Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Forward (+)

8593456 .. 8595583

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1075900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCGTCAACGCTTGGTACTTTGTTCCAAGATCAGAATCTGAGTGTTCGTTCTAAGGGAGATTCTCTTGTGGGAACAGGTGATGCCTTCAAAGCGCAAAGGAAAGGGGGGCTTGGTGGAAGGAAACCACTTGGTGATCTATCGAATTCAGGGAAGCCTGCGGCTCTGACTCAGGCATCAAAAAAGCAGTCTTCCAAGGTAACCATTTGTGGTGATGCAAGCAATAACAAAGGCTTGTCTAAAGCCTCAGATAAAGTTCAGACCCGTTGCAGGAATGCTTTACGTGATATATCAAACACACGGGATGCACTGGTGAAGAACAACACAAAGCAGAGGGTTGTGACAAAGCAGCCTGTTTGTCCTGATAACATTGCAGAGGAAGGGTTTCTGCACAACCATCAGGAGTGCCTGAAAGCACAAGACATGGATGAGATTCGGCAGTTTCATCAGTTTCTGATGGCACTTGGAGTAGATACCGATTCTTCCAAGGAGCGTACATCTCCATGTGTGCCTTCACTGCCAAGTAAATCTGAGCCCAAGAGTCCGAGGAATTGGGATTTGGAAGAGATACCTGAGGATCGAAACCCCTGGTTGTCTGACAACCTTGACTCTCCACCTCCTTGCAAGACTCCAAAGTCACCAAATGGCTACGCTGATTCCCTTTTCATTTGGGAGGACTGTGACTTCAAGTTGACAAACACACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

25.76

Weight (kDa)

8.43

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	634
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	585
AcsI	RAATTY	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	2 cut(s)	19, 496
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	91, 688
AjnI	CCWGG	1 cut(s)	587
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AlwI	GGATC	1 cut(s)	585
AlwNI	CAGNNNCTG	2 cut(s)	40, 454
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	145
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	97
AsuHPI	GGTGA	5 cut(s)	92, 146, 224, 325, 630
AxyI	CCTNAGG	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	537
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	2 cut(s)	405, 451
BciT130I	CCWGG	1 cut(s)	589
BisI	GCNGC	2 cut(s)	162, 350
BlsI	GCNGC	2 cut(s)	163, 351
Bme1390I	CCNGG	1 cut(s)	589
BmrFI	CCNGG	1 cut(s)	589
BmsI	GCATC	4 cut(s)	73, 185, 205, 295
BpiI	GAAGAC	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	195, 486, 545, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	315
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	589
BseDI	CCNNGG	4 cut(s)	195, 486, 545, 587
BseGI	GGATG	2 cut(s)	310, 433
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	5 cut(s)	32, 185, 261, 522, 564
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	31, 136, 577
BspACI	CCGC	1 cut(s)	161
BspCNI	CTCAG	5 cut(s)	33, 184, 260, 523, 565
BspPI	GGATC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	4 cut(s)	195, 486, 545, 587
BssMI	GATC	3 cut(s)	31, 136, 577
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	195, 486
Bst2UI	CCWGG	1 cut(s)	589
Bst4CI	ACNGT	1 cut(s)	680
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	159, 220
BstDEI	CTNAG	6 cut(s)	41, 54, 171, 247, 531, 573
BstEII	GGTNACC	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	310, 433
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	3 cut(s)	34, 139, 580
BstMBI	GATC	3 cut(s)	31, 136, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 517
BstNI	CCWGG	1 cut(s)	589
BstPI	GGTNACC	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	310, 433
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	2 cut(s)	308, 515
Cac8I	GCNNGC	2 cut(s)	159, 220
CaiI	CAGNNNCTG	2 cut(s)	40, 454
CfoI	GCGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	18, 495
CviAII	CATG	2 cut(s)	424, 504
CviJI	RGCY	8 cut(s)	112, 157, 164, 234, 245, 352, 535, 648
CviKI_1	RGCY	8 cut(s)	112, 157, 164, 234, 245, 352, 535, 648
CviQI	GTAC	2 cut(s)	18, 495
DdeI	CTNAG	6 cut(s)	41, 54, 171, 247, 531, 573
DpnI	GATC	3 cut(s)	33, 138, 579
DpnII	GATC	3 cut(s)	31, 136, 577
DraIII	CACNNNGTG	1 cut(s)	134
DrdI	GACNNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	195, 486
Eco24I	GRGCYC	1 cut(s)	537
Eco81I	CCTNAGG	1 cut(s)	573
Eco91I	GGTNACC	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	587
EcoT14I	CCWWGG	2 cut(s)	195, 486
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	2 cut(s)	195, 486
FaeI	CATG	2 cut(s)	427, 507
FaiI	YATR	4 cut(s)	290, 425, 505, 706
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	2 cut(s)	423, 503
Fnu4HI	GCNGC	2 cut(s)	162, 350
FokI	GGATG	2 cut(s)	317, 440
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	2 cut(s)	162, 350
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	2 cut(s)	162, 350
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	427, 507
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	2 cut(s)	9, 693
HindII	GTYRAC	2 cut(s)	9, 693
HinfI	GANTC	9 cut(s)	37, 62, 169, 433, 479, 541, 608, 628, 656
HphI	GGTGA	5 cut(s)	92, 146, 224, 325, 630
Hpy166II	GTNNAC	2 cut(s)	9, 693
Hpy188I	TCNGA	9 cut(s)	36, 42, 168, 250, 261, 456, 532, 546, 598
Hpy188III	TCNNGA	2 cut(s)	362, 401
Hpy8I	GTNNAC	2 cut(s)	9, 693
HpyAV	CCTTC	4 cut(s)	97, 114, 374, 522
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	6 cut(s)	218, 270, 308, 374, 391, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 517
HpyF3I	CTNAG	6 cut(s)	41, 54, 171, 247, 531, 573
HpySE526I	ACGT	1 cut(s)	283
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	427, 507
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	3 cut(s)	31, 136, 577
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	4 cut(s)	73, 185, 205, 295
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	4 cut(s)	199, 340, 636, 680
MalI	GATC	3 cut(s)	33, 138, 579
MboI	GATC	3 cut(s)	31, 136, 577
MboII	GAAGA	4 cut(s)	183, 328, 474, 575
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	2 cut(s)	145, 550
MlyI	GAGTC	4 cut(s)	163, 550, 602, 622
MnlI	CCTC	7 cut(s)	256, 327, 370, 540, 568, 627, 667
MroXI	GAANNNNTTC	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	502
MspR9I	CCNGG	1 cut(s)	589
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	589
MwoI	GCNNNNNNNGC	2 cut(s)	92, 517
NdeII	GATC	3 cut(s)	31, 136, 577
NlaIII	CATG	2 cut(s)	427, 507
NmuCI	GTSAC	3 cut(s)	340, 636, 680
PctI	GAATGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	5 cut(s)	37, 62, 433, 479, 656
PkrI	GCNGC	2 cut(s)	163, 351
PleI	GAGTC	4 cut(s)	163, 549, 602, 622
PpsI	GAGTC	4 cut(s)	163, 549, 602, 622
Ppu21I	YACGTR	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	587
PspEI	GGTNACC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	587
PstNI	CAGNNNCTG	2 cut(s)	40, 454
RsaI	GTAC	2 cut(s)	19, 496
RsaNI	GTAC	2 cut(s)	18, 495
RseI	CAYNNNNRTG	1 cut(s)	502
SatI	GCNGC	2 cut(s)	162, 350
Sau3AI	GATC	3 cut(s)	31, 136, 577
SchI	GAGTC	4 cut(s)	163, 550, 602, 622
ScrFI	CCNGG	1 cut(s)	589
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	6 cut(s)	82, 201, 286, 574, 606, 619
SfaNI	GCATC	4 cut(s)	73, 185, 205, 295
SmiMI	CAYNNNNRTG	1 cut(s)	502
Sse9I	AATT	2 cut(s)	145, 550
SsiI	CCGC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	587
StyI	CCWWGG	2 cut(s)	195, 486
TaaI	ACNGT	1 cut(s)	680
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	143, 580
TasI	AATT	2 cut(s)	145, 550
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	5 cut(s)	37, 62, 433, 479, 656
TscAI	CASTG	2 cut(s)	315, 522
TseFI	GTSAC	3 cut(s)	340, 636, 680
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	3 cut(s)	340, 636, 680
TspDTI	ATGAA	2 cut(s)	434, 655
TspRI	CASTG	2 cut(s)	315, 522
XapI	RAATTY	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.