MD03G1284600.v1.1

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0001867
Physical Location & Seq
Forward (+)
36466338 .. 36467713
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1284600.v1.1.491

Sequence Viewer

Length: 927 bp
ATGAAATTAGCAGTAATGGCTACTACTTCTGCATCTTATTTCAGTGCTGCCTTTGTTTTCCTTGTTGCTTTGAATTTCCTCAGCTTTCAGGTCATTACTGCTTCTGGTCATGCACCCAACGACAGTGACTACCTAGGGTTTATGTTGAACTTGGAATATTTGGACGGTGAGTTTTACTCATACGGTGTTTTTGGCAATGACCTCGATAGTATCTCCCCAAACTTGTCCCAAGGGGGCCCGCGTCCTATTGGTGGTCAGAAGGCCAATCTCGACCCCCTTGTGACTGAAATAATCAAGGAATTTGCTTATGAACAAGTTGGTCATATCAGAGCAATCACTCAGGCAACAGGCGGGTTCCCAAGGCCTCTTATAAACATCAGCAGAGCCCTTTTCTCACTACTTGTTGACCTAGCAGTGGGTTACCCATTGCTCCCTCCATTTGACCCTTACGCAAACACAGTCAATTATCTTATAGCAGCGCAAGCACTGAATTATGATGGTGTAGTGGGTTATGTTTACATCAATGCAAACCTCAACACCGATGCTGCTAACAGATTGGGTGCATCGCTTTTGGGTACGAAGGCTGGACAAAATGCAGTGGTGCGTGCATTACTGTATGAGAGAGCGAATCAGACGGTGGCTCCGTACAATCTCACGGTGGCTAATATCGTCAGCCGAATTGCTGAATTTGGGAACAAGGTGGCCAAGGGTGGCCTCGAAGAAGGCATCATAGTACCCATCACGCTTGGGGCTGAGAATCGAACGGTCACGAATGTCCTATCAGCGGACACGAATTCGCTGTCCTATGCAAGGACGCCAGGAGAGATCTTGAGGATTCTGTATGGAACAGGAAATGAATGTGTGCCTGGCGGCTTTTTCCCTGCAAGAGCAAATGGCCAAATTGCAAGGACCTGCATTACTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

309

Amino Acids

32.89

Weight (kDa)

5.25

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 40 - 207 4.7e-26 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 920
AccII CGCG 1 cut(s) 241
AciI CCGC 4 cut(s) 239, 351, 785, 870
AcoI YGGCCR 2 cut(s) 702, 895
AcsI RAATTY 4 cut(s) 73, 299, 686, 793
AcyI GRCGYC 1 cut(s) 815
AfaI GTAC 3 cut(s) 577, 647, 735
AfiI CCNNNNNNNGG 4 cut(s) 251, 415, 784, 810
AgsI TTSAA 2 cut(s) 73, 148
AjnI CCWGG 2 cut(s) 817, 865
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
AoxI GGCC 6 cut(s) 235, 261, 362, 702, 712, 895
ApaI GGGCCC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 47, 476, 545
ApoI RAATTY 4 cut(s) 73, 299, 686, 793
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
AspA2I CCTAGG 1 cut(s) 133
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 3 cut(s) 235, 236, 909
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 909
AvrII CCTAGG 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 239
BalI TGGCCA 2 cut(s) 704, 897
BanII GRGCYC 2 cut(s) 239, 388
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 3 cut(s) 34, 488, 532
BccI CCATC 2 cut(s) 491, 746
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciT130I CCWGG 2 cut(s) 819, 867
BfaI CTAG 2 cut(s) 134, 410
BfuAI ACCTGC 1 cut(s) 920
BglII AGATCT 1 cut(s) 825
BisI GCNGC 4 cut(s) 48, 477, 546, 871
BlnI CCTAGG 1 cut(s) 133
BlsI GCNGC 4 cut(s) 49, 478, 547, 872
Bme1390I CCNGG 2 cut(s) 819, 867
Bme18I GGWCC 1 cut(s) 909
BmgT120I GGNCC 3 cut(s) 235, 236, 909
BmiI GGNNCC 4 cut(s) 236, 237, 356, 642
BmrFI CCNGG 2 cut(s) 819, 867
BmsI GCATC 4 cut(s) 41, 532, 572, 735
BplI GAGNNNNNCTC 2 cut(s) 161, 193
Bpu10I CCTNAGC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 850
BsaHI GRCGYC 1 cut(s) 815
BsaJI CCNNGG 4 cut(s) 133, 229, 359, 705
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 415, 784, 810
Bse3DI GCAATG 2 cut(s) 202, 425
BseBI CCWGG 2 cut(s) 819, 867
BseDI CCNNGG 4 cut(s) 133, 229, 359, 705
BseLI CCNNNNNNNGG 4 cut(s) 251, 415, 784, 810
BseMI GCAATG 2 cut(s) 202, 425
BseMII CTCAG 3 cut(s) 94, 353, 744
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 3 cut(s) 34, 488, 532
Bsh1236I CGCG 1 cut(s) 241
BshFI GGCC 6 cut(s) 237, 263, 364, 704, 714, 897
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 4 cut(s) 251, 415, 784, 810
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 6 cut(s) 237, 263, 364, 704, 714, 897
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 239, 388
Bsp143I GATC 1 cut(s) 825
BspACI CCGC 4 cut(s) 239, 351, 785, 870
BspANI GGCC 6 cut(s) 237, 263, 364, 704, 714, 897
BspCNI CTCAG 3 cut(s) 93, 352, 745
BspFNI CGCG 1 cut(s) 241
BspLI GGNNCC 4 cut(s) 236, 237, 356, 642
BspMI ACCTGC 1 cut(s) 920
BsrDI GCAATG 2 cut(s) 202, 425
BssECI CCNNGG 4 cut(s) 133, 229, 359, 705
BssMI GATC 1 cut(s) 825
BssNI GRCGYC 1 cut(s) 815
BssT1I CCWWGG 4 cut(s) 133, 229, 359, 705
Bst2UI CCWGG 2 cut(s) 819, 867
Bst4CI ACNGT 8 cut(s) 125, 167, 185, 460, 615, 637, 658, 766
BstACI GRCGYC 1 cut(s) 815
BstC8I GCNNGC 3 cut(s) 239, 483, 606
BstDEI CTNAG 3 cut(s) 80, 339, 753
BstEII GGTNACC 1 cut(s) 419
BstENI CCTNNNNNAGG 1 cut(s) 808
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 1 cut(s) 828
BstMBI GATC 1 cut(s) 825
BstMWI GCNNNNNNNGC 2 cut(s) 17, 482
BstNI CCWGG 2 cut(s) 819, 867
BstPI GGTNACC 1 cut(s) 419
BstSCI CCNGG 2 cut(s) 817, 865
BstSLI GKGCMC 1 cut(s) 239
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 3 cut(s) 34, 488, 532
BstX2I RGATCY 1 cut(s) 825
BstYI RGATCY 1 cut(s) 825
BsuRI GGCC 6 cut(s) 237, 263, 364, 704, 714, 897
BtgZI GCGATG 1 cut(s) 549
BtsI GCAGTG 2 cut(s) 420, 603
BtsIMutI CAGTG 5 cut(s) 49, 130, 420, 485, 603
BveI ACCTGC 1 cut(s) 920
Cac8I GCNNGC 3 cut(s) 239, 483, 606
CfoI GCGC 1 cut(s) 481
Cfr13I GGNCC 3 cut(s) 235, 236, 909
CseI GACGC 2 cut(s) 230, 823
Csp6I GTAC 3 cut(s) 576, 646, 734
CviAII CATG 1 cut(s) 110
CviQI GTAC 3 cut(s) 576, 646, 734
DdeI CTNAG 3 cut(s) 80, 339, 753
DpnI GATC 1 cut(s) 827
DpnII GATC 1 cut(s) 825
EaeI YGGCCR 2 cut(s) 702, 895
Eco130I CCWWGG 4 cut(s) 133, 229, 359, 705
Eco147I AGGCCT 1 cut(s) 364
Eco24I GRGCYC 2 cut(s) 239, 388
Eco47I GGWCC 1 cut(s) 909
Eco91I GGTNACC 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 808
EcoO109I RGGNCCY 2 cut(s) 235, 909
EcoO65I GGTNACC 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 817, 865
EcoT14I CCWWGG 4 cut(s) 133, 229, 359, 705
EcoT38I GRGCYC 2 cut(s) 239, 388
ErhI CCWWGG 4 cut(s) 133, 229, 359, 705
FaeI CATG 1 cut(s) 113
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 109
FauI CCCGC 2 cut(s) 246, 344
Fnu4HI GCNGC 4 cut(s) 48, 477, 546, 871
FriOI GRGCYC 2 cut(s) 239, 388
Fsp4HI GCNGC 4 cut(s) 48, 477, 546, 871
FspBI CTAG 2 cut(s) 134, 410
GlaI GCGC 1 cut(s) 480
GluI GCNGC 4 cut(s) 48, 477, 546, 871
HaeIII GGCC 6 cut(s) 237, 263, 364, 704, 714, 897
HgaI GACGC 2 cut(s) 230, 823
HhaI GCGC 1 cut(s) 481
Hin1I GRCGYC 1 cut(s) 815
Hin1II CATG 1 cut(s) 113
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 3 cut(s) 628, 757, 835
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 406, 517
Hpy188I TCNGA 3 cut(s) 258, 329, 633
Hpy188III TCNNGA 3 cut(s) 269, 769, 829
Hpy8I GTNNAC 2 cut(s) 406, 517
HpyAV CCTTC 3 cut(s) 253, 574, 716
HpyCH4III ACNGT 8 cut(s) 125, 167, 185, 460, 615, 637, 658, 766
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 482
HpyF3I CTNAG 3 cut(s) 80, 339, 753
Hsp92I GRCGYC 1 cut(s) 815
Hsp92II CATG 1 cut(s) 113
HspAI GCGC 1 cut(s) 479
Kzo9I GATC 1 cut(s) 825
LmnI GCTCC 2 cut(s) 435, 646
Lsp1109I GCAGC 3 cut(s) 34, 488, 532
LweI GCATC 4 cut(s) 41, 532, 572, 735
MaeI CTAG 2 cut(s) 134, 410
MaeIII GTNAC 4 cut(s) 125, 280, 419, 766
MalI GATC 1 cut(s) 827
MboI GATC 1 cut(s) 825
MboII GAAGA 1 cut(s) 731
MflI RGATCY 1 cut(s) 825
MhlI GDGCHC 2 cut(s) 239, 388
MlsI TGGCCA 2 cut(s) 704, 897
MluCI AATT 9 cut(s) 5, 73, 299, 463, 490, 678, 686, 793, 900
MluNI TGGCCA 2 cut(s) 704, 897
MnlI CCTC 7 cut(s) 89, 212, 375, 444, 542, 725, 825
Mox20I TGGCCA 2 cut(s) 704, 897
MscI TGGCCA 2 cut(s) 704, 897
Msp20I TGGCCA 2 cut(s) 704, 897
MspA1I CMGCKG 1 cut(s) 785
MspR9I CCNGG 2 cut(s) 819, 867
MvaI CCWGG 2 cut(s) 819, 867
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 17, 482
NdeII GATC 1 cut(s) 825
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 4 cut(s) 236, 237, 356, 642
NmuCI GTSAC 3 cut(s) 125, 280, 766
PceI AGGCCT 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 641
PfeI GAWTC 3 cut(s) 628, 757, 835
PkrI GCNGC 4 cut(s) 49, 478, 547, 872
PpuMI RGGWCCY 1 cut(s) 909
PsiI TTATAA 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 817, 865
PspEI GGTNACC 1 cut(s) 419
PspGI CCWGG 2 cut(s) 817, 865
PspN4I GGNNCC 4 cut(s) 236, 237, 356, 642
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 3 cut(s) 235, 236, 909
PspPPI RGGWCCY 1 cut(s) 909
PsuI RGATCY 1 cut(s) 825
RsaI GTAC 3 cut(s) 577, 647, 735
RsaNI GTAC 3 cut(s) 576, 646, 734
SatI GCNGC 4 cut(s) 48, 477, 546, 871
Sau3AI GATC 1 cut(s) 825
Sau96I GGNCC 3 cut(s) 235, 236, 909
ScrFI CCNGG 2 cut(s) 819, 867
SduI GDGCHC 2 cut(s) 239, 388
SetI ASST 8 cut(s) 86, 93, 135, 204, 411, 534, 702, 914
SfaNI GCATC 4 cut(s) 41, 532, 572, 735
SinI GGWCC 1 cut(s) 909
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
Sse9I AATT 9 cut(s) 5, 73, 299, 463, 490, 678, 686, 793, 900
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 4 cut(s) 239, 351, 785, 870
SspI AATATT 1 cut(s) 158
SspMI CTAG 2 cut(s) 134, 410
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 2 cut(s) 817, 865
StyI CCWWGG 4 cut(s) 133, 229, 359, 705
TaaI ACNGT 8 cut(s) 125, 167, 185, 460, 615, 637, 658, 766
TaqI TCGA 4 cut(s) 204, 270, 717, 760
TasI AATT 9 cut(s) 5, 73, 299, 463, 490, 678, 686, 793, 900
TauI GCSGC 1 cut(s) 873
TfiI GAWTC 3 cut(s) 628, 757, 835
TscAI CASTG 5 cut(s) 49, 130, 420, 492, 603
TseFI GTSAC 3 cut(s) 125, 280, 766
TseI GCWGC 3 cut(s) 47, 476, 545
Tsp45I GTSAC 3 cut(s) 125, 280, 766
TspDTI ATGAA 3 cut(s) 17, 324, 870
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 5 cut(s) 49, 130, 420, 492, 603
VpaK11BI GGWCC 1 cut(s) 909
XagI CCTNNNNNAGG 1 cut(s) 808
XapI RAATTY 4 cut(s) 73, 299, 686, 793
XmaJI CCTAGG 1 cut(s) 133
XspI CTAG 2 cut(s) 134, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.