Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Forward (+)

9766705 .. 9768940

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G058200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCATCAACAATTGGTCATTTGTTTCAAGATCAGAATCTCATTGTTCACTCTCATGGAGCTTCTCTTGGGAGGAAAGGTGATACCTTCAGAAAACAAAGGAAAGGGGGGCTTGGTGCAAGGAAACCTCTTGGTGATCTATCGAATTCAGGGAAGCCTGCTCTCACCCAGGCGTCAAAAAAGCAGCTTTCCAAGGAAATGGTTCATGATGCAAGCAATAAGAAAGCCTTTTCTAAGGCCTCAGATAAGGTTCAGACCCGTAGCAGGAAGGCTCTATCTGACATTTCAAACTCACAGGCACCACTAGTGCAGAAGAAGCACAACATGAAGCTGAGTGTTGTGGCAGAGGAGGCTCTTTGTCCTGGTGCTATTGCAGAGGAACGATTTCTGCACAATCATGAAGAATGCATTAAAGCACAAACCCAGGCTATGGACATGGATCATTTTCTGATGACACTTGGAATACATAAGGATTCTTGCAAGAATCTTGCATCTCCCTGGGCAGCACCTGCATCGTCAAGTAAATTTGAGCCAGAGTCTCCCTCGAGGTATTTGCATTTGGAAGAGATGAATGAGCTTGAACCATCCTGGTTGTCCGAAAAGCTTGACTCACCTCCTTTCTCTCCAAAATCACCAAGTTTCCACACTGTTTCCTCTTTGTTTTCGGAGGACTGTGACTTCCAGTTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.4

Weight (kDa)

8.61

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	517
AbsI	CCTCGAGG	1 cut(s)	544
Acc36I	ACCTGC	1 cut(s)	517
AccB1I	GGYRCC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	430
AclWI	GGATC	1 cut(s)	447
AcsI	RAATTY	2 cut(s)	145, 524
AcuI	CTGAAG	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	264, 430
AgsI	TTSAA	3 cut(s)	29, 288, 581
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	5 cut(s)	168, 361, 423, 497, 587
AluBI	AGCT	5 cut(s)	62, 187, 331, 577, 604
AluI	AGCT	5 cut(s)	62, 187, 331, 577, 604
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	1 cut(s)	447
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	184, 503
ApoI	RAATTY	2 cut(s)	145, 524
Asp700I	GAANNNNTTC	2 cut(s)	201, 384
AsuHPI	GGTGA	5 cut(s)	92, 146, 157, 603, 624
AvaI	CYCGRG	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	196, 515
BccI	CCATC	1 cut(s)	592
BcgI	CGANNNNNNTGC	4 cut(s)	495, 529, 535, 569
BciT130I	CCWGG	5 cut(s)	170, 363, 425, 499, 589
BcoDI	GTCTC	1 cut(s)	543
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	2 cut(s)	185, 504
BlsI	GCNGC	2 cut(s)	186, 505
Bme1390I	CCNGG	5 cut(s)	170, 363, 425, 499, 589
BmeT110I	CYCGRG	1 cut(s)	544
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	5 cut(s)	170, 363, 425, 499, 589
BmsI	GCATC	4 cut(s)	14, 199, 500, 521
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	5 cut(s)	168, 192, 423, 497, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 430
Bse1I	ACTGG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	5 cut(s)	170, 363, 425, 499, 589
BseDI	CCNNGG	5 cut(s)	168, 192, 423, 497, 498
BseGI	GGATG	1 cut(s)	584
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	264, 430
BseMII	CTCAG	2 cut(s)	255, 323
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	196, 515
BsgI	GTGCAG	2 cut(s)	329, 374
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	264, 430
BsmAI	GTCTC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	544
Bsp143I	GATC	3 cut(s)	31, 136, 439
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	254, 324
BspHI	TCATGA	2 cut(s)	205, 397
BspLI	GGNNCC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	682
BssECI	CCNNGG	5 cut(s)	168, 192, 423, 497, 498
BssMI	GATC	3 cut(s)	31, 136, 439
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	5 cut(s)	170, 363, 425, 499, 589
Bst4CI	ACNGT	2 cut(s)	649, 674
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	159, 214
BstDEI	CTNAG	3 cut(s)	234, 241, 332
BstF5I	GGATG	1 cut(s)	584
BstKTI	GATC	3 cut(s)	34, 139, 442
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	3 cut(s)	31, 136, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 350, 509
BstNI	CCWGG	5 cut(s)	170, 363, 425, 499, 589
BstSCI	CCNGG	5 cut(s)	168, 361, 423, 497, 587
BstV1I	GCAGC	2 cut(s)	196, 515
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	584
BtsIMutI	CAGTG	1 cut(s)	645
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	2 cut(s)	159, 214
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	2 cut(s)	205, 397
CseI	GACGC	1 cut(s)	162
CviAII	CATG	5 cut(s)	56, 206, 325, 398, 436
DdeI	CTNAG	3 cut(s)	234, 241, 332
DpnI	GATC	3 cut(s)	33, 138, 441
DpnII	GATC	3 cut(s)	31, 136, 439
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	5 cut(s)	168, 361, 423, 497, 587
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	5 cut(s)	59, 209, 328, 401, 439
FaiI	YATR	7 cut(s)	57, 207, 326, 399, 431, 437, 468
FalI	AAGNNNNNCTT	4 cut(s)	96, 128, 212, 244
FatI	CATG	5 cut(s)	55, 205, 324, 397, 435
Fnu4HI	GCNGC	2 cut(s)	185, 504
FokI	GGATG	1 cut(s)	571
Fsp4HI	GCNGC	2 cut(s)	185, 504
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	2 cut(s)	185, 504
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	5 cut(s)	59, 209, 328, 401, 439
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	5 cut(s)	37, 473, 484, 536, 608
HphI	GGTGA	5 cut(s)	92, 146, 157, 603, 624
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	8 cut(s)	36, 92, 244, 255, 280, 450, 598, 667
Hpy188III	TCNNGA	3 cut(s)	29, 206, 398
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	97, 262
HpyCH4III	ACNGT	2 cut(s)	649, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 350, 509
HpyF3I	CTNAG	3 cut(s)	234, 241, 332
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	5 cut(s)	59, 209, 328, 401, 439
Kzo9I	GATC	3 cut(s)	31, 136, 439
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	196, 515
LweI	GCATC	4 cut(s)	14, 199, 500, 521
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	3 cut(s)	33, 138, 441
MboI	GATC	3 cut(s)	31, 136, 439
MboII	GAAGA	3 cut(s)	325, 413, 575
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	3 cut(s)	12, 145, 524
MlyI	GAGTC	2 cut(s)	545, 602
Mph1103I	ATGCAT	1 cut(s)	410
MroXI	GAANNNNTTC	2 cut(s)	201, 384
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	2 cut(s)	54, 396
MspR9I	CCNGG	5 cut(s)	170, 363, 425, 499, 589
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	5 cut(s)	170, 363, 425, 499, 589
MwoI	GCNNNNNNNGC	3 cut(s)	316, 350, 509
NdeII	GATC	3 cut(s)	31, 136, 439
NlaIII	CATG	5 cut(s)	59, 209, 328, 401, 439
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	674
NsiI	ATGCAT	1 cut(s)	410
PaeR7I	CTCGAG	1 cut(s)	544
PagI	TCATGA	2 cut(s)	205, 397
PaqCI	CACCTGC	1 cut(s)	517
PasI	CCCWGGG	1 cut(s)	498
PceI	AGGCCT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	410
PdmI	GAANNNNTTC	2 cut(s)	201, 384
PfeI	GAWTC	3 cut(s)	37, 473, 484
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	186, 505
PleI	GAGTC	2 cut(s)	544, 602
PpsI	GAGTC	2 cut(s)	544, 602
Psp6I	CCWGG	5 cut(s)	168, 361, 423, 497, 587
PspGI	CCWGG	5 cut(s)	168, 361, 423, 497, 587
PspN4I	GGNNCC	1 cut(s)	300
PspXI	VCTCGAGB	1 cut(s)	544
PstNI	CAGNNNCTG	1 cut(s)	509
RseI	CAYNNNNRTG	2 cut(s)	54, 396
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	185, 504
Sau3AI	GATC	3 cut(s)	31, 136, 439
SchI	GAGTC	2 cut(s)	545, 602
ScrFI	CCNGG	5 cut(s)	170, 363, 425, 499, 589
SfaNI	GCATC	4 cut(s)	14, 199, 500, 521
Sfr274I	CTCGAG	1 cut(s)	544
SlaI	CTCGAG	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	54, 396
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SpeI	ACTAGT	1 cut(s)	304
Sse9I	AATT	3 cut(s)	12, 145, 524
SseBI	AGGCCT	1 cut(s)	239
SspMI	CTAG	1 cut(s)	305
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	5 cut(s)	168, 361, 423, 497, 587
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	649, 674
TaqI	TCGA	2 cut(s)	143, 545
TasI	AATT	3 cut(s)	12, 145, 524
TfiI	GAWTC	3 cut(s)	37, 473, 484
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	2 cut(s)	184, 503
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	4 cut(s)	194, 341, 414, 584
TspRI	CASTG	1 cut(s)	652
Van91I	CCANNNNNTGG	1 cut(s)	430
XapI	RAATTY	2 cut(s)	145, 524
XhoI	CTCGAG	1 cut(s)	544
XmnI	GAANNNNTTC	2 cut(s)	201, 384
XspI	CTAG	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.