Rh3BG285600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001257
Physical Location & Seq
Reverse (-)
28405819 .. 28408713
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG285600.1

Sequence Viewer

Length: 810 bp
ATGATGGAGAGATTGAGAAAACGAAGGAGGAGAGAGAGAGAAACCAAAACCAAGAAAACTGAGAAAATTCAAGAGCGCACATTCCTCGCCTACTTCGATTCTAATCTGATAAATTGGCTAAACAAAGCACAAATGGCATCAACAATTGGTCGATTGTTTCAAGATCAGAACCTCAGTGTTCACTCTAATGGAGATTCTGCTGTTGGAAAGGGTGGTGCAAAACAACAGAAGAAAGCAGGGTTTGGTGGAAGGAAACCTCTAGGAGATGTATCGAATACAGGGAAGCCTGATTTTACCAAGGTGTCGAAAAAGCCTGCTCTTACCAATGTTTCTGAAATCATTGCTGATGCAAGCAATAAGAAAGGCCTTTGTAAAGCCTCGGATAAAGTGCAGACTCGTGGCAGCCGCAAGGCACTATCTGATGTCTCTAACACAGTCAAACCACCTGTGCACAAGAAGTCAAGTGTTGTGGCACAACCACCTTGTGGTTTTGAGGAAGAAGGATTCTTGCATGACCATCAACAGTGCATCAAATATATGAGAAAGGCTAACCAAATGGATCAACTGGATTTTTTTATGATAATACAAGGATCAGATTCATCCAAGAAGCTTCTATCTCCGTGTGCAGTTTCTCAGTTTCGTAAAGTTGAGCCGGAGAGTTCCATGAGGTACTTGGATTTGAAAGAGATGCCTGAGCTGTCTATCAAGCTTGACTCTTCACCTCATTGCAAGTCTCCATTGTCACCAACTCATACCAAGTCCACTTGGATTTGGGATGATTGTGATTTTCAGGTGATGGTGACACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.28

Weight (kDa)

9.66

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 485
AciI CCGC 1 cut(s) 406
AclWI GGATC 2 cut(s) 567, 598
AcsI RAATTY 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 671
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 3 cut(s) 71, 161, 682
AluBI AGCT 3 cut(s) 610, 697, 709
AluI AGCT 3 cut(s) 610, 697, 709
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 2 cut(s) 430, 738
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 2 cut(s) 567, 598
AoxI GGCC 1 cut(s) 364
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 1 cut(s) 402
ApoI RAATTY 1 cut(s) 66
AspLEI GCGC 1 cut(s) 78
AsuHPI GGTGA 3 cut(s) 711, 735, 805
BaeGI GKGCMC 1 cut(s) 453
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 414
BccI CCATC 2 cut(s) 525, 790
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BcoDI GTCTC 2 cut(s) 430, 738
BfaI CTAG 1 cut(s) 260
BisI GCNGC 2 cut(s) 403, 406
BlsI GCNGC 2 cut(s) 404, 407
BmsI GCATC 4 cut(s) 146, 337, 537, 678
Bpu10I CCTNAGC 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 297, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 1 cut(s) 570
Bse3DI GCAATG 2 cut(s) 339, 724
Bse8I GATNNNNATC 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 297, 378
BseGI GGATG 2 cut(s) 599, 781
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 2 cut(s) 339, 724
BseMII CTCAG 4 cut(s) 51, 187, 647, 684
BseNI ACTGG 1 cut(s) 570
BseRI GAGGAG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 1 cut(s) 414
BsgI GTGCAG 2 cut(s) 410, 645
BshFI GGCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 1 cut(s) 653
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 2 cut(s) 430, 738
BsnI GGCC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 3 cut(s) 163, 559, 590
BspACI CCGC 1 cut(s) 406
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 4 cut(s) 52, 186, 646, 685
BspPI GGATC 2 cut(s) 567, 598
BsrDI GCAATG 2 cut(s) 339, 724
BsrI ACTGG 1 cut(s) 570
BssECI CCNNGG 2 cut(s) 297, 378
BssMI GATC 3 cut(s) 163, 559, 590
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 436, 525
Bst6I CTCTTC 1 cut(s) 721
BstC8I GCNNGC 2 cut(s) 315, 352
BstDEI CTNAG 5 cut(s) 60, 173, 633, 693, 807
BstF5I GGATG 2 cut(s) 599, 781
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 3 cut(s) 166, 562, 593
BstMAI GTCTC 2 cut(s) 430, 738
BstMBI GATC 3 cut(s) 163, 559, 590
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 414
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 2 cut(s) 599, 781
BtsIMutI CAGTG 2 cut(s) 181, 530
Cac8I GCNNGC 2 cut(s) 315, 352
CfoI GCGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 670
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 2 cut(s) 512, 664
CviQI GTAC 1 cut(s) 670
DdeI CTNAG 5 cut(s) 60, 173, 633, 693, 807
DpnI GATC 3 cut(s) 165, 561, 592
DpnII GATC 3 cut(s) 163, 559, 590
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 1 cut(s) 721
EarI CTCTTC 1 cut(s) 721
Eco130I CCWWGG 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 515, 667
FaiI YATR 6 cut(s) 513, 537, 539, 578, 665, 753
FatI CATG 2 cut(s) 511, 663
Fnu4HI GCNGC 2 cut(s) 403, 406
FokI GGATG 2 cut(s) 586, 788
Fsp4HI GCNGC 2 cut(s) 403, 406
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 77
GluI GCNGC 2 cut(s) 403, 406
HaeIII GGCC 1 cut(s) 366
HapII CCGG 1 cut(s) 653
HhaI GCGC 1 cut(s) 78
Hin1II CATG 2 cut(s) 515, 667
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HindIII AAGCTT 2 cut(s) 608, 707
HinfI GANTC 6 cut(s) 98, 194, 394, 504, 596, 713
HpaII CCGG 1 cut(s) 653
HphI GGTGA 3 cut(s) 711, 735, 805
Hpy166II GTNNAC 3 cut(s) 181, 451, 762
Hpy188I TCNGA 6 cut(s) 108, 168, 334, 382, 421, 595
Hpy188III TCNNGA 2 cut(s) 71, 161
Hpy8I GTNNAC 3 cut(s) 181, 451, 762
HpyAV CCTTC 3 cut(s) 18, 243, 494
HpyCH4III ACNGT 2 cut(s) 436, 525
HpyCH4V TGCA 8 cut(s) 218, 350, 391, 451, 511, 528, 626, 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 5 cut(s) 60, 173, 633, 693, 807
Hsp92II CATG 2 cut(s) 515, 667
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 3 cut(s) 163, 559, 590
LpnPI CCDG 9 cut(s) 222, 264, 300, 327, 459, 551, 666, 705, 776
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 4 cut(s) 146, 337, 537, 678
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 2 cut(s) 741, 799
MalI GATC 3 cut(s) 165, 561, 592
MboI GATC 3 cut(s) 163, 559, 590
MboII GAAGA 3 cut(s) 241, 509, 708
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 3 cut(s) 66, 112, 144
MlyI GAGTC 2 cut(s) 388, 707
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 8 cut(s) 21, 95, 182, 267, 388, 487, 660, 732
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 653
MunI CAATTG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 3 cut(s) 163, 559, 590
NlaIII CATG 2 cut(s) 515, 667
NmuCI GTSAC 2 cut(s) 741, 799
PceI AGGCCT 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 4 cut(s) 98, 194, 504, 596
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 2 cut(s) 404, 407
PleI GAGTC 2 cut(s) 388, 707
PpsI GAGTC 2 cut(s) 388, 707
RsaI GTAC 1 cut(s) 671
RsaNI GTAC 1 cut(s) 670
RseI CAYNNNNRTG 1 cut(s) 186
SatI GCNGC 2 cut(s) 403, 406
Sau3AI GATC 3 cut(s) 163, 559, 590
SchI GAGTC 2 cut(s) 388, 707
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 4 cut(s) 146, 337, 537, 678
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 3 cut(s) 66, 112, 144
SseBI AGGCCT 1 cut(s) 366
SsiI CCGC 1 cut(s) 406
SspMI CTAG 1 cut(s) 260
StuI AGGCCT 1 cut(s) 366
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 436, 525
TaqI TCGA 4 cut(s) 96, 151, 272, 305
TasI AATT 3 cut(s) 66, 112, 144
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 4 cut(s) 98, 194, 504, 596
TscAI CASTG 2 cut(s) 181, 530
TseFI GTSAC 2 cut(s) 741, 799
TseI GCWGC 1 cut(s) 402
Tsp45I GTSAC 2 cut(s) 741, 799
TspDTI ATGAA 1 cut(s) 588
TspGWI ACGGA 1 cut(s) 609
TspRI CASTG 2 cut(s) 181, 530
Van91I CCANNNNNTGG 1 cut(s) 485
VneI GTGCAC 1 cut(s) 449
XapI RAATTY 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.