MD11G1014700.v1.1

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001867
Physical Location & Seq
Reverse (-)
1164383 .. 1167199
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1014700.v1.1.491

Sequence Viewer

Length: 930 bp
ATGAAATTAGAAATGGCAACAGCTGGTTCAATATCTTATTATTTCAGCTCTGCATTTCTTTTTGTTCTTGCATTCAATCTTCTCAGCTTTCAGGCCATGACTGCTTCAGGTCAGGAAGCCAATGACGGCGATATGGTTCAATTTGCCTTGAACTTGGAATTCATGGAGGCGGAGTTTTTTCTGTCGGGTGCTTTGGGCAAAGGGCTCGACTCAATCAGTCCAAGCCTCACCCAAGGAGGTCCGGCTCCCATTGGGGCACAGAAGGCCAATCTCGACTCTCTTGTCGGCCCTATCATCGAGGAATTCGGTTATCAAGAAGTTGGTCATATCAGGGCAATTGTTACACGAGTAGGAGGATTTCCAAGGCCACTTTTAAATCTCAGCCGTCAGAATTTTGCAAAAGTATTTGACCTAGCAGTGGGCTTCAACCTGGTCCCTCCATTCGATCCCTATGCAAACTCCGTCAATTTTCTGTTGGCAGCCTACTTGATTCCTTATGTGGGTATGGGAGGTTACGTTGGCGTCATCCCAAACCTCACCGCTCCTGCTACTCTAGATTTGGCTGCATCACTTTTGGGTGTTGAGGCTGGGCAAGATGCCGTGGTACGTGCGCTACTGTATGAGAGAAGGAATCAGAAGGTGTTTCCTTACATCCTCACCGTGGCTGATTTCACCAACCGAATTTCTGCACATAGGAATCGGCTGGGCGGGAGTGGCAACAAAGATGAAGGGCTCATAGTACCCACCACCCTTGGGGCGGAGAATCGGACGTCTAGTAACGTCCTATCGGCCGATCCTAACTCTCTTTCGTATGCAAGGACACCAGCTGAGATTTTGGGGATTGTGTATGGAACTGGAAATGCATCAATGCCTGGCGGGTTTTTCCCTCTAGGAGCAAATGGCAATATTGCGACCACCGTGCGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

310

Amino Acids

32.74

Weight (kDa)

5.11

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 42 - 208 2.8e-34 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AatII GACGTC 1 cut(s) 773
AccBSI CCGCTC 1 cut(s) 542
AciI CCGC 5 cut(s) 170, 540, 708, 758, 876
AclWI GGATC 2 cut(s) 440, 788
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 4 cut(s) 158, 302, 391, 681
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 2 cut(s) 522, 770
AfaI GTAC 2 cut(s) 606, 741
AfiI CCNNNNNNNGG 5 cut(s) 418, 500, 661, 753, 757
AgsI TTSAA 5 cut(s) 30, 76, 140, 151, 427
AjnI CCWGG 2 cut(s) 429, 871
AluBI AGCT 4 cut(s) 23, 48, 87, 827
AluI AGCT 4 cut(s) 23, 48, 87, 827
AlwI GGATC 2 cut(s) 440, 788
AoxI GGCC 5 cut(s) 93, 264, 286, 365, 789
ApeKI GCWGC 2 cut(s) 479, 563
ApoI RAATTY 4 cut(s) 158, 302, 391, 681
AspLEI GCGC 1 cut(s) 613
AspS9I GGNCC 3 cut(s) 239, 287, 433
AsuHPI GGTGA 4 cut(s) 220, 529, 649, 664
AvaII GGWCC 2 cut(s) 239, 433
BaeGI GKGCMC 1 cut(s) 259
BanII GRGCYC 2 cut(s) 207, 735
BauI CACGAG 1 cut(s) 345
BbvI GCAGC 2 cut(s) 491, 550
BceAI ACGGC 3 cut(s) 142, 369, 584
BcgI CGANNNNNNTGC 5 cut(s) 187, 221, 434, 468, 901
BciT130I CCWGG 2 cut(s) 431, 873
BfaI CTAG 4 cut(s) 413, 554, 774, 890
BisI GCNGC 2 cut(s) 480, 564
BlsI GCNGC 2 cut(s) 481, 565
Bme1390I CCNGG 2 cut(s) 431, 873
Bme18I GGWCC 2 cut(s) 239, 433
BmgT120I GGNCC 3 cut(s) 239, 287, 433
BmiI GGNNCC 2 cut(s) 246, 435
BmrFI CCNGG 2 cut(s) 431, 873
BmsI GCATC 3 cut(s) 575, 586, 872
BsaAI YACGTR 1 cut(s) 608
BsaHI GRCGYC 2 cut(s) 522, 770
BsaJI CCNNGG 5 cut(s) 232, 362, 600, 660, 751
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 501, 531
Bsc4I CCNNNNNNNGG 5 cut(s) 418, 500, 661, 753, 757
Bse1I ACTGG 1 cut(s) 859
BseBI CCWGG 2 cut(s) 431, 873
BseDI CCNNGG 5 cut(s) 232, 362, 600, 660, 751
BseGI GGATG 2 cut(s) 525, 651
BseLI CCNNNNNNNGG 5 cut(s) 418, 500, 661, 753, 757
BseMII CTCAG 3 cut(s) 97, 394, 819
BseNI ACTGG 1 cut(s) 859
BseSI GKGCMC 1 cut(s) 259
BseX3I CGGCCG 1 cut(s) 789
BseXI GCAGC 2 cut(s) 491, 550
BseYI CCCAGC 2 cut(s) 587, 703
BsgI GTGCAG 1 cut(s) 672
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 5 cut(s) 95, 266, 288, 367, 791
BsiEI CGRYCG 1 cut(s) 792
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 5 cut(s) 418, 500, 661, 753, 757
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 5 cut(s) 95, 266, 288, 367, 791
Bsp1286I GDGCHC 3 cut(s) 207, 259, 735
Bsp143I GATC 2 cut(s) 445, 793
BspACI CCGC 5 cut(s) 170, 540, 708, 758, 876
BspANI GGCC 5 cut(s) 95, 266, 288, 367, 791
BspCNI CTCAG 3 cut(s) 96, 393, 820
BspLI GGNNCC 2 cut(s) 246, 435
BspPI GGATC 2 cut(s) 440, 788
BsrBI CCGCTC 1 cut(s) 542
BsrI ACTGG 1 cut(s) 859
BssECI CCNNGG 5 cut(s) 232, 362, 600, 660, 751
BssMI GATC 2 cut(s) 445, 793
BssNI GRCGYC 2 cut(s) 522, 770
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 3 cut(s) 232, 362, 751
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 431, 873
Bst4CI ACNGT 3 cut(s) 618, 661, 919
BstACI GRCGYC 2 cut(s) 522, 770
BstBAI YACGTR 1 cut(s) 608
BstDEI CTNAG 3 cut(s) 83, 380, 828
BstDSI CCRYGG 2 cut(s) 600, 660
BstF5I GGATG 2 cut(s) 525, 651
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 2 cut(s) 448, 796
BstMBI GATC 2 cut(s) 445, 793
BstMCI CGRYCG 1 cut(s) 792
BstMWI GCNNNNNNNGC 3 cut(s) 101, 263, 714
BstNI CCWGG 2 cut(s) 431, 873
BstSCI CCNGG 2 cut(s) 429, 871
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 491, 550
BstZI CGGCCG 1 cut(s) 789
BsuRI GGCC 5 cut(s) 95, 266, 288, 367, 791
BtgI CCRYGG 2 cut(s) 600, 660
BtsCI GGATG 2 cut(s) 525, 651
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 423
CfoI GCGC 1 cut(s) 613
Cfr13I GGNCC 3 cut(s) 239, 287, 433
CseI GACGC 1 cut(s) 511
CsiI ACCWGGT 1 cut(s) 429
Csp6I GTAC 2 cut(s) 605, 740
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 2 cut(s) 97, 163
CviQI GTAC 2 cut(s) 605, 740
DdeI CTNAG 3 cut(s) 83, 380, 828
DpnI GATC 2 cut(s) 447, 795
DpnII GATC 2 cut(s) 445, 793
DraI TTTAAA 1 cut(s) 375
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 789
EagI CGGCCG 1 cut(s) 789
EciI GGCGGA 2 cut(s) 185, 773
EclXI CGGCCG 1 cut(s) 789
Eco130I CCWWGG 3 cut(s) 232, 362, 751
Eco24I GRGCYC 2 cut(s) 207, 735
Eco47I GGWCC 2 cut(s) 239, 433
Eco52I CGGCCG 1 cut(s) 789
Eco57I CTGAAG 1 cut(s) 90
EcoRI GAATTC 2 cut(s) 158, 302
EcoRII CCWGG 2 cut(s) 429, 871
EcoT14I CCWWGG 3 cut(s) 232, 362, 751
EcoT22I ATGCAT 1 cut(s) 865
EcoT38I GRGCYC 2 cut(s) 207, 735
ErhI CCWWGG 3 cut(s) 232, 362, 751
FaeI CATG 2 cut(s) 100, 166
FaqI GGGAC 1 cut(s) 419
FatI CATG 2 cut(s) 96, 162
FauI CCCGC 2 cut(s) 701, 869
Fnu4HI GCNGC 2 cut(s) 480, 564
FokI GGATG 2 cut(s) 512, 638
FriOI GRGCYC 2 cut(s) 207, 735
Fsp4HI GCNGC 2 cut(s) 480, 564
FspBI CTAG 4 cut(s) 413, 554, 774, 890
GlaI GCGC 1 cut(s) 612
GluI GCNGC 2 cut(s) 480, 564
GsaI CCCAGC 2 cut(s) 591, 707
HaeIII GGCC 5 cut(s) 95, 266, 288, 367, 791
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 511
HhaI GCGC 1 cut(s) 613
Hin1I GRCGYC 2 cut(s) 522, 770
Hin1II CATG 2 cut(s) 100, 166
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HinfI GANTC 6 cut(s) 209, 275, 490, 631, 697, 763
HpaII CCGG 1 cut(s) 242
HphI GGTGA 4 cut(s) 220, 529, 649, 664
Hpy188I TCNGA 3 cut(s) 390, 636, 768
Hpy188III TCNNGA 4 cut(s) 113, 272, 314, 554
HpyAV CCTTC 4 cut(s) 256, 621, 631, 722
HpyCH4III ACNGT 3 cut(s) 618, 661, 919
HpyCH4IV ACGT 4 cut(s) 516, 607, 770, 780
HpyCH4V TGCA 8 cut(s) 53, 71, 398, 455, 566, 689, 815, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 263, 714
HpyF3I CTNAG 3 cut(s) 83, 380, 828
HpySE526I ACGT 4 cut(s) 516, 607, 770, 780
Hsp92I GRCGYC 2 cut(s) 522, 770
Hsp92II CATG 2 cut(s) 100, 166
HspAI GCGC 1 cut(s) 611
Kzo9I GATC 2 cut(s) 445, 793
LmnI GCTCC 3 cut(s) 250, 547, 893
Lsp1109I GCAGC 2 cut(s) 491, 550
LweI GCATC 3 cut(s) 575, 586, 872
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 4 cut(s) 413, 554, 774, 890
MaeII ACGT 4 cut(s) 516, 607, 770, 780
MaeIII GTNAC 3 cut(s) 340, 512, 776
MalI GATC 2 cut(s) 447, 795
MbiI CCGCTC 1 cut(s) 542
MboI GATC 2 cut(s) 445, 793
MboII GAAGA 1 cut(s) 71
MfeI CAATTG 1 cut(s) 336
MhlI GDGCHC 3 cut(s) 207, 259, 735
MluCI AATT 8 cut(s) 5, 140, 158, 302, 336, 391, 466, 681
MlyI GAGTC 2 cut(s) 203, 269
Mph1103I ATGCAT 1 cut(s) 865
MseI TTAA 1 cut(s) 374
MspA1I CMGCKG 2 cut(s) 23, 827
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 431, 873
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 431, 873
MwoI GCNNNNNNNGC 3 cut(s) 101, 263, 714
NdeII GATC 2 cut(s) 445, 793
NlaIII CATG 2 cut(s) 100, 166
NlaIV GGNNCC 2 cut(s) 246, 435
NsiI ATGCAT 1 cut(s) 865
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 4 cut(s) 490, 631, 697, 763
PkrI GCNGC 2 cut(s) 481, 565
PleI GAGTC 2 cut(s) 203, 269
PpsI GAGTC 2 cut(s) 203, 269
Ppu21I YACGTR 1 cut(s) 608
Psp6I CCWGG 2 cut(s) 429, 871
PspFI CCCAGC 2 cut(s) 587, 703
PspGI CCWGG 2 cut(s) 429, 871
PspN4I GGNNCC 2 cut(s) 246, 435
PspPI GGNCC 3 cut(s) 239, 287, 433
PvuII CAGCTG 2 cut(s) 23, 827
RsaI GTAC 2 cut(s) 606, 741
RsaNI GTAC 2 cut(s) 605, 740
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 2 cut(s) 480, 564
Sau3AI GATC 2 cut(s) 445, 793
Sau96I GGNCC 3 cut(s) 239, 287, 433
SchI GAGTC 2 cut(s) 203, 269
ScrFI CCNGG 2 cut(s) 431, 873
SduI GDGCHC 3 cut(s) 207, 259, 735
SexAI ACCWGGT 1 cut(s) 429
SfaNI GCATC 3 cut(s) 575, 586, 872
SinI GGWCC 2 cut(s) 239, 433
Sse9I AATT 8 cut(s) 5, 140, 158, 302, 336, 391, 466, 681
SsiI CCGC 5 cut(s) 170, 540, 708, 758, 876
SspI AATATT 1 cut(s) 907
SspMI CTAG 4 cut(s) 413, 554, 774, 890
StyD4I CCNGG 2 cut(s) 429, 871
StyI CCWWGG 3 cut(s) 232, 362, 751
TaaI ACNGT 3 cut(s) 618, 661, 919
TaiI ACGT 4 cut(s) 519, 610, 773, 783
TaqI TCGA 4 cut(s) 207, 273, 297, 444
TasI AATT 8 cut(s) 5, 140, 158, 302, 336, 391, 466, 681
TfiI GAWTC 4 cut(s) 490, 631, 697, 763
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 1 cut(s) 423
TseI GCWGC 2 cut(s) 479, 563
TspDTI ATGAA 3 cut(s) 17, 151, 741
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 1 cut(s) 423
VpaK11BI GGWCC 2 cut(s) 239, 433
XapI RAATTY 4 cut(s) 158, 302, 391, 681
XbaI TCTAGA 1 cut(s) 553
XspI CTAG 4 cut(s) 413, 554, 774, 890
ZraI GACGTC 1 cut(s) 771
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.