Rw6G005050

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001867
Physical Location & Seq
Forward (+)
8288916 .. 8290422
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005050.1

Sequence Viewer

Length: 1017 bp
ATGCATGTTTTATTCACTCATCCATCCATTTTAATTTTGTTTGGTTGCATGAAATTAGCAATGGCTCGTTCAATTTCTCATTTCAAGAACACTGCCTCCCTTTTTCTTCTTGCATTGAATCTCAGCCTCACTATTCACCAGGTCCTGGGTGCCACTGATAACAGTACTCTCAAGTACTGCGGACCCATTACAGCCACTGATACTGATCGAGTTCAATTTGCTTTGAACTTGGAGTTCTTGGAGACTGAGTTTTTTCTGTACGGTGCTCTTGGTAAAGGCCTCGACAGCATCAATCCTGCTTATAGCCAAGGCGGTCCTCCTCCTATTGGTGGTCAGAAGGCCCTTCTTGAAGACCCTGTTGTCGCTCGTATCATTGAGGAATTTGCTTATGAAGAAGTTGGCCATATCAGAGCGATTACTAGCACAGTAGGAGGATTTCCAAGGCCTCTCTTAAACATCAGCCGTGCGCAATTTGCAAGAAGTTTCGACGATGTAGTGGGTTACCCCCTCATTCCTCCATTTGAACCCTATGCAAACTCTGTCAATTTTCTGCTAGCAGCCTATATCATCCCGTATGTGGGACTAAATGGCTATGTCAGCACCCTTCCAAGCCTTAACAGCACTATTTCTCGCAGCTTGGTTGCAAAACTCTTGGCAATTGAAAGTGGACAAGATGCAGTGATACGTACGTTACTGTATGAGAGAGCAAACGAGAGGGTGGTTCCGTACAAATTCACGGTGGCTGAATTAACCAACCTTATCTCTGCAAGACGGAACTCCCTCGGTGGGTGTGGCAACAAAGATGAAGGCATCATACTGCCTGACAAGACGCTCGGGGCAGAAAATCAGACAACCAGCAATGTTCTATCCGCTGATGCAAATTCGCTTGCCTACGCTAGAACCCCGCCTGAGATCTTGAGGATTGTCTATGGAAGTTTCAATGAATCTGTGCCTGGCGGGTTTTTCCCTAAAGGTGCTAATGGAGTTATTGCAAAGAGCTACCTTACCAGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

338

Amino Acids

36.61

Weight (kDa)

6.53

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 66 - 234 4.4e-31 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
Acc16I TGCGCA 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 145
AciI CCGC 5 cut(s) 180, 312, 870, 905, 957
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 3 cut(s) 380, 731, 880
AfaI GTAC 5 cut(s) 166, 176, 260, 688, 728
AfiI CCNNNNNNNGG 6 cut(s) 145, 326, 329, 577, 578, 786
AgsI TTSAA 9 cut(s) 72, 85, 118, 215, 226, 350, 524, 662, 940
AjnI CCWGG 4 cut(s) 138, 144, 952, 1007
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 2 cut(s) 636, 999
AluI AGCT 2 cut(s) 636, 999
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 236
AlwNI CAGNNNCTG 2 cut(s) 145, 197
Ama87I CYCGRG 1 cut(s) 833
AoxI GGCC 4 cut(s) 277, 339, 400, 443
ApeKI GCWGC 2 cut(s) 557, 633
ApoI RAATTY 3 cut(s) 380, 731, 880
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 4 cut(s) 142, 182, 314, 340
AsuHPI GGTGA 1 cut(s) 128
AsuNHI GCTAGC 1 cut(s) 553
AvaI CYCGRG 1 cut(s) 833
AvaII GGWCC 3 cut(s) 142, 182, 314
BaeI ACNNNNGTAYC 2 cut(s) 674, 707
BalI TGGCCA 1 cut(s) 402
BanI GGYRCC 1 cut(s) 149
BarI GAAGNNNNNNTAC 2 cut(s) 798, 830
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 569, 645
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 447
BciT130I CCWGG 4 cut(s) 140, 146, 954, 1009
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 3 cut(s) 420, 554, 897
BglII AGATCT 1 cut(s) 912
BisI GCNGC 2 cut(s) 558, 634
BlsI GCNGC 2 cut(s) 559, 635
BmcAI AGTACT 2 cut(s) 166, 176
Bme1390I CCNGG 4 cut(s) 140, 146, 954, 1009
Bme18I GGWCC 3 cut(s) 142, 182, 314
BmeT110I CYCGRG 1 cut(s) 833
BmgT120I GGNCC 4 cut(s) 142, 182, 314, 340
BmiI GGNNCC 3 cut(s) 151, 184, 723
BmrFI CCNGG 4 cut(s) 140, 146, 954, 1009
BmsI GCATC 4 cut(s) 297, 664, 819, 865
BmtI GCTAGC 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 155, 937
BsaAI YACGTR 1 cut(s) 686
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 145, 307, 440, 781
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 233, 263
Bsc4I CCNNNNNNNGG 6 cut(s) 145, 326, 329, 577, 578, 786
Bse3DI GCAATG 2 cut(s) 66, 865
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 4 cut(s) 140, 146, 954, 1009
BseDI CCNNGG 4 cut(s) 145, 307, 440, 781
BseGI GGATG 3 cut(s) 19, 23, 567
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 6 cut(s) 145, 326, 329, 577, 578, 786
BseMI GCAATG 2 cut(s) 66, 865
BseMII CTCAG 3 cut(s) 136, 237, 900
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 569, 645
BshFI GGCC 4 cut(s) 279, 341, 402, 445
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 833
BsiWI CGTACG 1 cut(s) 686
BslFI GGGAC 1 cut(s) 594
BslI CCNNNNNNNGG 6 cut(s) 145, 326, 329, 577, 578, 786
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 594
BsnI GGCC 4 cut(s) 279, 341, 402, 445
BsoBI CYCGRG 1 cut(s) 833
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 3 cut(s) 205, 912, 1011
BspACI CCGC 5 cut(s) 180, 312, 870, 905, 957
BspANI GGCC 4 cut(s) 279, 341, 402, 445
BspCNI CTCAG 3 cut(s) 135, 238, 901
BspLI GGNNCC 3 cut(s) 151, 184, 723
BspOI GCTAGC 1 cut(s) 557
BspT107I GGYRCC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 66, 865
BssECI CCNNGG 4 cut(s) 145, 307, 440, 781
BssMI GATC 3 cut(s) 205, 912, 1011
BssT1I CCWWGG 2 cut(s) 307, 440
Bst2UI CCWGG 4 cut(s) 140, 146, 954, 1009
Bst4CI ACNGT 5 cut(s) 164, 263, 427, 696, 739
BstBAI YACGTR 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 555, 888
BstDEI CTNAG 3 cut(s) 122, 246, 909
BstEII GGTNACC 1 cut(s) 500
BstF5I GGATG 3 cut(s) 19, 23, 567
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 3 cut(s) 208, 915, 1014
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 3 cut(s) 205, 912, 1011
BstMWI GCNNNNNNNGC 4 cut(s) 285, 473, 597, 618
BstNI CCWGG 4 cut(s) 140, 146, 954, 1009
BstNSI RCATGY 1 cut(s) 8
BstPI GGTNACC 1 cut(s) 500
BstSCI CCNGG 4 cut(s) 138, 144, 952, 1007
BstSNI TACGTA 1 cut(s) 686
BstV1I GCAGC 2 cut(s) 569, 645
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 2 cut(s) 912, 1011
BstYI RGATCY 2 cut(s) 912, 1011
BsuRI GGCC 4 cut(s) 279, 341, 402, 445
BtsCI GGATG 3 cut(s) 19, 23, 567
BtsI GCAGTG 2 cut(s) 90, 684
BtsIMutI CAGTG 4 cut(s) 90, 153, 195, 684
Cac8I GCNNGC 2 cut(s) 555, 888
CaiI CAGNNNCTG 2 cut(s) 145, 197
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 4 cut(s) 142, 182, 314, 340
CseI GACGC 1 cut(s) 838
CsiI ACCWGGT 1 cut(s) 138
Csp6I GTAC 5 cut(s) 165, 175, 259, 687, 727
CviAII CATG 2 cut(s) 5, 49
CviQI GTAC 5 cut(s) 165, 175, 259, 687, 727
DdeI CTNAG 3 cut(s) 122, 246, 909
DpnI GATC 3 cut(s) 207, 914, 1013
DpnII GATC 3 cut(s) 205, 912, 1011
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 400
Eco105I TACGTA 1 cut(s) 686
Eco130I CCWWGG 2 cut(s) 307, 440
Eco147I AGGCCT 2 cut(s) 279, 445
Eco47I GGWCC 3 cut(s) 142, 182, 314
Eco88I CYCGRG 1 cut(s) 833
Eco91I GGTNACC 1 cut(s) 500
EcoO109I RGGNCCY 2 cut(s) 142, 340
EcoO65I GGTNACC 1 cut(s) 500
EcoRII CCWGG 4 cut(s) 138, 144, 952, 1007
EcoT14I CCWWGG 2 cut(s) 307, 440
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 307, 440
FaeI CATG 2 cut(s) 8, 52
FaqI GGGAC 1 cut(s) 594
FatI CATG 2 cut(s) 4, 48
FauI CCCGC 2 cut(s) 912, 950
Fnu4HI GCNGC 2 cut(s) 558, 634
FokI GGATG 3 cut(s) 6, 10, 554
Fsp4HI GCNGC 2 cut(s) 558, 634
FspBI CTAG 3 cut(s) 420, 554, 897
FspI TGCGCA 1 cut(s) 468
GlaI GCGC 1 cut(s) 468
GluI GCNGC 2 cut(s) 558, 634
HaeIII GGCC 4 cut(s) 279, 341, 402, 445
HgaI GACGC 1 cut(s) 838
HhaI GCGC 1 cut(s) 469
Hin1II CATG 2 cut(s) 8, 52
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HinfI GANTC 2 cut(s) 118, 944
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 668
Hpy188I TCNGA 3 cut(s) 336, 410, 849
Hpy188III TCNNGA 3 cut(s) 85, 347, 916
Hpy8I GTNNAC 1 cut(s) 668
Hpy99I CGWCG 1 cut(s) 491
HpyAV CCTTC 4 cut(s) 331, 353, 614, 800
HpyCH4III ACNGT 5 cut(s) 164, 263, 427, 696, 739
HpyCH4IV ACGT 2 cut(s) 685, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 473, 597, 618
HpyF3I CTNAG 3 cut(s) 122, 246, 909
HpySE526I ACGT 2 cut(s) 685, 689
Hsp92II CATG 2 cut(s) 8, 52
HspAI GCGC 1 cut(s) 467
Kzo9I GATC 3 cut(s) 205, 912, 1011
Lsp1109I GCAGC 2 cut(s) 569, 645
LweI GCATC 4 cut(s) 297, 664, 819, 865
MabI ACCWGGT 1 cut(s) 138
MaeI CTAG 3 cut(s) 420, 554, 897
MaeII ACGT 2 cut(s) 685, 689
MaeIII GTNAC 2 cut(s) 500, 690
MalI GATC 3 cut(s) 207, 914, 1013
MboI GATC 3 cut(s) 205, 912, 1011
MboII GAAGA 3 cut(s) 98, 362, 404
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 2 cut(s) 912, 1011
MhlI GDGCHC 1 cut(s) 268
MlsI TGGCCA 1 cut(s) 402
MluNI TGGCCA 1 cut(s) 402
Mox20I TGGCCA 1 cut(s) 402
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 402
MseI TTAA 4 cut(s) 32, 452, 615, 749
Msp20I TGGCCA 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 872
MspR9I CCNGG 4 cut(s) 140, 146, 954, 1009
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 4 cut(s) 140, 146, 954, 1009
MwoI GCNNNNNNNGC 4 cut(s) 285, 473, 597, 618
NdeII GATC 3 cut(s) 205, 912, 1011
NheI GCTAGC 1 cut(s) 553
NlaIII CATG 2 cut(s) 8, 52
NlaIV GGNNCC 3 cut(s) 151, 184, 723
NsbI TGCGCA 1 cut(s) 468
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PceI AGGCCT 2 cut(s) 279, 445
PfeI GAWTC 2 cut(s) 118, 944
Pfl23II CGTACG 1 cut(s) 686
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 2 cut(s) 559, 635
Ppu21I YACGTR 1 cut(s) 686
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 4 cut(s) 138, 144, 952, 1007
PspEI GGTNACC 1 cut(s) 500
PspGI CCWGG 4 cut(s) 138, 144, 952, 1007
PspLI CGTACG 1 cut(s) 686
PspN4I GGNNCC 3 cut(s) 151, 184, 723
PspPI GGNCC 4 cut(s) 142, 182, 314, 340
PspPPI RGGWCCY 1 cut(s) 142
PstNI CAGNNNCTG 2 cut(s) 145, 197
PsuI RGATCY 2 cut(s) 912, 1011
RsaI GTAC 5 cut(s) 166, 176, 260, 688, 728
RsaNI GTAC 5 cut(s) 165, 175, 259, 687, 727
SaqAI TTAA 4 cut(s) 32, 452, 615, 749
SatI GCNGC 2 cut(s) 558, 634
Sau3AI GATC 3 cut(s) 205, 912, 1011
Sau96I GGNCC 4 cut(s) 142, 182, 314, 340
ScaI AGTACT 2 cut(s) 166, 176
ScrFI CCNGG 4 cut(s) 140, 146, 954, 1009
SduI GDGCHC 1 cut(s) 268
SetI ASST 8 cut(s) 144, 638, 688, 692, 759, 976, 1001, 1005
SexAI ACCWGGT 1 cut(s) 138
SfaNI GCATC 4 cut(s) 297, 664, 819, 865
SinI GGWCC 3 cut(s) 142, 182, 314
SmlI CTYRAG 2 cut(s) 170, 916
SmoI CTYRAG 2 cut(s) 170, 916
SnaBI TACGTA 1 cut(s) 686
SseBI AGGCCT 2 cut(s) 279, 445
SsiI CCGC 5 cut(s) 180, 312, 870, 905, 957
SspMI CTAG 3 cut(s) 420, 554, 897
StuI AGGCCT 2 cut(s) 279, 445
StyD4I CCNGG 4 cut(s) 138, 144, 952, 1007
StyI CCWWGG 2 cut(s) 307, 440
TaaI ACNGT 5 cut(s) 164, 263, 427, 696, 739
TaiI ACGT 2 cut(s) 688, 692
TaqI TCGA 3 cut(s) 208, 282, 486
TatI WGTACW 2 cut(s) 164, 174
TfiI GAWTC 2 cut(s) 118, 944
Tru1I TTAA 4 cut(s) 32, 452, 615, 749
Tru9I TTAA 4 cut(s) 32, 452, 615, 749
TscAI CASTG 4 cut(s) 97, 160, 202, 684
TseI GCWGC 2 cut(s) 557, 633
TspDTI ATGAA 4 cut(s) 65, 405, 819, 957
TspGWI ACGGA 2 cut(s) 714, 787
TspRI CASTG 4 cut(s) 97, 160, 202, 684
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 3 cut(s) 142, 182, 314
XapI RAATTY 3 cut(s) 380, 731, 880
XceI RCATGY 1 cut(s) 8
XspI CTAG 3 cut(s) 420, 554, 897
ZrmI AGTACT 2 cut(s) 166, 176
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.