Rorug06G0235700

Desiccation-related protein PCC13-62-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
37801570 .. 37801932
363 bp
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UTR
Exon/CDS
Intron
Rorug06G0235700.1

Sequence Viewer

Length: 363 bp
ATGAAGTTGATTCAGAGTAAGTTAGATACACTGATGAAACAGAGTTTTGAACCTAATCACTTTGAAGTGCAGAAAGCCCTACAGTTTCGACTAAATGAATTGCTCTCTGCTAATGAGACTTATGGGAGGCAGCAATCAAGGATTCAGTGGTTAAAAGATGGTGATTGTAACACGGCTTTTTTCCATAGACATGCTTCTAATCGGAGGTGTAGGAATCGTGTCAAAGGCTTACTTAATGATGCAAGGCAGTGCATTTCCAATCCGGCAGAGGTGAATGACCAGATCATTAGGTATTATGATTCTATTTTTAGAGCTGGTAGTACTAATTCGGTGGCTCTCGAGTCAGTTATAACTTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.98

Weight (kDa)

9.37

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AfaI GTAC 1 cut(s) 322
AgsI TTSAA 2 cut(s) 50, 65
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 173, 283
AvaI CYCGRG 1 cut(s) 338
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BmcAI AGTACT 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 338
BmsI GCATC 1 cut(s) 229
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 338
Bsp143I GATC 1 cut(s) 282
BssMI GATC 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 84
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 3 cut(s) 29, 152, 254
Csp6I GTAC 1 cut(s) 321
CviAII CATG 1 cut(s) 191
CviJI RGCY 5 cut(s) 77, 176, 228, 314, 335
CviKI_1 RGCY 5 cut(s) 77, 176, 228, 314, 335
CviQI GTAC 1 cut(s) 321
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 338
FaeI CATG 1 cut(s) 194
FaiI YATR 5 cut(s) 123, 186, 192, 297, 350
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 131
HapII CCGG 1 cut(s) 263
Hin1II CATG 1 cut(s) 194
HinfI GANTC 5 cut(s) 10, 142, 214, 299, 341
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 173, 283
Hpy188I TCNGA 2 cut(s) 15, 204
Hpy188III TCNNGA 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 70, 242, 252
Hsp92II CATG 1 cut(s) 194
Kzo9I GATC 1 cut(s) 282
LpnPI CCDG 3 cut(s) 276, 293, 300
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 167
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MluCI AATT 2 cut(s) 98, 325
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 3 cut(s) 120, 198, 262
MseI TTAA 2 cut(s) 152, 234
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 1 cut(s) 263
NdeII GATC 1 cut(s) 282
NlaIII CATG 1 cut(s) 194
NspI RCATGY 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 338
PfeI GAWTC 4 cut(s) 10, 142, 214, 299
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PsiI TTATAA 1 cut(s) 350
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 2 cut(s) 152, 234
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 282
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 1 cut(s) 350
SetI ASST 5 cut(s) 55, 209, 273, 293, 316
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 80
Sfr274I CTCGAG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 2 cut(s) 98, 325
TaaI ACNGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 88, 339
TasI AATT 2 cut(s) 98, 325
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 4 cut(s) 10, 142, 214, 299
Tru1I TTAA 2 cut(s) 152, 234
Tru9I TTAA 2 cut(s) 152, 234
TscAI CASTG 3 cut(s) 36, 152, 254
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 17, 50, 111
TspRI CASTG 3 cut(s) 36, 152, 254
XceI RCATGY 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 338
ZrmI AGTACT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.