AT3G62730

desiccation-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001867
Physical Location & Seq
Reverse (-)
23207854 .. 23209533
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62730.2

Sequence Viewer

Length: 954 bp
ATGTTTAAACTCTGTCTCGTTCTCGTCTTGGTTATTGCAGTAGATGCAAATCCGGCTAAGTCCGGTTCTTGTAGTTGCTCCGGGAATATATCAGCGAGCGATGTCGATCGAGTTCATTTCGCGATGAACTTGGAGTTCACCGAGGCCGAGTTCTTCTTAAAAGGGGCTACCGGAAAAGGACTTGATGCCTATAACGCGACACTTGCTAAAGGCGGACCACCGCCGATAGGGGCCAAGAAAGCCAACCTTGATCCTATAACTAATCGAATCATCGAGGAGTTTGGTTATCAAGAAATCGGTCATCTTAGGGCGATTACGGATATGACGGGAGGAATTCCACGTCCGCTAATAAATCTGACGAGAGAGAATTTCGCAGTGTTTATGGATAGAGCGGTTGGACGCAAATCTAATCCGCGGTTTGATCCTTACGCCAACTCACTCAACTATCTCTTAGCTTCATATTATATCCCTTATGTTGGCCTTACCGGTTATGTCGGAACCATCCCTTACCTTGTCTACTTCAATATCAAAAAGCTAGTGGCGGGTCTATTGGGGGTGGAATCGGGTCAAGACGCAGTGATAAGAACGCTTCTGTACGAGAGACAGAATGAGAAGGTGGAGGAATACGGTGGAGTCACGGTGGCTGAGCTGACCAATGAGATATCTAACCTCCGTAATGAACTCGGTATGTGCGGGATCAAGGACGAAGGCTTGTGCGTGCCGTTGTGGCTAGGAGCGGAGAATCGCACCACCAGCAACATCCTCTCCGCTGATCCTTACTCTCTCTCTTATGACCGGACAGCACAAGAGATCCTCAGGGTTATGTACGGCACCGGTGATGAGCACCGACCTGGCGGGTTTTGGCCGTGTGGTGCCAATGGAAGGATCGCTAGGATGTTTCTTGATGAAGGGTGTTATGGTGAATATTGCGTTGTATGTTCACATGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

317

Amino Acids

34.73

Weight (kDa)

5.27

Isoelectric Point (pI)

22.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 33 - 177 7.6e-24 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 830, 872
AccBSI CCGCTC 2 cut(s) 392, 737
AccI GTMKAC 1 cut(s) 516
AccII CGCG 3 cut(s) 122, 197, 415
AclWI GGATC 6 cut(s) 245, 416, 704, 767, 805, 893
AcoI YGGCCR 1 cut(s) 863
AcsI RAATTY 2 cut(s) 333, 367
AfaI GTAC 2 cut(s) 596, 827
AfiI CCNNNNNNNGG 3 cut(s) 227, 476, 882
AgeI ACCGGT 2 cut(s) 485, 833
AgsI TTSAA 1 cut(s) 523
AjiI CACGTC 1 cut(s) 341
AjnI CCWGG 1 cut(s) 850
AluBI AGCT 3 cut(s) 455, 535, 649
AluI AGCT 3 cut(s) 455, 535, 649
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 2 cut(s) 20, 595
AlwI GGATC 6 cut(s) 245, 416, 704, 767, 805, 893
AoxI GGCC 4 cut(s) 144, 231, 478, 863
ApoI RAATTY 2 cut(s) 333, 367
AsiGI ACCGGT 2 cut(s) 485, 833
AspS9I GGNCC 2 cut(s) 215, 231
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 3 cut(s) 130, 848, 932
AvaII GGWCC 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 815
BanI GGYRCC 2 cut(s) 830, 872
Bbv12I GWGCWC 1 cut(s) 846
BccI CCATC 1 cut(s) 509
BceAI ACGGC 3 cut(s) 706, 844, 850
BciT130I CCWGG 1 cut(s) 852
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 2 cut(s) 20, 595
BfaI CTAG 3 cut(s) 536, 731, 891
BglI GCCNNNNNGGC 1 cut(s) 727
BlpI GCTNAGC 1 cut(s) 645
Bme1390I CCNGG 2 cut(s) 82, 852
Bme18I GGWCC 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 215, 231
BmiI GGNNCC 4 cut(s) 232, 499, 832, 874
BmrFI CCNGG 2 cut(s) 82, 852
BmsI GCATC 2 cut(s) 34, 175
Bpu1102I GCTNAGC 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 82
BsaBI GATNNNNATC 2 cut(s) 48, 105
BsaJI CCNNGG 2 cut(s) 141, 413
BsaWI WCCGGW 5 cut(s) 62, 170, 485, 795, 833
BsaXI ACNNNNNCTCC 4 cut(s) 624, 654, 749, 779
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 476, 882
Bse118I RCCGGY 2 cut(s) 485, 833
Bse21I CCTNAGG 1 cut(s) 815
Bse8I GATNNNNATC 2 cut(s) 48, 105
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 2 cut(s) 141, 413
BseGI GGATG 3 cut(s) 501, 759, 900
BseJI GATNNNNATC 2 cut(s) 48, 105
BseLI CCNNNNNNNGG 3 cut(s) 227, 476, 882
BseMII CTCAG 2 cut(s) 636, 829
BseRI GAGGAG 1 cut(s) 290
Bsh1236I CGCG 3 cut(s) 122, 197, 415
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 146, 233, 480, 865
BshNI GGYRCC 2 cut(s) 830, 872
BshTI ACCGGT 2 cut(s) 485, 833
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 846
BsiSI CCGG 7 cut(s) 53, 63, 81, 171, 486, 796, 834
BslI CCNNNNNNNGG 3 cut(s) 227, 476, 882
BsmAI GTCTC 2 cut(s) 20, 595
BsnI GGCC 4 cut(s) 146, 233, 480, 865
Bsp1286I GDGCHC 1 cut(s) 846
Bsp143I GATC 7 cut(s) 106, 250, 421, 696, 772, 810, 885
Bsp1720I GCTNAGC 1 cut(s) 645
Bsp68I TCGCGA 1 cut(s) 122
BspANI GGCC 4 cut(s) 146, 233, 480, 865
BspCNI CTCAG 2 cut(s) 637, 828
BspFNI CGCG 3 cut(s) 122, 197, 415
BspLI GGNNCC 4 cut(s) 232, 499, 832, 874
BspPI GGATC 6 cut(s) 245, 416, 704, 767, 805, 893
BspT107I GGYRCC 2 cut(s) 830, 872
BsrBI CCGCTC 2 cut(s) 392, 737
BsrFI RCCGGY 2 cut(s) 485, 833
BssAI RCCGGY 2 cut(s) 485, 833
BssECI CCNNGG 2 cut(s) 141, 413
BssMI GATC 7 cut(s) 106, 250, 421, 696, 772, 810, 885
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 2 cut(s) 629, 640
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 97, 719
BstDEI CTNAG 5 cut(s) 57, 305, 451, 645, 815
BstDSI CCRYGG 1 cut(s) 413
BstF5I GGATG 3 cut(s) 501, 759, 900
BstFNI CGCG 3 cut(s) 122, 197, 415
BstKTI GATC 7 cut(s) 109, 253, 424, 699, 775, 813, 888
BstMAI GTCTC 2 cut(s) 20, 595
BstMBI GATC 7 cut(s) 106, 250, 421, 696, 772, 810, 885
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 7 cut(s) 44, 53, 194, 203, 239, 727, 753
BstNI CCWGG 1 cut(s) 852
BstSCI CCNGG 2 cut(s) 80, 850
BstUI CGCG 3 cut(s) 122, 197, 415
BstX2I RGATCY 1 cut(s) 810
BstYI RGATCY 1 cut(s) 810
Bsu36I CCTNAGG 1 cut(s) 815
BsuRI GGCC 4 cut(s) 146, 233, 480, 865
BtgI CCRYGG 1 cut(s) 413
BtgZI GCGATG 2 cut(s) 114, 137
BtrI CACGTC 1 cut(s) 341
BtsCI GGATG 3 cut(s) 501, 759, 900
BtsI GCAGTG 2 cut(s) 381, 582
BtsIMutI CAGTG 2 cut(s) 381, 582
BtuMI TCGCGA 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 97, 719
Cfr10I RCCGGY 2 cut(s) 485, 833
Cfr13I GGNCC 2 cut(s) 215, 231
Cfr42I CCGCGG 1 cut(s) 416
CseI GACGC 2 cut(s) 408, 581
Csp6I GTAC 2 cut(s) 595, 826
CspAI ACCGGT 2 cut(s) 485, 833
CviAII CATG 1 cut(s) 944
CviQI GTAC 2 cut(s) 595, 826
DdeI CTNAG 5 cut(s) 57, 305, 451, 645, 815
DpnI GATC 7 cut(s) 108, 252, 423, 698, 774, 812, 887
DpnII GATC 7 cut(s) 106, 250, 421, 696, 772, 810, 885
DraI TTTAAA 1 cut(s) 7
EaeI YGGCCR 1 cut(s) 863
EciI GGCGGA 1 cut(s) 228
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 815
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 850
EcoRV GATATC 1 cut(s) 663
FaeI CATG 1 cut(s) 947
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 1 cut(s) 943
FauI CCCGC 3 cut(s) 535, 686, 848
FblI GTMKAC 1 cut(s) 516
FokI GGATG 3 cut(s) 488, 746, 907
FspBI CTAG 3 cut(s) 536, 731, 891
HaeIII GGCC 4 cut(s) 146, 233, 480, 865
HapII CCGG 7 cut(s) 53, 63, 81, 171, 486, 796, 834
HgaI GACGC 2 cut(s) 408, 581
Hin1II CATG 1 cut(s) 947
HinfI GANTC 4 cut(s) 267, 560, 633, 742
HpaII CCGG 7 cut(s) 53, 63, 81, 171, 486, 796, 834
HphI GGTGA 3 cut(s) 130, 848, 932
Hpy166II GTNNAC 3 cut(s) 138, 517, 941
Hpy188I TCNGA 2 cut(s) 357, 497
Hpy188III TCNNGA 4 cut(s) 121, 290, 569, 902
Hpy8I GTNNAC 3 cut(s) 138, 517, 941
HpyAV CCTTC 4 cut(s) 607, 701, 876, 902
HpyCH4III ACNGT 2 cut(s) 629, 640
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 2 cut(s) 38, 47
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 53, 194, 203, 239, 727, 753
HpyF3I CTNAG 5 cut(s) 57, 305, 451, 645, 815
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 1 cut(s) 947
KspI CCGCGG 1 cut(s) 416
Kzo9I GATC 7 cut(s) 106, 250, 421, 696, 772, 810, 885
LmnI GCTCC 2 cut(s) 83, 734
LweI GCATC 2 cut(s) 34, 175
MaeI CTAG 3 cut(s) 536, 731, 891
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 634
MalI GATC 7 cut(s) 108, 252, 423, 698, 774, 812, 887
MbiI CCGCTC 2 cut(s) 392, 737
MboI GATC 7 cut(s) 106, 250, 421, 696, 772, 810, 885
MboII GAAGA 1 cut(s) 145
MflI RGATCY 1 cut(s) 810
MhlI GDGCHC 1 cut(s) 846
MluCI AATT 3 cut(s) 333, 367, 949
MlyI GAGTC 1 cut(s) 642
MmeI TCCRAC 2 cut(s) 376, 475
MnlI CCTC 7 cut(s) 136, 268, 323, 613, 680, 773, 824
MseI TTAA 3 cut(s) 6, 158, 952
MspA1I CMGCKG 2 cut(s) 415, 770
MspI CCGG 7 cut(s) 53, 63, 81, 171, 486, 796, 834
MspR9I CCNGG 2 cut(s) 82, 852
MssI GTTTAAAC 1 cut(s) 7
MvaI CCWGG 1 cut(s) 852
MvnI CGCG 3 cut(s) 122, 197, 415
MwoI GCNNNNNNNGC 7 cut(s) 44, 53, 194, 203, 239, 727, 753
NciI CCSGG 1 cut(s) 82
NdeII GATC 7 cut(s) 106, 250, 421, 696, 772, 810, 885
NlaIII CATG 1 cut(s) 947
NlaIV GGNNCC 4 cut(s) 232, 499, 832, 874
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 634
NruI TCGCGA 1 cut(s) 122
PfeI GAWTC 3 cut(s) 267, 560, 742
PfoI TCCNGGA 1 cut(s) 80
PinAI ACCGGT 2 cut(s) 485, 833
Ple19I CGATCG 1 cut(s) 109
PleI GAGTC 1 cut(s) 641
PmeI GTTTAAAC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 850
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 4 cut(s) 232, 499, 832, 874
PspPI GGNCC 2 cut(s) 215, 231
PsuI RGATCY 1 cut(s) 810
PvuI CGATCG 1 cut(s) 109
RruI TCGCGA 1 cut(s) 122
RsaI GTAC 2 cut(s) 596, 827
RsaNI GTAC 2 cut(s) 595, 826
SacII CCGCGG 1 cut(s) 416
SaqAI TTAA 3 cut(s) 6, 158, 952
Sau3AI GATC 7 cut(s) 106, 250, 421, 696, 772, 810, 885
Sau96I GGNCC 2 cut(s) 215, 231
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 2 cut(s) 82, 852
SduI GDGCHC 1 cut(s) 846
SetI ASST 9 cut(s) 249, 343, 457, 513, 537, 618, 651, 672, 853
SfaNI GCATC 2 cut(s) 34, 175
Sfr303I CCGCGG 1 cut(s) 416
SgrAI CRCCGGYG 1 cut(s) 833
SgrBI CCGCGG 1 cut(s) 416
SinI GGWCC 1 cut(s) 215
Sse9I AATT 3 cut(s) 333, 367, 949
SspI AATATT 1 cut(s) 926
SspMI CTAG 3 cut(s) 536, 731, 891
StyD4I CCNGG 2 cut(s) 80, 850
TaaI ACNGT 2 cut(s) 629, 640
TaiI ACGT 1 cut(s) 343
TaqI TCGA 4 cut(s) 105, 109, 265, 273
TaqII GACCGA 1 cut(s) 287
TasI AATT 3 cut(s) 333, 367, 949
TfiI GAWTC 3 cut(s) 267, 560, 742
Tru1I TTAA 3 cut(s) 6, 158, 952
Tru9I TTAA 3 cut(s) 6, 158, 952
TscAI CASTG 2 cut(s) 381, 582
TseFI GTSAC 1 cut(s) 634
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 5 cut(s) 104, 140, 447, 693, 921
TspGWI ACGGA 2 cut(s) 332, 662
TspRI CASTG 2 cut(s) 381, 582
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 2 cut(s) 333, 367
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 3 cut(s) 536, 731, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.