Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001257

Physical Location & Seq

Genomic Coordinates Forward (+)

21314700 .. 21317020

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGTCAAAAGTAGTTCGTTTGATTCAGGATCAGAACCTCAATGTTCACTCTGATGGAGCTTCAGTTGCAGGAAAGGGTGATGCATTCAAATCAACCAAGAAAGGGGGACTTGGTGTAAGGAAACCTCTAGGAGATCTATCAAATAGGGGAAAGCCTGATTTTACCAAGGCATCAAAAAAGCCTGCTCTCACCAATGTTCCTGAAATCATTGCTGATGCAAGCAATAAGAAAGGCCTTTCTAAAGCCTTGGATAAAGTGCAGACTCGCAAGGCACTATCTGATGTGTCTAACACAGTGAAACCACCCCTTCAGAAGACTTCAAGTGCTGTGGCTGAGGAATCCTCTTGTGATTTTGAGAAGGAAGGTTTCCTGCACGACCATAAACAGTGCATCAAAGCAATGAGAGAGGCTACCCACATGGATCAAATGGATATATTTAGGATGATACATGGACCAAATCCATTCAAGATTCTTTCATCTCCACCAAAAGCTTCTCAGTTTACCAAAGTTGAGGAAAATTTGCAGGAGGAGACCATGTACTTGGAAGAGATACCTGAGGATCAATCCACCTTGCTGCCTATCAAGCAGGACTCCTCCGTCTCCTCACCTCCTTGCAATTCTCCACCTCTATCACCAGTACGCTTTACCGATTCCCGTTGGATTTGGGAGGAGTGTGAATTTCAGGTGATGGGAACACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

234

Amino Acids

25.78

Weight (kDa)

7.67

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14190 AT3G14190 AT5G12360 AT5G12360
fragaria_vesca	FvH4_2g09870 FvH4_5g32440 FvH4_6g24000 FvH4_6g24000 FvH4_6g24000 FvH4_6g37300 FvH4_6g37300
malus_domestica	MD07G1041300.v1.1 MD12G1079700.v1.1 MD14G1075900.v1.1
prunus_persica	Prupe.7G043900_v2.0.a1 Prupe.7G043900_v2.0.a1 Prupe.7G058200_v2.0.a1
pyrus_communis	pycom07g02870
rosa_chinensis	RchiOBHm_Chr3g0482351 RchiOBHm_Chr3g0482721 RchiOBHm_Chr3g0482771 RchiOBHm_Chr3g0486201
rosa_laevigata	RLG00000023330
rosa_multiflora	Rmu_co8450015.1_g000001 Rmu_sc0006601.1_g000001 Rmu_sc0008293.1_g000003 Rmu_sc0011602.1_g000006 Rmu_sc0019256.1_g000003 Rmu_ssc0000175.1_g000036
rosa_roxburghii	Rroxscaffold_6G00394010 Rroxscaffold_6G00398970 Rroxscaffold_6G00399400
rosa_rugosa	Rorug03G0195900 Rorug03G0195900 Rorug03G0198600 Rorug03G0198700 Rorug03G0199200 Rorug03G0199200
rosa_samantha	Rh3AG247700 Rh3AG249500 Rh3AG249800 Rh3AG274000 Rh3BG282200 Rh3BG285600 Rh3BG285900 Rh3CG279200 Rh3CG279300 Rh3CG283200 Rh3CG283800 Rh3DG275000 Rh3DG279000 Rh3DG279500
rosa_wichuraiana	Rw3G022210 Rw3G022550 Rw3G022580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
AclWI	GGATC	3 cut(s)	39, 432, 570
AcsI	RAATTY	2 cut(s)	520, 680
AcuI	CTGAAG	2 cut(s)	48, 296
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	542, 642
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	91, 324, 469
AluBI	AGCT	2 cut(s)	62, 494
AluI	AGCT	2 cut(s)	62, 494
Alw26I	GTCTC	2 cut(s)	527, 607
AlwI	GGATC	3 cut(s)	39, 432, 570
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	577
ApoI	RAATTY	2 cut(s)	520, 680
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	5 cut(s)	92, 184, 600, 627, 700
AvaII	GGWCC	1 cut(s)	455
AxyI	CCTNAGG	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	2 cut(s)	50, 685
BcoDI	GTCTC	2 cut(s)	527, 607
BfaI	CTAG	1 cut(s)	131
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	578
BlsI	GCNGC	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BmsI	GCATC	4 cut(s)	73, 182, 208, 402
BpiI	GAAGAC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
Bpu10I	CCTNAGC	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	168, 249
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 524, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	638
Bse21I	CCTNAGG	1 cut(s)	558
Bse3DI	GCAATG	2 cut(s)	210, 408
BseDI	CCNNGG	2 cut(s)	168, 249
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	2 cut(s)	210, 408
BseMII	CTCAG	3 cut(s)	327, 512, 549
BseNI	ACTGG	1 cut(s)	638
BseRI	GAGGAG	4 cut(s)	545, 586, 595, 686
BseXI	GCAGC	1 cut(s)	564
BsgI	GTGCAG	2 cut(s)	281, 359
BshFI	GGCC	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	527, 607
BsmBI	CGTCTC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	31, 136, 424, 562
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	3 cut(s)	328, 511, 550
BspPI	GGATC	3 cut(s)	39, 432, 570
BspTNI	GGTCTC	1 cut(s)	527
BsrDI	GCAATG	2 cut(s)	210, 408
BsrI	ACTGG	1 cut(s)	638
BssECI	CCNNGG	2 cut(s)	168, 249
BssMI	GATC	4 cut(s)	31, 136, 424, 562
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	168, 249
Bst4CI	ACNGT	2 cut(s)	298, 390
Bst6I	CTCTTC	1 cut(s)	543
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	186, 223
BstDEI	CTNAG	3 cut(s)	336, 498, 558
BstF5I	GGATG	1 cut(s)	450
BstKTI	GATC	4 cut(s)	34, 139, 427, 565
BstMAI	GTCTC	2 cut(s)	527, 607
BstMBI	GATC	4 cut(s)	31, 136, 424, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 586
BstV1I	GCAGC	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	303, 395
Cac8I	GCNNGC	2 cut(s)	186, 223
Cfr13I	GGNCC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	541, 641
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	3 cut(s)	421, 452, 538
CviJI	RGCY	8 cut(s)	62, 157, 184, 237, 248, 335, 413, 494
CviKI_1	RGCY	8 cut(s)	62, 157, 184, 237, 248, 335, 413, 494
CviQI	GTAC	2 cut(s)	541, 641
DdeI	CTNAG	3 cut(s)	336, 498, 558
DpnI	GATC	4 cut(s)	33, 138, 426, 564
DpnII	GATC	4 cut(s)	31, 136, 424, 562
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco130I	CCWWGG	2 cut(s)	168, 249
Eco147I	AGGCCT	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	48, 296
Eco81I	CCTNAGG	1 cut(s)	558
EcoT14I	CCWWGG	2 cut(s)	168, 249
EcoT22I	ATGCAT	1 cut(s)	88
ErhI	CCWWGG	2 cut(s)	168, 249
Esp3I	CGTCTC	1 cut(s)	607
FaeI	CATG	3 cut(s)	424, 455, 541
FaiI	YATR	6 cut(s)	384, 422, 437, 453, 539, 703
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	3 cut(s)	420, 451, 537
Fnu4HI	GCNGC	1 cut(s)	578
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	578
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	424, 455, 541
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	6 cut(s)	25, 265, 341, 472, 593, 653
HphI	GGTGA	5 cut(s)	92, 184, 600, 627, 700
Hpy166II	GTNNAC	2 cut(s)	49, 504
Hpy188I	TCNGA	4 cut(s)	36, 55, 283, 315
Hpy188III	TCNNGA	3 cut(s)	29, 203, 469
Hpy8I	GTNNAC	2 cut(s)	49, 504
HpyAV	CCTTC	3 cut(s)	320, 355, 359
HpyCH4III	ACNGT	2 cut(s)	298, 390
HpyCH4V	TGCA	8 cut(s)	71, 86, 221, 262, 376, 393, 526, 618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 586
HpyF3I	CTNAG	3 cut(s)	336, 498, 558
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	424, 455, 541
Kzo9I	GATC	4 cut(s)	31, 136, 424, 562
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	564
LweI	GCATC	4 cut(s)	73, 182, 208, 402
MaeI	CTAG	1 cut(s)	131
MalI	GATC	4 cut(s)	33, 138, 426, 564
MboI	GATC	4 cut(s)	31, 136, 424, 562
MboII	GAAGA	2 cut(s)	328, 560
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	3 cut(s)	520, 619, 680
MlyI	GAGTC	2 cut(s)	259, 587
MmeI	TCCRAC	1 cut(s)	641
Mph1103I	ATGCAT	1 cut(s)	88
MslI	CAYNNNNRTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	68, 586
NdeII	GATC	4 cut(s)	31, 136, 424, 562
NlaIII	CATG	3 cut(s)	424, 455, 541
NsiI	ATGCAT	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	237
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	25, 341, 472, 653
PkrI	GCNGC	1 cut(s)	579
PleI	GAGTC	2 cut(s)	259, 587
PpsI	GAGTC	2 cut(s)	259, 587
PspPI	GGNCC	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	2 cut(s)	542, 642
RsaNI	GTAC	2 cut(s)	541, 641
RseI	CAYNNNNRTG	1 cut(s)	54
SatI	GCNGC	1 cut(s)	578
Sau3AI	GATC	4 cut(s)	31, 136, 424, 562
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	2 cut(s)	259, 587
SfaNI	GCATC	4 cut(s)	73, 182, 208, 402
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	520, 619, 680
SseBI	AGGCCT	1 cut(s)	237
SspMI	CTAG	1 cut(s)	131
StuI	AGGCCT	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	168, 249
TaaI	ACNGT	2 cut(s)	298, 390
TasI	AATT	3 cut(s)	520, 619, 680
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	4 cut(s)	25, 341, 472, 653
TscAI	CASTG	2 cut(s)	303, 395
TseI	GCWGC	1 cut(s)	577
TspDTI	ATGAA	1 cut(s)	468
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	2 cut(s)	303, 395
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	2 cut(s)	520, 680
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.