Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Reverse (-)

33131149 .. 33133854

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCATCAACAATTGGTCGTTTGTTTCAAGATCAGAATCTCAGTGTTCACTCTAATGGAAATTCTGCTGTAGGAAAGGGTGGTGCAAAAACACAGAAGAAAGCTGGGTTTGGTGGAAGGAAACCTCTAGTAGATGTATCGAACATTGGGAAGCCTGATTTTTCCAAGGTGTCGAAAAAGCCTGCTCTTACCAATGTTTCTGAAATCATTGCTGATGCAAGCAACAAGAAAGGCCTTTCTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAATCGGAAGGCACTATCTGATGTGTCTAACACAGTCAAGCCACCTGTGCATAAGAAGTCAAGGGTTGCGGCACAACCACCTTGTGGTTTTGAGGAGGAAGGTTTCCTGCATGACCATCAACAGTGCATCAAATCTATGAGAAAGGCTAATCACATGGATCAAATGGATTTTTTTATGATGATACAAGGATCAGATTCATCCAAGAAGCTTCTGTCTCCATGTGCAGCTTCTCAGTTTCTTAAAGTTGAGTTGGATAGTCCCATGAAGTACTTGGATTTGAAAGAGATGCCTGAGCTGTCTATCAAGCTTGACTCTTCACCTCATTGCAAGTCTCCACTATCACCAAATCATACCAAGTCCAGTTGGGTTTGGGATGATTGTGATTTTCAGGTGATGGAAACACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

225

Amino Acids

24.65

Weight (kDa)

9.3

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	2 cut(s)	435, 466
AcsI	RAATTY	1 cut(s)	61
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	29, 550
AluBI	AGCT	5 cut(s)	104, 478, 497, 565, 577
AluI	AGCT	5 cut(s)	104, 478, 497, 565, 577
Alw26I	GTCTC	2 cut(s)	489, 606
AlwI	GGATC	2 cut(s)	435, 466
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	579, 603, 673
BauI	CACGAG	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	2 cut(s)	393, 658
BcoDI	GTCTC	2 cut(s)	489, 606
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	2 cut(s)	339, 495
BlsI	GCNGC	2 cut(s)	340, 496
BmcAI	AGTACT	1 cut(s)	539
BmsI	GCATC	4 cut(s)	14, 205, 405, 546
Bpu10I	CCTNAGC	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	165, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	630
Bse3DI	GCAATG	2 cut(s)	207, 592
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	165, 246
BseGI	GGATG	2 cut(s)	467, 649
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	2 cut(s)	207, 592
BseMII	CTCAG	3 cut(s)	55, 515, 552
BseNI	ACTGG	1 cut(s)	630
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	506
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	2 cut(s)	278, 513
BshFI	GGCC	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	489, 606
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	31, 427, 458
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	3 cut(s)	54, 514, 553
BspPI	GGATC	2 cut(s)	435, 466
BsrDI	GCAATG	2 cut(s)	207, 592
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	2 cut(s)	165, 246
BssMI	GATC	3 cut(s)	31, 427, 458
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	304, 393
Bst6I	CTCTTC	1 cut(s)	589
BstC8I	GCNNGC	2 cut(s)	183, 220
BstDEI	CTNAG	4 cut(s)	41, 501, 561, 675
BstF5I	GGATG	2 cut(s)	467, 649
BstKTI	GATC	3 cut(s)	34, 430, 461
BstMAI	GTCTC	2 cut(s)	489, 606
BstMBI	GATC	3 cut(s)	31, 427, 458
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	467, 649
BtsIMutI	CAGTG	2 cut(s)	49, 398
Cac8I	GCNNGC	2 cut(s)	183, 220
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	4 cut(s)	380, 424, 489, 532
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	4 cut(s)	41, 501, 561, 675
DpnI	GATC	3 cut(s)	33, 429, 460
DpnII	GATC	3 cut(s)	31, 427, 458
DraIII	CACNNNGTG	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	383, 427, 492, 535
FaiI	YATR	8 cut(s)	321, 381, 407, 425, 446, 490, 533, 621
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	4 cut(s)	379, 423, 488, 531
Fnu4HI	GCNGC	2 cut(s)	339, 495
FokI	GGATG	2 cut(s)	454, 656
Fsp4HI	GCNGC	2 cut(s)	339, 495
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	339, 495
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	383, 427, 492, 535
HindIII	AAGCTT	2 cut(s)	476, 575
HinfI	GANTC	4 cut(s)	37, 262, 464, 581
HphI	GGTGA	3 cut(s)	579, 603, 673
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	6 cut(s)	36, 202, 250, 276, 289, 463
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	111, 271, 362
HpyCH4III	ACNGT	2 cut(s)	304, 393
HpyCH4V	TGCA	8 cut(s)	86, 218, 259, 319, 379, 396, 494, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	4 cut(s)	41, 501, 561, 675
Hsp92II	CATG	4 cut(s)	383, 427, 492, 535
Kzo9I	GATC	3 cut(s)	31, 427, 458
LpnPI	CCDG	8 cut(s)	90, 168, 195, 327, 389, 573, 643, 644
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	4 cut(s)	14, 205, 405, 546
MaeI	CTAG	1 cut(s)	128
MalI	GATC	3 cut(s)	33, 429, 460
MboI	GATC	3 cut(s)	31, 427, 458
MboII	GAAGA	2 cut(s)	109, 576
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	2 cut(s)	12, 61
MlyI	GAGTC	2 cut(s)	256, 575
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	5 cut(s)	135, 256, 355, 358, 600
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	3 cut(s)	31, 427, 458
NlaIII	CATG	4 cut(s)	383, 427, 492, 535
PceI	AGGCCT	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	37, 464
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	340, 496
PleI	GAGTC	2 cut(s)	256, 575
PpsI	GAGTC	2 cut(s)	256, 575
PspFI	CCCAGC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	2 cut(s)	339, 495
Sau3AI	GATC	3 cut(s)	31, 427, 458
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	2 cut(s)	256, 575
SfaNI	GCATC	4 cut(s)	14, 205, 405, 546
SfcI	CTRYAG	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	12, 61
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	304, 393
TaqI	TCGA	2 cut(s)	140, 173
TasI	AATT	2 cut(s)	12, 61
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	37, 464
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	2 cut(s)	49, 398
TseI	GCWGC	1 cut(s)	494
TspDTI	ATGAA	2 cut(s)	456, 548
TspRI	CASTG	2 cut(s)	49, 398
Van91I	CCANNNNNTGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XspI	CTAG	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.