Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

4000699 .. 4002742

Gene Structure 2044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCCAACACAATTCTTCGCGGGCAGATGATTTTTCAGGACGAGAATGCATTGGCGGCCCTTGGAAAAAAGGCGGTTGCTGCTGGAAAAGGTAAGAGTTCACTCGCAGCTCCAAAGAAAAATGGGGCGGGTTTCGGAAGCCGCAAGGCTCTCCATGACATTACAAACAAGTCAAAGTTGCAACCTCAAGCTTCATCCACGACGAGGAAGGATGTTGAGGGAGTGGATTTTGACATAGCAAAGGAAGGTTTCTTGCATGATCACAGCAAATGCATTGAAGAACAACAACAAGACCAGTGGGATAGCTACTTCTCTGAACACATCATCCTGCATGGACATGAGACAAACATCAAAGAAGGGGTTCCTCAATACAATAATATTCAAGAGATTGATGCTGAGAACAGCTGGGATGAACTCAAAGAGATACCAATGGAGGAGTTTTCCGATCTGCTGGAATGCTCAACTCAATGGCGCTCACCACCAGACTCACTAAGCCATCACCATTCTTCGTTACCTTCATCGCCTTTGCCATGGCATTTTGAAACTGTAGAATTCAAGCTCAAGGAGGATGAAGACACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0034086 GO:0034090 GO:0045132 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.8

Weight (kDa)

5.14

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	5 cut(s)	21, 56, 74, 128, 142
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	4 cut(s)	278, 383, 542, 556
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	5 cut(s)	110, 191, 306, 405, 559
AluI	AGCT	5 cut(s)	110, 191, 306, 405, 559
Alw26I	GTCTC	1 cut(s)	335
AoxI	GGCC	2 cut(s)	3, 57
ApeKI	GCWGC	2 cut(s)	80, 107
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	468, 491
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	67, 119
BccI	CCATC	1 cut(s)	504
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	475
BisI	GCNGC	4 cut(s)	57, 81, 108, 142
BlsI	GCNGC	4 cut(s)	58, 82, 109, 143
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	363
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	579
BpuEI	CTTGAG	2 cut(s)	171, 545
BsaJI	CCNNGG	2 cut(s)	61, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	61, 530
BseGI	GGATG	5 cut(s)	194, 217, 324, 415, 574
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	2 cut(s)	67, 119
BseYI	CCCAGC	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	5, 59
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	335
BsmI	GAATGC	2 cut(s)	52, 461
BsnI	GGCC	2 cut(s)	5, 59
Bsp143I	GATC	2 cut(s)	259, 445
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	5 cut(s)	21, 56, 74, 128, 142
BspANI	GGCC	2 cut(s)	5, 59
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	61, 530
BssMI	GATC	2 cut(s)	259, 445
BssT1I	CCWWGG	2 cut(s)	61, 530
Bst4CI	ACNGT	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	396, 491
BstDSI	CCRYGG	1 cut(s)	530
BstF5I	GGATG	5 cut(s)	194, 217, 324, 415, 574
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	2 cut(s)	262, 448
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	259, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 80
BstSFI	CTRYAG	1 cut(s)	546
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	67, 119
BstV2I	GAAGAC	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	5, 59
BtgI	CCRYGG	1 cut(s)	530
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	5 cut(s)	194, 217, 324, 415, 574
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	58
CspCI	CAANNNNNGTGG	2 cut(s)	278, 313
CviAII	CATG	5 cut(s)	155, 257, 332, 338, 531
DdeI	CTNAG	2 cut(s)	396, 491
DpnI	GATC	2 cut(s)	261, 447
DpnII	GATC	2 cut(s)	259, 445
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	61, 530
EcoRI	GAATTC	1 cut(s)	551
EcoT14I	CCWWGG	2 cut(s)	61, 530
EcoT22I	ATGCAT	2 cut(s)	52, 275
ErhI	CCWWGG	2 cut(s)	61, 530
FaeI	CATG	5 cut(s)	158, 260, 335, 341, 534
FaiI	YATR	6 cut(s)	156, 236, 258, 333, 339, 532
FatI	CATG	5 cut(s)	154, 256, 331, 337, 530
FauI	CCCGC	2 cut(s)	14, 121
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	57, 81, 108, 142
FokI	GGATG	5 cut(s)	181, 224, 311, 422, 581
Fsp4HI	GCNGC	4 cut(s)	57, 81, 108, 142
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	4 cut(s)	57, 81, 108, 142
GsaI	CCCAGC	1 cut(s)	409
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	2 cut(s)	5, 59
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	5 cut(s)	158, 260, 335, 341, 534
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	1 cut(s)	485
HphI	GGTGA	2 cut(s)	468, 491
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	3 cut(s)	137, 316, 445
Hpy188III	TCNNGA	2 cut(s)	38, 383
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	4 cut(s)	202, 239, 350, 525
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	50, 181, 256, 273, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 80
HpyF3I	CTNAG	2 cut(s)	396, 491
Hsp92II	CATG	5 cut(s)	158, 260, 335, 341, 534
HspAI	GCGC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	259, 445
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	23, 69, 308, 341, 391, 437, 495
Lsp1109I	GCAGC	2 cut(s)	67, 119
LweI	GCATC	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	510
MalI	GATC	2 cut(s)	261, 447
MboI	GATC	2 cut(s)	259, 445
MboII	GAAGA	4 cut(s)	8, 290, 498, 584
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	12, 551
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	6 cut(s)	195, 198, 211, 375, 427, 559
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	52, 275
MroXI	GAANNNNTTC	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	405
Mva1269I	GAATGC	2 cut(s)	52, 461
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	56, 80
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	2 cut(s)	259, 445
NlaIII	CATG	5 cut(s)	158, 260, 335, 341, 534
NlaIV	GGNNCC	1 cut(s)	363
NsiI	ATGCAT	2 cut(s)	52, 275
PctI	GAATGC	2 cut(s)	52, 461
PdmI	GAANNNNTTC	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	58, 82, 109, 143
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	336
SatI	GCNGC	4 cut(s)	57, 81, 108, 142
Sau3AI	GATC	2 cut(s)	259, 445
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	479
SetI	ASST	9 cut(s)	94, 112, 187, 193, 250, 308, 407, 517, 561
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	186, 560
SmoI	CTYRAG	2 cut(s)	186, 560
Sse9I	AATT	2 cut(s)	12, 551
SsiI	CCGC	5 cut(s)	21, 56, 74, 128, 142
SspI	AATATT	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	61, 530
TaaI	ACNGT	1 cut(s)	547
TasI	AATT	2 cut(s)	12, 551
TauI	GCSGC	2 cut(s)	59, 144
TscAI	CASTG	1 cut(s)	302
TseI	GCWGC	2 cut(s)	80, 107
TspDTI	ATGAA	4 cut(s)	183, 426, 507, 585
TspRI	CASTG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	360
Zsp2I	ATGCAT	2 cut(s)	52, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.