RLG00000015048

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001867
Physical Location & Seq
Reverse (-)
61017269 .. 61018580
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015048

Sequence Viewer

Length: 957 bp
ATGGCTCGTTCAATTTCTCATTTCAAGAACACTGCCTCCCTTTTTCTTCTTGCATTGAATCTCAGCCTCACTATGCACCAGGTCCTGGGTGCCACTGATAACAGTACTCTCAAGTACTGCGGACCCATTACAGCCACCGATACTGATCGAGTTCAATTTGCTTTGAACTTGGAGTTCTTGGAGGCTGAGTTTTTTCTGCACGGTGCTCTTGGCAAAGGCCTCGACAGCATCAATCCTGCTTATAGCCAAGGCGGTCCTCCTCCTATTGGTGGTCAGAAGGCCCTTCTTGAAGACCTTGTTGTCGCTCGTATCATTGAGGAATTTGCTTATGAAGAAGTTGGCCATATCAGAGCGATTACTGAAACAGTAGGAGGATTTCCACGGCCTCTCTTAAATATCAGCCGTGCGCAATTTGCAAGAAGTTTGAACGATGTAGTGGGTTACGCCCTCATTCCTCCATTTGACCCCTATGCAAACTCTCTCAATTTTCTGCTAGCAGCCTATATCATCCCGTATGTGGGACTAAATGGCTATGTCAGCACCCTTCCAAGCCTTAACAGCACTATTTCTCGCAGCTTGGTTGCAAAACTCTTGGCAATTGAAGGTGGACAAGATGCAGTGATACGTACGTTACTGTATGAGAGAGCAAACGACAGGGTGGTTCCCTACAAATTCACGGTGGCTGAATTAACCAACCTTATCTCTGCAAGACGGAACTCCCTCGGTGGGTGTGGCAACAAAGATGAAGGCATCATACTGCCTAACAAGACGCTCGGGGCAGAAAATCAGACAACCAGCAATGTTCTATCCGCTGATGCAAATTCGCTTGCCTACGCGAGAACCCCGCCTGAGATCTTGAGGATTGTCTATGGAAGTTTCAATGAATCTGTGCCTGGCGGGTTTTTCCCTAAAGGAGCTAATGGAGTTATTGCAAAGAGCTACCTTACCAGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

319

Amino Acids

34.27

Weight (kDa)

6.44

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 46 - 214 8.1e-31 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
Acc16I TGCGCA 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 85
AccII CGCG 1 cut(s) 836
AciI CCGC 5 cut(s) 120, 252, 810, 845, 897
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 3 cut(s) 320, 671, 820
AfaI GTAC 3 cut(s) 106, 116, 628
AfiI CCNNNNNNNGG 6 cut(s) 85, 266, 269, 517, 518, 726
AgsI TTSAA 9 cut(s) 12, 25, 58, 155, 166, 290, 427, 602, 880
AjnI CCWGG 4 cut(s) 78, 84, 892, 947
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 3 cut(s) 576, 917, 939
AluI AGCT 3 cut(s) 576, 917, 939
Alw21I GWGCWC 1 cut(s) 208
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 4 cut(s) 217, 279, 340, 383
ApeKI GCWGC 2 cut(s) 497, 573
ApoI RAATTY 3 cut(s) 320, 671, 820
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 4 cut(s) 82, 122, 254, 280
AsuNHI GCTAGC 1 cut(s) 493
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 3 cut(s) 82, 122, 254
BaeI ACNNNNGTAYC 2 cut(s) 614, 647
BalI TGGCCA 1 cut(s) 342
BanI GGYRCC 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 738, 770
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 509, 585
BceAI ACGGC 2 cut(s) 387, 398
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 4 cut(s) 80, 86, 894, 949
BfaI CTAG 1 cut(s) 494
BglII AGATCT 1 cut(s) 852
BisI GCNGC 2 cut(s) 498, 574
BlsI GCNGC 2 cut(s) 499, 575
BmcAI AGTACT 2 cut(s) 106, 116
Bme1390I CCNGG 4 cut(s) 80, 86, 894, 949
Bme18I GGWCC 3 cut(s) 82, 122, 254
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 4 cut(s) 82, 122, 254, 280
BmiI GGNNCC 3 cut(s) 91, 124, 663
BmrFI CCNGG 4 cut(s) 80, 86, 894, 949
BmsI GCATC 4 cut(s) 237, 604, 759, 805
BmtI GCTAGC 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 95, 877
BsaAI YACGTR 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 4 cut(s) 85, 247, 380, 721
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 173, 203
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 266, 269, 517, 518, 726
Bse3DI GCAATG 1 cut(s) 805
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 4 cut(s) 80, 86, 894, 949
BseDI CCNNGG 4 cut(s) 85, 247, 380, 721
BseGI GGATG 1 cut(s) 507
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 6 cut(s) 85, 266, 269, 517, 518, 726
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 3 cut(s) 76, 177, 840
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 509, 585
BsgI GTGCAG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 836
BshFI GGCC 4 cut(s) 219, 281, 342, 385
BshNI GGYRCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 773
BsiWI CGTACG 1 cut(s) 626
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 6 cut(s) 85, 266, 269, 517, 518, 726
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 4 cut(s) 219, 281, 342, 385
BsoBI CYCGRG 1 cut(s) 773
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 3 cut(s) 145, 852, 951
BspACI CCGC 5 cut(s) 120, 252, 810, 845, 897
BspANI GGCC 4 cut(s) 219, 281, 342, 385
BspCNI CTCAG 3 cut(s) 75, 178, 841
BspFNI CGCG 1 cut(s) 836
BspLI GGNNCC 3 cut(s) 91, 124, 663
BspOI GCTAGC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 805
BssECI CCNNGG 4 cut(s) 85, 247, 380, 721
BssMI GATC 3 cut(s) 145, 852, 951
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 4 cut(s) 80, 86, 894, 949
Bst4CI ACNGT 5 cut(s) 104, 203, 367, 636, 679
BstBAI YACGTR 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 495, 828
BstDEI CTNAG 3 cut(s) 62, 186, 849
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 1 cut(s) 507
BstFNI CGCG 1 cut(s) 836
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 3 cut(s) 148, 855, 954
BstMBI GATC 3 cut(s) 145, 852, 951
BstMWI GCNNNNNNNGC 4 cut(s) 225, 413, 537, 558
BstNI CCWGG 4 cut(s) 80, 86, 894, 949
BstSCI CCNGG 4 cut(s) 78, 84, 892, 947
BstSNI TACGTA 1 cut(s) 626
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 2 cut(s) 509, 585
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 2 cut(s) 852, 951
BstYI RGATCY 2 cut(s) 852, 951
BsuRI GGCC 4 cut(s) 219, 281, 342, 385
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 1 cut(s) 507
BtsI GCAGTG 2 cut(s) 30, 624
BtsIMutI CAGTG 3 cut(s) 30, 93, 624
Cac8I GCNNGC 2 cut(s) 495, 828
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 4 cut(s) 82, 122, 254, 280
CseI GACGC 1 cut(s) 778
CsiI ACCWGGT 1 cut(s) 78
Csp6I GTAC 3 cut(s) 105, 115, 627
CviQI GTAC 3 cut(s) 105, 115, 627
DdeI CTNAG 3 cut(s) 62, 186, 849
DpnI GATC 3 cut(s) 147, 854, 953
DpnII GATC 3 cut(s) 145, 852, 951
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 340
Eco105I TACGTA 1 cut(s) 626
Eco130I CCWWGG 1 cut(s) 247
Eco147I AGGCCT 1 cut(s) 219
Eco47I GGWCC 3 cut(s) 82, 122, 254
Eco88I CYCGRG 1 cut(s) 773
EcoO109I RGGNCCY 2 cut(s) 82, 280
EcoRII CCWGG 4 cut(s) 78, 84, 892, 947
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaqI GGGAC 1 cut(s) 534
FauI CCCGC 2 cut(s) 852, 890
Fnu4HI GCNGC 2 cut(s) 498, 574
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 2 cut(s) 498, 574
FspBI CTAG 1 cut(s) 494
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 1 cut(s) 408
GluI GCNGC 2 cut(s) 498, 574
HaeIII GGCC 4 cut(s) 219, 281, 342, 385
HgaI GACGC 1 cut(s) 778
HhaI GCGC 1 cut(s) 409
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 2 cut(s) 58, 884
Hpy166II GTNNAC 1 cut(s) 608
Hpy188I TCNGA 3 cut(s) 276, 350, 789
Hpy188III TCNNGA 3 cut(s) 25, 287, 856
Hpy8I GTNNAC 1 cut(s) 608
HpyAV CCTTC 5 cut(s) 271, 293, 554, 596, 740
HpyCH4III ACNGT 5 cut(s) 104, 203, 367, 636, 679
HpyCH4IV ACGT 2 cut(s) 625, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 413, 537, 558
HpyF3I CTNAG 3 cut(s) 62, 186, 849
HpySE526I ACGT 2 cut(s) 625, 629
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 3 cut(s) 145, 852, 951
LmnI GCTCC 1 cut(s) 914
Lsp1109I GCAGC 2 cut(s) 509, 585
LweI GCATC 4 cut(s) 237, 604, 759, 805
MabI ACCWGGT 1 cut(s) 78
MaeI CTAG 1 cut(s) 494
MaeII ACGT 2 cut(s) 625, 629
MaeIII GTNAC 2 cut(s) 440, 630
MalI GATC 3 cut(s) 147, 854, 953
MboI GATC 3 cut(s) 145, 852, 951
MboII GAAGA 3 cut(s) 38, 302, 344
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 2 cut(s) 852, 951
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 9 cut(s) 12, 155, 320, 410, 484, 597, 671, 686, 820
MluNI TGGCCA 1 cut(s) 342
Mox20I TGGCCA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 342
MseI TTAA 3 cut(s) 392, 555, 689
Msp20I TGGCCA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 812
MspR9I CCNGG 4 cut(s) 80, 86, 894, 949
MunI CAATTG 1 cut(s) 597
MvaI CCWGG 4 cut(s) 80, 86, 894, 949
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 4 cut(s) 225, 413, 537, 558
NdeII GATC 3 cut(s) 145, 852, 951
NheI GCTAGC 1 cut(s) 493
NlaIV GGNNCC 3 cut(s) 91, 124, 663
NsbI TGCGCA 1 cut(s) 408
PceI AGGCCT 1 cut(s) 219
PfeI GAWTC 2 cut(s) 58, 884
Pfl23II CGTACG 1 cut(s) 626
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 2 cut(s) 499, 575
Ppu21I YACGTR 1 cut(s) 626
PpuMI RGGWCCY 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 82
Psp6I CCWGG 4 cut(s) 78, 84, 892, 947
PspGI CCWGG 4 cut(s) 78, 84, 892, 947
PspLI CGTACG 1 cut(s) 626
PspN4I GGNNCC 3 cut(s) 91, 124, 663
PspPI GGNCC 4 cut(s) 82, 122, 254, 280
PspPPI RGGWCCY 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 852, 951
RsaI GTAC 3 cut(s) 106, 116, 628
RsaNI GTAC 3 cut(s) 105, 115, 627
SaqAI TTAA 3 cut(s) 392, 555, 689
SatI GCNGC 2 cut(s) 498, 574
Sau3AI GATC 3 cut(s) 145, 852, 951
Sau96I GGNCC 4 cut(s) 82, 122, 254, 280
ScaI AGTACT 2 cut(s) 106, 116
ScrFI CCNGG 4 cut(s) 80, 86, 894, 949
SduI GDGCHC 1 cut(s) 208
SexAI ACCWGGT 1 cut(s) 78
SfaNI GCATC 4 cut(s) 237, 604, 759, 805
SinI GGWCC 3 cut(s) 82, 122, 254
SmlI CTYRAG 2 cut(s) 110, 856
SmoI CTYRAG 2 cut(s) 110, 856
SnaBI TACGTA 1 cut(s) 626
Sse9I AATT 9 cut(s) 12, 155, 320, 410, 484, 597, 671, 686, 820
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 5 cut(s) 120, 252, 810, 845, 897
SspMI CTAG 1 cut(s) 494
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 4 cut(s) 78, 84, 892, 947
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 5 cut(s) 104, 203, 367, 636, 679
TaiI ACGT 2 cut(s) 628, 632
TaqI TCGA 2 cut(s) 148, 222
TasI AATT 9 cut(s) 12, 155, 320, 410, 484, 597, 671, 686, 820
TatI WGTACW 2 cut(s) 104, 114
TfiI GAWTC 2 cut(s) 58, 884
Tru1I TTAA 3 cut(s) 392, 555, 689
Tru9I TTAA 3 cut(s) 392, 555, 689
TscAI CASTG 3 cut(s) 37, 100, 624
TseI GCWGC 2 cut(s) 497, 573
TspDTI ATGAA 3 cut(s) 345, 759, 897
TspGWI ACGGA 1 cut(s) 727
TspRI CASTG 3 cut(s) 37, 100, 624
Van91I CCANNNNNTGG 1 cut(s) 85
VpaK11BI GGWCC 3 cut(s) 82, 122, 254
XapI RAATTY 3 cut(s) 320, 671, 820
XspI CTAG 1 cut(s) 494
ZrmI AGTACT 2 cut(s) 106, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.