG	4 cut(s)	494, 500, 511, 582
PfeI	GAWTC	1 cut(s)	455
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	687
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	307, 569
RsaI	GTAC	2 cut(s)	650, 701
RsaNI	GTAC	2 cut(s)	649, 700
RseI	CAYNNNNRTG	2 cut(s)	228, 495
SatI	GCNGC	1 cut(s)	686
Sau3AI	GATC	3 cut(s)	205, 670, 794
Sau96I	GGNCC	2 cut(s)	307, 569
ScaI	AGTACT	1 cut(s)	701
SchI	GAGTC	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	5 cut(s)	188, 379, 529, 549, 602
SinI	GGWCC	2 cut(s)	307, 569
SmiMI	CAYNNNNRTG	2 cut(s)	228, 495
Sse9I	AATT	6 cut(s)	96, 108, 142, 367, 623, 754
SsiI	CCGC	5 cut(s)	27, 245, 279, 305, 693
SspMI	CTAG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	12, 776
TasI	AATT	6 cut(s)	96, 108, 142, 367, 623, 754
TatI	WGTACW	2 cut(s)	648, 699
TfiI	GAWTC	1 cut(s)	455
TscAI	CASTG	1 cut(s)	509
TseI	GCWGC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	59, 135, 524
TspGWI	ACGGA	1 cut(s)	775
TspRI	CASTG	1 cut(s)	509
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	307, 569
XapI	RAATTY	3 cut(s)	96, 142, 623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	741
XmiI	GTMKAC	1 cut(s)	749
XspI	CTAG	1 cut(s)	302
ZrmI	AGTACT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.