Rh3AG249500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001257
Physical Location & Seq
Forward (+)
26842185 .. 26843790
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG249500.1

Sequence Viewer

Length: 690 bp
ATGGCATCAACAATTGGTCGTTTGTTTCAAGATCAGAATCTCAGTGTTCACTCTAATGGAAATTCTGCTGTAGGAAAGGGTGGTGCAAAAACACAGAAGAAAGCTGGGTTTGGTGGAAGGAAACCTCTAGGAGATGTATCGAACGCTGGGAAGCCTGATTGTTCCAAGGTGTCGAAAAAGCCTGCTCTTACCAATGTTTCTGAAATCATTGCTGATGCAAGCAACAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAGTCGGAAGGCACTATCTGATGTGTCTAACACAGTCAAGCCACCTGTGCATAAGAAGTCAAGTGTTGCGGCACAACCACCTTGTGGTTTTGAGGAGGAAGTTTCTCAGTTTCGTAAAGTTGAGCTGGATAGTCCCATGATGTACTTGGATTTGAAAGAGATGCCTGAGCTGTCTATCAAGCTTGACTCTTCACCTCATTGCAAGTCTCCACTATCACCAAATCATACCAAGTCCACTTGGGTTTGGGATGATTGTGATTTCCAGGCAACAAAACAAGTAATAGCAATCCTTTGGAAAATTTTGAGGAGCAAGTGCCAGGCAACTGATGGATGGCCAATAGTAATGAGAACTTCTAATTTTGTCATCTTCTTTAGCAGCAAAACAAGTAATAGCAAACTTTCGGAAAATTTTGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.96

Weight (kDa)

9.46

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 602
AcsI RAATTY 3 cut(s) 61, 567, 676
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 2 cut(s) 29, 424
AjnI CCWGG 2 cut(s) 531, 585
AluBI AGCT 4 cut(s) 104, 394, 439, 451
AluI AGCT 4 cut(s) 104, 394, 439, 451
Alw26I GTCTC 1 cut(s) 480
AoxI GGCC 2 cut(s) 232, 602
ApeKI GCWGC 1 cut(s) 645
ApoI RAATTY 3 cut(s) 61, 567, 676
AsuHPI GGTGA 2 cut(s) 453, 477
BalI TGGCCA 1 cut(s) 604
BauI CACGAG 1 cut(s) 264
BbvI GCAGC 1 cut(s) 657
BccI CCATC 2 cut(s) 590, 594
BciT130I CCWGG 2 cut(s) 533, 587
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 339, 646
BlsI GCNGC 2 cut(s) 340, 647
Bme1390I CCNGG 2 cut(s) 533, 587
BmrFI CCNGG 2 cut(s) 533, 587
BmsI GCATC 3 cut(s) 14, 205, 420
Bpu10I CCTNAGC 1 cut(s) 435
BsaBI GATNNNNATC 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 165, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse3DI GCAATG 2 cut(s) 207, 466
Bse8I GATNNNNATC 1 cut(s) 36
BseBI CCWGG 2 cut(s) 533, 587
BseDI CCNNGG 2 cut(s) 165, 246
BseGI GGATG 2 cut(s) 523, 605
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 2 cut(s) 207, 466
BseMII CTCAG 3 cut(s) 55, 389, 426
BseRI GAGGAG 2 cut(s) 377, 589
BseXI GCAGC 1 cut(s) 657
BseYI CCCAGC 2 cut(s) 104, 146
BsgI GTGCAG 1 cut(s) 278
BshFI GGCC 2 cut(s) 234, 604
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 2 cut(s) 234, 604
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 234, 604
BspCNI CTCAG 3 cut(s) 54, 388, 427
BsrDI GCAATG 2 cut(s) 207, 466
BssECI CCNNGG 2 cut(s) 165, 246
BssMI GATC 1 cut(s) 31
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 533, 587
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 463
BstC8I GCNNGC 2 cut(s) 183, 220
BstDEI CTNAG 3 cut(s) 41, 375, 435
BstF5I GGATG 2 cut(s) 523, 605
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 2 cut(s) 533, 587
BstSCI CCNGG 2 cut(s) 531, 585
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 657
BsuRI GGCC 2 cut(s) 234, 604
BtsCI GGATG 2 cut(s) 523, 605
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 183, 220
Csp6I GTAC 1 cut(s) 412
CviAII CATG 1 cut(s) 406
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 3 cut(s) 41, 375, 435
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
DraIII CACNNNGTG 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 602
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 531, 585
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 409
FaiI YATR 3 cut(s) 321, 407, 495
FaqI GGGAC 1 cut(s) 387
FatI CATG 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 339, 646
FokI GGATG 2 cut(s) 530, 612
Fsp4HI GCNGC 2 cut(s) 339, 646
FspBI CTAG 1 cut(s) 128
GluI GCNGC 2 cut(s) 339, 646
GsaI CCCAGC 2 cut(s) 108, 150
HaeIII GGCC 2 cut(s) 234, 604
Hin1II CATG 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 37, 262, 455
HphI GGTGA 2 cut(s) 453, 477
Hpy166II GTNNAC 2 cut(s) 49, 504
Hpy188I TCNGA 6 cut(s) 36, 202, 250, 276, 289, 673
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 2 cut(s) 49, 504
HpyAV CCTTC 2 cut(s) 111, 271
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 5 cut(s) 86, 218, 259, 319, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 3 cut(s) 41, 375, 435
Hsp92II CATG 1 cut(s) 409
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 576
Lsp1109I GCAGC 1 cut(s) 657
LweI GCATC 3 cut(s) 14, 205, 420
MaeI CTAG 1 cut(s) 128
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 3 cut(s) 109, 450, 628
MfeI CAATTG 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 604
MluCI AATT 5 cut(s) 12, 61, 567, 625, 676
MluNI TGGCCA 1 cut(s) 604
MlyI GAGTC 2 cut(s) 256, 449
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 7 cut(s) 135, 256, 355, 358, 474, 567, 676
Mox20I TGGCCA 1 cut(s) 604
MscI TGGCCA 1 cut(s) 604
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 604
MspR9I CCNGG 2 cut(s) 533, 587
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 2 cut(s) 533, 587
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 409
PceI AGGCCT 1 cut(s) 234
PfeI GAWTC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 2 cut(s) 340, 647
PleI GAGTC 2 cut(s) 256, 449
PpsI GAGTC 2 cut(s) 256, 449
Psp6I CCWGG 2 cut(s) 531, 585
PspFI CCCAGC 2 cut(s) 104, 146
PspGI CCWGG 2 cut(s) 531, 585
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 54
SatI GCNGC 2 cut(s) 339, 646
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 2 cut(s) 256, 449
ScrFI CCNGG 2 cut(s) 533, 587
SetI ASST 9 cut(s) 106, 127, 171, 316, 352, 396, 441, 453, 466
SfaNI GCATC 3 cut(s) 14, 205, 420
SfcI CTRYAG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 5 cut(s) 12, 61, 567, 625, 676
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 1 cut(s) 338
SspMI CTAG 1 cut(s) 128
StuI AGGCCT 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 531, 585
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 140, 173
TasI AATT 5 cut(s) 12, 61, 567, 625, 676
TatI WGTACW 1 cut(s) 411
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 37
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 645
TspRI CASTG 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 353
XapI RAATTY 3 cut(s) 61, 567, 676
XcmI CCANNNNNNNNNTGG 2 cut(s) 412, 593
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.