Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Forward (+)

28794161 .. 28794711

Gene Structure 551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44756

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCATCAACAATTGGTCGTTTGTTTCAAGATCAGAATCTCAGTGTTCACTCTAATGGAAATTCTGCTGTAGGAAAGGGTGGTGCAAAAACACAGAAGAAAGCTGGGTTTGGTGGAAGGAAACCTCTAGGAGATGTATCGAACGCTGGGAAGCCTGATTGTTCCAAGGTGTCGAAAAAGCCTGCTCTTACCAATGTTTCTGAAATCATTGCTGATGCAAGCAACAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAGTCGGAAGGCACTATCTGATGTGTCTAACACAGTCAAGCCACCTGTGCATAAGAAGTCAAGTGTTGCGGCACAACCACCTTGTGGTTTTGAGGAGGAAGGTTTCCTGCATGACCATCAACAGTGCATCAAATCTATGAGAAAGGCTAATCACATGGATCAAATGGATTTTTTTATGATGATACAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

153

Amino Acids

16.31

Weight (kDa)

9.8

Isoelectric Point (pI)

18.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	61
AdeI	CACNNNGTG	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AlwI	GGATC	1 cut(s)	435
AoxI	GGCC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	61
BauI	CACGAG	1 cut(s)	264
BccI	CCATC	1 cut(s)	393
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmsI	GCATC	3 cut(s)	14, 205, 405
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	165, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	165, 246
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	377
BseYI	CCCAGC	2 cut(s)	104, 146
BsgI	GTGCAG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	353
BsnI	GGCC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	31, 427
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	165, 246
BssMI	GATC	2 cut(s)	31, 427
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	304, 393
BstC8I	GCNNGC	2 cut(s)	183, 220
BstDEI	CTNAG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	34, 430
BstMBI	GATC	2 cut(s)	31, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	49, 398
Cac8I	GCNNGC	2 cut(s)	183, 220
CviAII	CATG	2 cut(s)	380, 424
CviJI	RGCY	7 cut(s)	104, 154, 181, 234, 245, 310, 416
CviKI_1	RGCY	7 cut(s)	104, 154, 181, 234, 245, 310, 416
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	33, 429
DpnII	GATC	2 cut(s)	31, 427
DraIII	CACNNNGTG	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	383, 427
FaiI	YATR	5 cut(s)	321, 381, 407, 425, 446
FatI	CATG	2 cut(s)	379, 423
Fnu4HI	GCNGC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	2 cut(s)	108, 150
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	383, 427
HinfI	GANTC	2 cut(s)	37, 262
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	5 cut(s)	36, 202, 250, 276, 289
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	111, 271, 362
HpyCH4III	ACNGT	2 cut(s)	304, 393
HpyCH4V	TGCA	6 cut(s)	86, 218, 259, 319, 379, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	383, 427
Kzo9I	GATC	2 cut(s)	31, 427
LpnPI	CCDG	6 cut(s)	90, 132, 168, 195, 327, 389
LweI	GCATC	3 cut(s)	14, 205, 405
MaeI	CTAG	1 cut(s)	128
MalI	GATC	2 cut(s)	33, 429
MboI	GATC	2 cut(s)	31, 427
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	2 cut(s)	12, 61
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	4 cut(s)	135, 256, 355, 358
MslI	CAYNNNNRTG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	2 cut(s)	31, 427
NlaIII	CATG	2 cut(s)	383, 427
PceI	AGGCCT	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PspFI	CCCAGC	2 cut(s)	104, 146
RseI	CAYNNNNRTG	1 cut(s)	54
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	2 cut(s)	31, 427
SchI	GAGTC	1 cut(s)	256
SetI	ASST	6 cut(s)	106, 127, 171, 316, 352, 373
SfaNI	GCATC	3 cut(s)	14, 205, 405
SfcI	CTRYAG	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	12, 61
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	304, 393
TaqI	TCGA	2 cut(s)	140, 173
TasI	AATT	2 cut(s)	12, 61
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	37
TscAI	CASTG	2 cut(s)	49, 398
TspRI	CASTG	2 cut(s)	49, 398
Van91I	CCANNNNNTGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	61
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.